mRNA_L-elsbetiae_contig1053.520.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1053.520.1
Unique NamemRNA_L-elsbetiae_contig1053.520.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1053.520.1 vs. uniprot
Match: D8LEH1_ECTSI (SH3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEH1_ECTSI)

HSP 1 Score: 248 bits (632), Expect = 6.130e-78
Identity = 118/126 (93.65%), Postives = 121/126 (96.03%), Query Frame = 1 
Query:    1 MATWKGGPKPPPRVVAPNKLWHAFKHKNLDVFKFDLDQDEDQNYVAASERFLEFQTQLGMVLHHTELFRKTLEESLQQAVELADDFGRVAAGNGGGRTVEPWAHKAGSQAFFLKGMLEESVVSLRQ 378
            MATWKGGPKPPPRVVAPNKLWHAFKHKNLDVFKFDLD DEDQNYV+ASERFLEFQTQLGMVLHHT+LFRKTLEESLQ AVELADDFGRVAAGNGGGRT+EPWA KAG QAFFLKGMLEES VSLRQ
Sbjct:    1 MATWKGGPKPPPRVVAPNKLWHAFKHKNLDVFKFDLDADEDQNYVSASERFLEFQTQLGMVLHHTQLFRKTLEESLQHAVELADDFGRVAAGNGGGRTMEPWAQKAGGQAFFLKGMLEESAVSLRQ 126
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1053.520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEH1_ECTSI6.130e-7893.65SH3 domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1053contigL-elsbetiae_contig1053:376..3001 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score246.1
Seed ortholog evalue8.6e-63
Seed eggNOG ortholog2880.D8LEH1
KEGG koko:K11247,ko:K11650,ko:K20047
KEGG Pathwayko04144,ko04714,ko05225,map04144,map04714,map05225
Hectar predicted targeting categoryother localisation
EggNOG free text desc.intracellular protein transport
EggNOG OGsKOG2199@1,KOG2199@2759
Ec32 ortholog descriptionSH3 domain
Ec32 orthologEc-21_004710.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021,ko03036,ko04131
Exons3
Model size381
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1053.520.1prot_L-elsbetiae_contig1053.520.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1053 376..3001 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815276.8901453-CDS-L-elsbetiae_contig1053:375..5851622815276.8901453-CDS-L-elsbetiae_contig1053:375..585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1053 376..585 -
1691682811.9285958-CDS-L-elsbetiae_contig1053:375..5851691682811.9285958-CDS-L-elsbetiae_contig1053:375..585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1053 376..585 -
1622815276.90161-CDS-L-elsbetiae_contig1053:2458..25291622815276.90161-CDS-L-elsbetiae_contig1053:2458..2529Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1053 2459..2529 -
1691682811.9385765-CDS-L-elsbetiae_contig1053:2458..25291691682811.9385765-CDS-L-elsbetiae_contig1053:2458..2529Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1053 2459..2529 -
1622815276.9136176-CDS-L-elsbetiae_contig1053:2901..30011622815276.9136176-CDS-L-elsbetiae_contig1053:2901..3001Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1053 2902..3001 -
1691682811.9460926-CDS-L-elsbetiae_contig1053:2901..30011691682811.9460926-CDS-L-elsbetiae_contig1053:2901..3001Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1053 2902..3001 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1053.520.1

>prot_L-elsbetiae_contig1053.520.1 ID=prot_L-elsbetiae_contig1053.520.1|Name=mRNA_L-elsbetiae_contig1053.520.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
MATWKGGPKPPPRVVAPNKLWHAFKHKNLDVFKFDLDQDEDQNYVAASER
FLEFQTQLGMVLHHTELFRKTLEESLQQAVELADDFGRVAAGNGGGRTVE
PWAHKAGSQAFFLKGMLEESVVSLRQ*
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mRNA from alignment at L-elsbetiae_contig1053:376..3001-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1053.520.1 ID=mRNA_L-elsbetiae_contig1053.520.1|Name=mRNA_L-elsbetiae_contig1053.520.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2626bp|location=Sequence derived from alignment at L-elsbetiae_contig1053:376..3001- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGACGTGGAAAGGAGGACCGAAGCCCCCGCCGAGAGTGGTGGCGCC
AAACAAACTGTGGCATGCGTTCAAGCACAAGAATTTGGACGTTTTTAAGT
GTGAGTGGGTGTTTCCTCTGGAGAGCAACTGATGACTGCGACACCGCGCC
GCTCTCGCAGGTTTTGTGCCTGTCTACGATCTTGCCCCCCCCCGCGGAGA
AGAATTGTATAACTGGCGAAAGCGTTTTGCAGCGCAGAGAGCAGCGGCTC
AACAAGGTCGAGGTTGTATGCGTGCGTTTCTCTCCCCCCCCACGCCAAAA
AAAAAGTTGCGCGATCTCTCCGCGACAACCCGCGCAAAGTCCGTTGGTTG
GTTTCCTCTCTCAATCGTGTCCCCCGCTGCTCTTTCCTTCTCGAGAGAGA
TGCATGGGAGAATGTGCCGACCCCCGACCCCGCGTATGCGCTTGCACCCG
AACGACTTCAATCTCAATCCAGTCGACCTTGACCAAGATGAAGATCAAAA
CTACGTCGCGGCGTCTGAAAGATTTCTGGAGTTCCAGACACAGGTAATGT
ACAGTATGGTATCTGTGTAGGTAGTAGCACTGATCCTAACAAAGGCAGGC
ACGGATAGTCAGTCGTGTGACGTCATATTTATGGGTTCCACATCACTCTA
TGCCGCTCACTCCTACTACTGCTGTGCTCCTGTGTGCATGCTCTTGTTTT
TCCCATGAACCACAAATGCAAGCAGTCTTCTGTCCTGGTCGAGGGTTTGC
TGGTTGCTGTTTTTGTTTAGTCCTCAAGTACCGCCGTTAAGCGTACCATT
ACAATAGACACCAGTGGTGGCGTGCGGGCTCTGTGTGTGTGTGGGTGTGT
GTCCCTCCCATTTATTTTGGCGACAGTCCCCCCAAGTGGAGACGTGTACT
ACACCTGCGGTGTTACTCTACATCAATGTATCGCTGTGCGATGTAATCCT
AACAGTTTTTTTGTTATTTATCGCACAGGTGAGCCCCGGCATGTGCGATA
GATAGATAGATGCACACAGAGCCCCGCCCGCCCTGTGCGATTAGCCAGCA
AGCCACTATTAGAAATACGGCGGTACAAAGCTGTGCCGGAAAAACCCGGA
ACACAGAATTCGGATGTTTTTTTTATTCCTCCGCCGTTGGTGATATTCGG
GACTCCACTGCTTTTTTTTTTGTGTCGAGGAGCGAGGGGAGGGGACGGGG
TTCCAGGCTAAATTTACATACGATACAGATCTGTTTAGTTCAGCGGGCAA
TAGTTCACGTACGTATTATGATCCTACTGTATATCTATTTTTACTGCTTT
CAGGAGTATATATACAAAACCCTTTGAGGGTAAGTTATCCTGTGACCGCG
GGAATTGACCGCGTCAAGTGTTGGATTAGTACACGGACTCGTGGAGATGT
ACTGGATAGAGAGATCGGAACGGTTTTCTAATGTGAAGAGCAACAACATT
TATGTGTTTTGATTTTGTAACGTGGCGGTATTTAGTCATCGCTTTGTACC
CTCTCTCGCGGGGGTCCTTGATGCTATTTAGTCACCTTTTAGAGGTTAAG
TTAAGGCTGTGACCACGGGGTCGGCCGACGGCAGCATGCGCTCGATGAGC
ACGAAACATACGTAAAAACATATGTACGTACATATGAAGGTACTGACTCT
GGTCATCGATACAATGGACAGATCGGGACGTTTTCTTTTGAAGTGAAGAA
GAAGAAGAATAATGAAAACTACGGAGGGTAAAAAATACAACACTACTTTT
TAAAATAAAACAAAGAATCAAAGATGGAACCTAACCCATACTAGAGCAAA
GACTCGATATGGGGTTCAAACGGTATTCCATACAGAGACGTAATATTTGG
CGAAGCGAGCTTTTTCTGCTACAAGTAGTGAATATTGTTAATTCACCACG
GAGTCCCTCTCTTGTGGGGAGGTTCTTTTTCTTCGATTTCCTTCCTGGCT
TATTTTCAGGACCGACTAAAGCCTGAAATTAAGTCAGTGGTCTACGCGGG
GTTCTTGTCTCAAGCTAACATATGGGATAAAGTATGGAAACCGTTTGGGG
GGGTCGGTGGTTGGGGTTAGGGTTAGGGTTAGAGTTAGTAGTATAAAATT
AATTTCTGCGTAGGCGGTCCAATTAAGTTGGTCTAAATAGGAAAATAACC
CTAACCCTTACCCCAACCCTATAACCCTAACCCCAACCACCGACCCCCCT
TTCCCAGTTTTCCATATGTACTTTATTATCTCGTATGTTAGCTGAAGATG
AAAACCCTGCGTAGACTACTACTGCTGTTGTACTTTCAATAACTCTCATG
TACGTACCTGCATATTGTATGTCCGCGCCTTGGAACCGTCCGGCTCTATT
GTTATGTAACTGTTACATGACACGGTGGACCAACATCAACAACAAAACAC
ACACACGCACACACAGCTCGGGATGGTGCTGCACCACACGGAACTGTTCC
GGAAAACGCTGGAGGAGTCCCTCCAGCAGGCGGTGGAGCTGGCCGACGAC
TTCGGGAGGGTCGCGGCGGGCAACGGGGGGGGGCGCACGGTCGAGCCGTG
GGCGCACAAGGCCGGCAGCCAGGCCTTCTTCTTGAAGGGGATGCTGGAGG
AAAGCGTGGTGTCCCTACGACAGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1053:376..3001-

>mRNA_L-elsbetiae_contig1053.520.1 ID=mRNA_L-elsbetiae_contig1053.520.1|Name=mRNA_L-elsbetiae_contig1053.520.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig1053:376..3001- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGACGTGGAAAGGAGGACCGAAGCCCCCGCCGAGAGTGGTGGCGCC
AAACAAACTGTGGCATGCGTTCAAGCACAAGAATTTGGACGTTTTTAAGT
ATGGCGACGTGGAAAGGAGGACCGAAGCCCCCGCCGAGAGTGGTGGCGCC
AAACAAACTGTGGCATGCGTTCAAGCACAAGAATTTGGACGTTTTTAAGT
TCGACCTTGACCAAGATGAAGATCAAAACTACGTCGCGGCGTCTGAAAGA
TTTCTGGAGTTCCAGACACAGTCGACCTTGACCAAGATGAAGATCAAAAC
TACGTCGCGGCGTCTGAAAGATTTCTGGAGTTCCAGACACAGCTCGGGAT
GGTGCTGCACCACACGGAACTGTTCCGGAAAACGCTGGAGGAGTCCCTCC
AGCAGGCGGTGGAGCTGGCCGACGACTTCGGGAGGGTCGCGGCGGGCAAC
GGGGGGGGGCGCACGGTCGAGCCGTGGGCGCACAAGGCCGGCAGCCAGGC
CTTCTTCTTGAAGGGGATGCTGGAGGAAAGCGTGGTGTCCCTACGACAGT
GACTCGGGATGGTGCTGCACCACACGGAACTGTTCCGGAAAACGCTGGAG
GAGTCCCTCCAGCAGGCGGTGGAGCTGGCCGACGACTTCGGGAGGGTCGC
GGCGGGCAACGGGGGGGGGCGCACGGTCGAGCCGTGGGCGCACAAGGCCG
GCAGCCAGGCCTTCTTCTTGAAGGGGATGCTGGAGGAAAGCGTGGTGTCC
CTACGACAGTGA
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