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Homology
BLAST of mRNA_L-elsbetiae_contig1053.522.1 vs. uniprot
Match: D8LEG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEG8_ECTSI) HSP 1 Score: 343 bits (879), Expect = 1.680e-109 Identity = 223/323 (69.04%), Postives = 238/323 (73.68%), Query Frame = 1
Query: 1 QVTPSSTTEMRTKLFPDEAAEALDELEYHPHXXXXPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAPGGAGADVDDKAL-------AEPPAGDGIEAEGGGT-------MGGVLEGQADSGGGSAGKAKKERVAGDKGGESDGDGGG-GTMIQRMNRTFRPDPLGAYTGDRSTLRFKPQRQEGLTTLRPRQQRTIFDAAQISPMLQEYLKQSSSTAGRRSENIVRTVPVPWCQSGGSDTYRRHPSRKELHDAMNSEHAKAKREFARGRALAAKALRRTLRKVDVDRHAIFRRGPRQVGLKSMDIVTELQQQGAFKGFKR 924
+VTPS TTEMRTKLFPDEAAEA+DEL+YHPH PG XXXXXXXXXXXXXXXXXX + P GD EGG + GG G GK KKE VAG+ G GT+IQRMN+TFRPDPL AYTGDRSTLRFKP+RQEGLTTLRPRQQRTIFDAAQISPMLQEYL+QSSSTAGRRSENIVRTVPVPWCQSGGSDTYRRHPSRKELHDAMN EHAKAKREFARG+A AAKALRRTLRKVDVDR +IF++GPRQVGLKSMDIVT+LQQQGAFKGFKR
Sbjct: 375 EVTPSCTTEMRTKLFPDEAAEAMDELDYHPHHVHAPGTRATTGASVGMAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRSTPNGGD---KEGGPSPASKXXXRGGXXSGP--------GKGKKEGVAGEXXXXXXXXXGEEGTIIQRMNKTFRPDPLMAYTGDRSTLRFKPKRQEGLTTLRPRQQRTIFDAAQISPMLQEYLRQSSSTAGRRSENIVRTVPVPWCQSGGSDTYRRHPSRKELHDAMNFEHAKAKREFARGKAQAAKALRRTLRKVDVDRQSIFKKGPRQVGLKSMDIVTDLQQQGAFKGFKR 686
BLAST of mRNA_L-elsbetiae_contig1053.522.1 vs. uniprot
Match: A0A6H5JGQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGQ9_9PHAE) HSP 1 Score: 321 bits (823), Expect = 2.650e-99 Identity = 218/341 (63.93%), Postives = 232/341 (68.04%), Query Frame = 1
Query: 1 QVTPSSTTEMRTKLFPDEAAEALDELEYHPHXXXXPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------EAPGGAGADVDDKALAEPPAGDGIEAEGGGTMGGVLEGQADSGGGSAGKAKKERVAGDKGGESDGDGGG-GTMIQRMNRTFRPDPLGAYTGDRSTLRFKPQRQEGLTTLRPRQQRTIFDAAQISPMLQ-----------------------EYLKQSSSTAGRRSENIVRTVPVPWCQSGGSDTYRRHPSRKELHDAMNSEHAKAKREFARGRALAAKALRRTLRKVDVDRHAIFRRGPRQVGLKSMDIVTELQQQGAFKGFKR 924
+VTPS TTEMRTKLFPDEAAEA+DELEYHPH PG XXXXXXXXXXXXXXXXXX E GGAGA P GD + GG VAG+ GT+IQRMN+TFRPDPL AYTGDRSTLRFKP+RQEGLTTLRPRQQRTIFDAAQISPMLQ EYL+QSSSTAGRRSENIVRTVPVPWCQSGGSDTYRRHPSRKELHDAMN+EHAKAKREFARG+A A KALRRTLRKVD DR +IF++GPRQVGLKSMDIVT+LQQQGAFKGFKR
Sbjct: 547 EVTPSCTTEMRTKLFPDEAAEAMDELEYHPHHVHAPGTRATTGASVGMAAXXXXXXXXXXXXXXXXXXXXXXXXXXSETEGGAGAXX---XXXSPNGGD----KEGGPSPASXXXXXXXXXXXXXXXXXXXVAGEXXXXXXXXXXEEGTIIQRMNKTFRPDPLMAYTGDRSTLRFKPKRQEGLTTLRPRQQRTIFDAAQISPMLQVNEGERQLHTAALLRAANNRTSKEYLRQSSSTAGRRSENIVRTVPVPWCQSGGSDTYRRHPSRKELHDAMNAEHAKAKREFARGKAQAVKALRRTLRKVDADRQSIFKKGPRQVGLKSMDIVTDLQQQGAFKGFKR 880
BLAST of mRNA_L-elsbetiae_contig1053.522.1 vs. uniprot
Match: A0A7S2RI41_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RI41_9STRA) HSP 1 Score: 111 bits (277), Expect = 1.860e-26 Identity = 53/127 (41.73%), Postives = 82/127 (64.57%), Query Frame = 1
Query: 454 PLGAYTGDRSTLRFKPQRQEGLTTLRPRQQRTIFDAAQISPMLQEYLKQSSSTAGRRSENIVRTVPVPWCQSGGSDTYRRHPSRKELHDAMNSEHAKAKREFARGRALAAKALRRTLRKVDVDRHAI 834
P+ + G R TL F+P+ E L PRQQR F+A+ +SP+LQEYL+ TAGRRSE + RT PVPWC +GGS+T+ R +RKE+HD ++S++ K ++ + A K +++R +D ++ +
Sbjct: 3 PVNTFAGGRDTLHFRPRVPETLLRALPRQQRERFNASTVSPLLQEYLEHPKDTAGRRSERMNRTTPVPWCMTGGSETFHRSVNRKEIHDDLSSQYKAMKDKWKQDNIQAHKDFMKSMRSIDREKKKV 129
BLAST of mRNA_L-elsbetiae_contig1053.522.1 vs. uniprot
Match: A0A7S2V3M0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3M0_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 1.310e-9 Identity = 34/91 (37.36%), Postives = 53/91 (58.24%), Query Frame = 1
Query: 622 RSENIVRTVPVPWCQSGGSDTYRRHPSRKELHDAMNSEHAKAKREFARGRALAAKALRRTLRKVDVDRHAIFRRGPRQVGLKSMDIVTELQ 894
R E ++RT+PV WC +G +DT+RR RKELHD + + + + K++F + R K L TL + +R I + G +G S+D V L+
Sbjct: 1 RQEPMIRTMPVSWCATGATDTWRRRAPRKELHDELMASYWREKKDFEKHRVSLRKNLVMTLNNNERERAQIIQGGNSTIGKFSLDKVNSLK 91
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 330.9 |
Seed ortholog evalue | 6.4e-88 |
Seed eggNOG ortholog | 2880.D8LEG8 |
Hectar predicted targeting category | other localisation |
EggNOG free text desc. | Protein of unknown function |
EggNOG OGs | 2CYBT@1,2S3FI@2759 |
COG Functional cat. | S |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
Ec32 ortholog description | FAM227 Protein |
Ec32 ortholog | Ec-21_004750.1 |
Exons | 3 |
Model size | 1009 |
Cds size | 912 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815277.1856782-UTR-L-elsbetiae_contig1053:26873..26943 | 1622815277.1856782-UTR-L-elsbetiae_contig1053:26873..26943 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1053 26874..26943 - |
1691682812.1524682-UTR-L-elsbetiae_contig1053:26873..26943 | 1691682812.1524682-UTR-L-elsbetiae_contig1053:26873..26943 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1053 26874..26943 - |
1622815277.2340107-UTR-L-elsbetiae_contig1053:29489..29516 | 1622815277.2340107-UTR-L-elsbetiae_contig1053:29489..29516 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1053 29490..29516 - |
1691682812.1975667-UTR-L-elsbetiae_contig1053:29489..29516 | 1691682812.1975667-UTR-L-elsbetiae_contig1053:29489..29516 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1053 29490..29516 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815277.1974714-CDS-L-elsbetiae_contig1053:26943..27118 | 1622815277.1974714-CDS-L-elsbetiae_contig1053:26943..27118 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1053 26944..27118 - |
1691682812.1677861-CDS-L-elsbetiae_contig1053:26943..27118 | 1691682812.1677861-CDS-L-elsbetiae_contig1053:26943..27118 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1053 26944..27118 - |
1622815277.2124007-CDS-L-elsbetiae_contig1053:27944..28123 | 1622815277.2124007-CDS-L-elsbetiae_contig1053:27944..28123 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1053 27945..28123 - |
1691682812.178997-CDS-L-elsbetiae_contig1053:27944..28123 | 1691682812.178997-CDS-L-elsbetiae_contig1053:27944..28123 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1053 27945..28123 - |
1622815277.2214687-CDS-L-elsbetiae_contig1053:28931..29489 | 1622815277.2214687-CDS-L-elsbetiae_contig1053:28931..29489 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1053 28932..29489 - |
1691682812.1887498-CDS-L-elsbetiae_contig1053:28931..29489 | 1691682812.1887498-CDS-L-elsbetiae_contig1053:28931..29489 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1053 28932..29489 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1053.522.1 >prot_L-elsbetiae_contig1053.522.1 ID=prot_L-elsbetiae_contig1053.522.1|Name=mRNA_L-elsbetiae_contig1053.522.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=304bp
MRTKLFPDEAAEALDELEYHPHHVHAPGTRATTGVAAAAAAAAAAAASGA GGSPSSPPPEAPGGAGADVDDKALAEPPAGDGIEAEGGGTMGGVLEGQAD SGGGSAGKAKKERVAGDKGGESDGDGGGGTMIQRMNRTFRPDPLGAYTGD RSTLRFKPQRQEGLTTLRPRQQRTIFDAAQISPMLQEYLKQSSSTAGRRS ENIVRTVPVPWCQSGGSDTYRRHPSRKELHDAMNSEHAKAKREFARGRAL AAKALRRTLRKVDVDRHAIFRRGPRQVGLKSMDIVTELQQQGAFKGFKRS SRS* back to topmRNA from alignment at L-elsbetiae_contig1053:26874..29516- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1053.522.1 ID=mRNA_L-elsbetiae_contig1053.522.1|Name=mRNA_L-elsbetiae_contig1053.522.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2643bp|location=Sequence derived from alignment at L-elsbetiae_contig1053:26874..29516- (Laminarionema elsbetiae ELsaHSoW15) CAGGTAACCCCATCTTCCACCACCGAGATGAGGACCAAGCTGTTTCCGGA
CGAGGCGGCGGAAGCCCTGGACGAGCTAGAGTACCACCCCCACCACGTGC
ACGCGCCGGGGACGCGAGCAACAACGGGCGTGGCCGCGGCGGCCGCGGCG
GCGGCGGCGGCAGCAGCTTCGGGAGCAGGGGGATCCCCTTCCTCGCCACC
GCCGGAGGCGCCGGGGGGCGCCGGGGCAGACGTGGACGATAAAGCTCTGG
CGGAACCCCCGGCGGGGGATGGGATCGAAGCGGAGGGCGGCGGCACGATG
GGGGGGGTGCTAGAAGGCCAGGCTGACAGCGGTGGAGGCAGCGCCGGGAA
GGCGAAGAAAGAAAGGGTCGCAGGAGACAAGGGGGGGGAGAGTGATGGGG
ACGGGGGGGGGGGGACGATGATTCAGCGGATGAACAGGACGTTTCGGCCG
GATCCTCTGGGGGCGTACACCGGCGACCGGAGCACGCTGAGGTTCAAGCC
CCAGCGGCAAGAGGGCCTCACGACTCTCAGGCCGCGACAGCAGCGCACGA
TCTTCGACGCGGCTCAGATATCTCCGATGTTGCAGGTGAACTGAAGAATG
AGTGGTATGGATCTACATTCTGGTCACAATAACGGTACGATAGTTATTTG
ATGCTTTGTGTCTGCTGGCGTCTGCAGTTGTGCCAAATTCCTCGAGGGTG
TTGGCACAACAAAATGTACCAAATCCCTCGAGGGTTTGCGTAACACAATG
AGCTTGTCAAGGCCTCTGCACTTCGAAGCATGCGACGTTTTTCATGGGAC
GTGTGCATACGATTCGGTGGGTAAATGGAAGGGGAGAAACTGCTCAGCCG
CGGTCGTCCAACTACTGTCGTTCTGCCATGTCAGCGCAACTCGTCCGAAC
CGAGCCGATGCCGACGTCCTACATTGCACACACACACGCAATTCATTTTT
TCACGATGAAACACATTACAAACGCCTGGAAAACACGGTCGGCGGTCCAC
CAACATCTCAAACACGAGTATCTAGAGATAACGGTCGTAATATATAGTGT
TACTCCGCGGATCCTCTTCTCACTGTTTGTTCGTTTGTACCTACAGTAAA
CAAAAACTTGCATAAGCACGCAAGAAATGCCTCCCAAGGAAGAGTGGTGA
CACTACTTTTCGATGTCCTCCGAGACAACCTGATAGAGTTCTCCTCGGCA
GCTTACAGTGGTCTTCAAGGAACGTGGACGGGTAGTCTTACTAGATACAT
GATTGCTTGATGCGCGCAGCCTAAACAAAGAAATTGATCGATCGAACTTG
TTGCCGCAACCTTACGCCTAAATTACCTTTCGCCGTAACAAACCAACACA
CACATACACGCACACGCACGCACCCAAACCCTTTCCAAAAAAGGAGTACC
TGAAACAGAGCAGCTCTACCGCGGGGAGGCGGTCCGAGAACATCGTCCGG
ACCGTGCCGGTGCCGTGGTGCCAGAGCGGCGGGTCCGACACCTACCGACG
GCACCCCTCCAGAAAAGAGCTGCACGACGCGATGAACTCCGAGCACGCCA
AGGCGAAGAGAGAGTTCGCAAGGTGATGGGCACGGCTGGGAGGAAGAGGG
GGAGGGGAGACGGGGCGAGTGCAAGGCACTCAGTGTATATTGTAGTGTAT
ATTTATATGCGCTGCCGCGGCGTAAGTAGTCAATACAGCAGCAGCTGGTT
TGGCCTGAGAAGAGAATACAGCCTACAGGAGGGGAGAGGGGATTTGTTCA
CGCCGTTAATAAGTATCTAGGGCTTGAGGGGAAAAGGGAGAGTTGGTGCC
CTTGAGACCCATATAGATTGCCAAAAGGCAGACAGAGGCAAGCATCCGCA
GATGAAAGAAAAAGTCGGAAAATATCTGAGGGAGGAAGGAAGGTTGGGTA
TTATAGAGGTCGCCGAACCCAAAAAAAGTACCACCTGGGGGTCGGATGAT
GAGTGTGAAGTAGTGTTGAGGCTGGGCACTGAAAATATCGCGAAATGCTT
GGTTTAAGGGAGAGCGGGCGGGGGGCGGGCGGCGGGGCGGGCAGGCAGCA
CATGTACTGCAGCCCACTCCTGCTCATTGTCGCGCATGGGGATGAAAGAC
GCTCCTGTGGAGAGCATAGCGGCTCTGTACGCCTTTGGTGGCATACGTGA
ATGAACTGGCCAGGGGAAACACACGGAAAATATGTACCATATGTATGTAT
GTAGGTTGTTCTTCGTGCCAACCCTGCCCCACCTTACGCCAGGAATCGAT
GGATAGTGTCTGCTATTGTACTGCTGGCTACATGCAGTGTTCAGCGGCGA
CAAGCGGACCTCCCGAACTTCTCCGTCACGACAGGCTCAGATACGATGCA
TGCCACCCGCGGTGCTGATTTGTCTCCCCGTCTCCCCAACCCGTTCAGGG
GGAGAGCGCTGGCGGCAAAAGCGTTGCGACGAACGCTCCGGAAGGTGGAC
GTGGACCGGCACGCGATCTTCAGGAGGGGTCCGCGCCAGGTGGGGCTGAA
GAGCATGGACATCGTCACCGAGCTGCAGCAGCAGGGGGCCTTCAAGGGCT
TCAAGCGGTCCTCTCGGAGTTAGGCGGCGGCGGGCGCGCGGACGATCGCG
ATATATTGTACAACAAGCAGTTCGGTTTCCGTTTTGGTTTTGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1053:26874..29516- >mRNA_L-elsbetiae_contig1053.522.1 ID=mRNA_L-elsbetiae_contig1053.522.1|Name=mRNA_L-elsbetiae_contig1053.522.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1824bp|location=Sequence derived from alignment at L-elsbetiae_contig1053:26874..29516- (Laminarionema elsbetiae ELsaHSoW15) ATGAGGACCAAGCTGTTTCCGGACGAGGCGGCGGAAGCCCTGGACGAGCT AGAGTACCACCCCCACCACGTGCACGCGCCGGGGACGCGAGCAACAACGG GCGTGGCCGCGGCGGCCGCGGCGGCGGCGGCGGCAGCAGCTTCGGGAGCA GGGGGATCCCCTTCCTCGCCACCGCCGGAGGCGCCGGGGGGCGCCGGGGC AGACGTGGACGATAAAGCTCTGGCGGAACCCCCGGCGGGGGATGGGATCG AAGCGGAGGGCGGCGGCACGATGGGGGGGGTGCTAGAAGGCCAGGCTGAC AGCGGTGGAGGCAGCGCCGGGAAGGCGAAGAAAGAAAGGGTCGCAGGAGA CAAGGGGGGGGAGAGTGATGGGGACGGGGGGGGGGGGACGATGATTCAGC GGATGAACAGGACGTTTCGGCCGGATCCTCTGGGGGCGTACACCGGCGAC CGGAGCACGCTGAGGTTCAAGCCCCAGCGGCAAGAGGGCCTCACGACTCT CAGGCCGCGACAGCAGCGCACGATCTTCGACGCGGCTCAGATATCTCCGA TGTTGCAGATGAGGACCAAGCTGTTTCCGGACGAGGCGGCGGAAGCCCTG GACGAGCTAGAGTACCACCCCCACCACGTGCACGCGCCGGGGACGCGAGC AACAACGGGCGTGGCCGCGGCGGCCGCGGCGGCGGCGGCGGCAGCAGCTT CGGGAGCAGGGGGATCCCCTTCCTCGCCACCGCCGGAGGCGCCGGGGGGC GCCGGGGCAGACGTGGACGATAAAGCTCTGGCGGAACCCCCGGCGGGGGA TGGGATCGAAGCGGAGGGCGGCGGCACGATGGGGGGGGTGCTAGAAGGCC AGGCTGACAGCGGTGGAGGCAGCGCCGGGAAGGCGAAGAAAGAAAGGGTC GCAGGAGACAAGGGGGGGGAGAGTGATGGGGACGGGGGGGGGGGGACGAT GATTCAGCGGATGAACAGGACGTTTCGGCCGGATCCTCTGGGGGCGTACA CCGGCGACCGGAGCACGCTGAGGTTCAAGCCCCAGCGGCAAGAGGGCCTC ACGACTCTCAGGCCGCGACAGCAGCGCACGATCTTCGACGCGGCTCAGAT ATCTCCGATGTTGCAGGAGTACCTGAAACAGAGCAGCTCTACCGCGGGGA GGCGGTCCGAGAACATCGTCCGGACCGTGCCGGTGCCGTGGTGCCAGAGC GGCGGGTCCGACACCTACCGACGGCACCCCTCCAGAAAAGAGCTGCACGA CGCGATGAACTCCGAGCACGCCAAGGCGAAGAGAGAGTTCGCAAGGAGTA CCTGAAACAGAGCAGCTCTACCGCGGGGAGGCGGTCCGAGAACATCGTCC GGACCGTGCCGGTGCCGTGGTGCCAGAGCGGCGGGTCCGACACCTACCGA CGGCACCCCTCCAGAAAAGAGCTGCACGACGCGATGAACTCCGAGCACGC CAAGGCGAAGAGAGAGTTCGCAAGGGGGAGAGCGCTGGCGGCAAAAGCGT TGCGACGAACGCTCCGGAAGGTGGACGTGGACCGGCACGCGATCTTCAGG AGGGGTCCGCGCCAGGTGGGGCTGAAGAGCATGGACATCGTCACCGAGCT GCAGCAGCAGGGGGCCTTCAAGGGCTTCAAGCGGTCCTCTCGGAGTTAGG GGGAGAGCGCTGGCGGCAAAAGCGTTGCGACGAACGCTCCGGAAGGTGGA CGTGGACCGGCACGCGATCTTCAGGAGGGGTCCGCGCCAGGTGGGGCTGA AGAGCATGGACATCGTCACCGAGCTGCAGCAGCAGGGGGCCTTCAAGGGC TTCAAGCGGTCCTCTCGGAGTTAG back to top
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