mRNA_L-elsbetiae_contig10531.523.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10531.523.1
Unique NamemRNA_L-elsbetiae_contig10531.523.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10531.523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10531contigL-elsbetiae_contig10531:1873..2458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size301
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815277.2678535-CDS-L-elsbetiae_contig10531:1872..20491622815277.2678535-CDS-L-elsbetiae_contig10531:1872..2049Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10531 1873..2049 -
1691682812.2056227-CDS-L-elsbetiae_contig10531:1872..20491691682812.2056227-CDS-L-elsbetiae_contig10531:1872..2049Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10531 1873..2049 -
1622815277.276855-CDS-L-elsbetiae_contig10531:2335..24581622815277.276855-CDS-L-elsbetiae_contig10531:2335..2458Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10531 2336..2458 -
1691682812.217927-CDS-L-elsbetiae_contig10531:2335..24581691682812.217927-CDS-L-elsbetiae_contig10531:2335..2458Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10531 2336..2458 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10531.523.1prot_L-elsbetiae_contig10531.523.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10531 1873..2458 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10531.523.1

>prot_L-elsbetiae_contig10531.523.1 ID=prot_L-elsbetiae_contig10531.523.1|Name=mRNA_L-elsbetiae_contig10531.523.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
IVRDVGARASLVSNAVRKVGAAPPQDDPLIPIRADFVIKKSMCVSRRAEH
GEERENTRRLHFPRFRLPHRLPQVCRERLQRPQDLQGKPPPPVRCRRRPG
back to top

mRNA from alignment at L-elsbetiae_contig10531:1873..2458-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10531.523.1 ID=mRNA_L-elsbetiae_contig10531.523.1|Name=mRNA_L-elsbetiae_contig10531.523.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=586bp|location=Sequence derived from alignment at L-elsbetiae_contig10531:1873..2458- (Laminarionema elsbetiae ELsaHSoW15)
ATCGTCCGCGACGTAGGCGCGCGCGCGTCCCTGGTGTCGAACGCCGTGCG
GAAGGTCGGGGCTGCCCCTCCCCAAGATGACCCTCTGATACCGATCAGAG
CTGACTTCGTCATCAAGAAGTCCGTGAGTCGCACACTAAATACAGTCAGA
TTGACTAAATAGTATTCGATGTTGTCGCTTCATTGTACGTGAAGCCCGCA
CACAAGCAGGGGATAGAGAGAGGCGTCGTGGTGGCTTGTGTGTCTAGCAT
GCGTGTACTACAGTACAACAGTGCATGCGTGTTGTACCGTCGTGTCTTTC
TTTGCTCTTGTTCTTCTCTGCTCCCACCACTGCTGCGCGTCTGTGTGTTT
GAAAAGCCGCCGCCTCATGCTACGCCCTCTTCGTTGATTCGCTGCCGGCC
GTATTTTAGATGTGCGTGTCGAGACGCGCAGAACACGGCGAAGAACGCGA
AAACACCCGCCGGCTCCACTTCCCTCGTTTTCGGTTGCCACATCGGCTGC
CACAAGTTTGTCGAGAACGGCTACAGCGGCCTCAAGACCTACAGGGCAAG
CCACCTCCCCCAGTGCGCTGCCGGCGGCGTCCCGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig10531:1873..2458-

>mRNA_L-elsbetiae_contig10531.523.1 ID=mRNA_L-elsbetiae_contig10531.523.1|Name=mRNA_L-elsbetiae_contig10531.523.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig10531:1873..2458- (Laminarionema elsbetiae ELsaHSoW15)
ATCGTCCGCGACGTAGGCGCGCGCGCGTCCCTGGTGTCGAACGCCGTGCG
GAAGGTCGGGGCTGCCCCTCCCCAAGATGACCCTCTGATACCGATCAGAG
CTGACTTCGTCATCAAGAAGTCCATCGTCCGCGACGTAGGCGCGCGCGCG
TCCCTGGTGTCGAACGCCGTGCGGAAGGTCGGGGCTGCCCCTCCCCAAGA
TGACCCTCTGATACCGATCAGAGCTGACTTCGTCATCAAGAAGTCCATGT
GCGTGTCGAGACGCGCAGAACACGGCGAAGAACGCGAAAACACCCGCCGG
CTCCACTTCCCTCGTTTTCGGTTGCCACATCGGCTGCCACAAGTTTGTCG
AGAACGGCTACAGCGGCCTCAAGACCTACAGGGCAAGCCACCTCCCCCAG
TGCGCTGCCGGCGGCGTCCCGGGATGTGCGTGTCGAGACGCGCAGAACAC
GGCGAAGAACGCGAAAACACCCGCCGGCTCCACTTCCCTCGTTTTCGGTT
GCCACATCGGCTGCCACAAGTTTGTCGAGAACGGCTACAGCGGCCTCAAG
ACCTACAGGGCAAGCCACCTCCCCCAGTGCGCTGCCGGCGGCGTCCCGGG
back to top