mRNA_L-elsbetiae_contig10537.526.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10537.526.1
Unique NamemRNA_L-elsbetiae_contig10537.526.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10537.526.1 vs. uniprot
Match: D8LDM0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDM0_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 1.970e-22
Identity = 49/57 (85.96%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 LRNAWHLPGGVGALASTTARRVLATRADGSQTVEEVKGAAGMGAADKKAILNSLRAQ 171
            +RNAWHLPGGVGA+ASTT RRVLATRADGSQT+EEVKGAAGMG +DKKA+LNSLR+Q
Sbjct:  436 MRNAWHLPGGVGAMASTTGRRVLATRADGSQTIEEVKGAAGMGNSDKKAMLNSLRSQ 492
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BLAST of mRNA_L-elsbetiae_contig10537.526.1 vs. uniprot
Match: A0A482SNS8_9ARCH (EF-hand domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SNS8_9ARCH)

HSP 1 Score: 57.8 bits (138), Expect = 1.490e-8
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    1 LRNAWHLPGGVGALASTTARRVLATRADGSQTVEEVKGAAGMGAADKKAILNSLRAQ 171
            +RNAWH+ GG G  A+++  RVL TR DGSQTVEEVK   G+   D  AI++ L+AQ
Sbjct:  119 MRNAWHISGGEGDAANSSNLRVLVTRLDGSQTVEEVKNDMGIKKRDTAAIISRLKAQ 175
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BLAST of mRNA_L-elsbetiae_contig10537.526.1 vs. uniprot
Match: A0A7S0SR37_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SR37_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 8.380e-8
Identity = 27/57 (47.37%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:    1 LRNAWHLPGGVGALASTTARRVLATRADGSQTVEEVKGAAGMGAADKKAILNSLRAQ 171
            +RNAWH+ GG G  A++  RRVL TR DGSQ V+E+    G+ + DK  ++N L++Q
Sbjct:    1 IRNAWHISGGEGEAANSANRRVLVTRPDGSQVVQEITNDLGLRSDDKAGMINRLKSQ 57
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BLAST of mRNA_L-elsbetiae_contig10537.526.1 vs. uniprot
Match: A0A1V9ZGC4_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZGC4_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 2.130e-6
Identity = 23/37 (62.16%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    1 LRNAWHLPGGVGALASTTARRVLATRADGSQTVEEVK 111
            +RNAWH+ GG G  A+T+ +RV+ T+ADGSQTVEE+K
Sbjct:  857 IRNAWHISGGQGQCANTSNKRVIVTKADGSQTVEEIK 893
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BLAST of mRNA_L-elsbetiae_contig10537.526.1 vs. uniprot
Match: K3WZI9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZI9_GLOUD)

HSP 1 Score: 51.2 bits (121), Expect = 5.440e-6
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 LRNAWHLPGGVGALASTTARRVLATRADGSQTVEEVK 111
            +RNAWH+ GG GA A++T RRVL T++D  QTVEEVK
Sbjct:  810 MRNAWHISGGEGACANSTNRRVLVTKSDNMQTVEEVK 846
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BLAST of mRNA_L-elsbetiae_contig10537.526.1 vs. uniprot
Match: A0A2D4BVT9_PYTIN (Calcyphosin, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BVT9_PYTIN)

HSP 1 Score: 47.8 bits (112), Expect = 9.100e-5
Identity = 25/54 (46.30%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    1 LRNAWHLPGGVGALASTTARRVLATRADGSQTVEEVKGAAGMGAADKKAILNSL 162
            +RNAWHL GG G  A+++ RRVL T  DGSQ    ++   G+GA DK+ ++  L
Sbjct:  542 MRNAWHLSGGRGWCANSSNRRVLVTFRDGSQRXVAIENDLGVGARDKRRMIQKL 595
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10537.526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LDM0_ECTSI1.970e-2285.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A482SNS8_9ARCH1.490e-854.39EF-hand domain-containing protein (Fragment) n=1 T... [more]
A0A7S0SR37_9STRA8.380e-847.37Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A1V9ZGC4_9STRA2.130e-662.16Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
K3WZI9_GLOUD5.440e-664.86Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2D4BVT9_PYTIN9.100e-546.30Calcyphosin, putative n=1 Tax=Pythium insidiosum T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10537contigL-elsbetiae_contig10537:6406..6576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.2
Seed ortholog evalue1.3e-18
Seed eggNOG ortholog2880.D8LDM0
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815277.503981-CDS-L-elsbetiae_contig10537:6405..65761622815277.503981-CDS-L-elsbetiae_contig10537:6405..6576Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10537 6406..6576 -
1691682812.3244874-CDS-L-elsbetiae_contig10537:6405..65761691682812.3244874-CDS-L-elsbetiae_contig10537:6405..6576Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10537 6406..6576 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10537.526.1prot_L-elsbetiae_contig10537.526.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10537 6406..6576 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10537.526.1

>prot_L-elsbetiae_contig10537.526.1 ID=prot_L-elsbetiae_contig10537.526.1|Name=mRNA_L-elsbetiae_contig10537.526.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=57bp
LRNAWHLPGGVGALASTTARRVLATRADGSQTVEEVKGAAGMGAADKKAI
LNSLRAQ
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mRNA from alignment at L-elsbetiae_contig10537:6406..6576-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10537.526.1 ID=mRNA_L-elsbetiae_contig10537.526.1|Name=mRNA_L-elsbetiae_contig10537.526.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=171bp|location=Sequence derived from alignment at L-elsbetiae_contig10537:6406..6576- (Laminarionema elsbetiae ELsaHSoW15)
CTCAGGAACGCGTGGCATCTTCCCGGGGGCGTCGGGGCGCTGGCCAGCAC
GACAGCCAGGCGGGTGCTGGCGACGCGCGCGGACGGCAGCCAGACGGTGG
AGGAGGTGAAGGGCGCGGCCGGTATGGGCGCCGCGGATAAGAAAGCGATC
CTCAACAGCCTCCGGGCTCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10537:6406..6576-

>mRNA_L-elsbetiae_contig10537.526.1 ID=mRNA_L-elsbetiae_contig10537.526.1|Name=mRNA_L-elsbetiae_contig10537.526.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=342bp|location=Sequence derived from alignment at L-elsbetiae_contig10537:6406..6576- (Laminarionema elsbetiae ELsaHSoW15)
CTCAGGAACGCGTGGCATCTTCCCGGGGGCGTCGGGGCGCTGGCCAGCAC
GACAGCCAGGCGGGTGCTGGCGACGCGCGCGGACGGCAGCCAGACGGTGG
AGGAGGTGAAGGGCGCGGCCGGTATGGGCGCCGCGGATAAGAAAGCGATC
CTCAACAGCCTCCGGGCTCAGCTCAGGAACGCGTGGCATCTTCCCGGGGG
CGTCGGGGCGCTGGCCAGCACGACAGCCAGGCGGGTGCTGGCGACGCGCG
CGGACGGCAGCCAGACGGTGGAGGAGGTGAAGGGCGCGGCCGGTATGGGC
GCCGCGGATAAGAAAGCGATCCTCAACAGCCTCCGGGCTCAG
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