mRNA_L-elsbetiae_contig10526.516.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10526.516.1
Unique NamemRNA_L-elsbetiae_contig10526.516.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10526.516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10526contigL-elsbetiae_contig10526:1177..1556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size380
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10526.516.1prot_L-elsbetiae_contig10526.516.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10526 1216..1521 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815276.7104023-UTR-L-elsbetiae_contig10526:1176..12151622815276.7104023-UTR-L-elsbetiae_contig10526:1176..1215Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10526 1177..1215 +
1691682811.8565726-UTR-L-elsbetiae_contig10526:1176..12151691682811.8565726-UTR-L-elsbetiae_contig10526:1176..1215Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10526 1177..1215 +
1622815276.7302437-UTR-L-elsbetiae_contig10526:1521..15561622815276.7302437-UTR-L-elsbetiae_contig10526:1521..1556Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10526 1522..1556 +
1691682811.8753495-UTR-L-elsbetiae_contig10526:1521..15561691682811.8753495-UTR-L-elsbetiae_contig10526:1521..1556Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10526 1522..1556 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815276.720126-CDS-L-elsbetiae_contig10526:1215..15211622815276.720126-CDS-L-elsbetiae_contig10526:1215..1521Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10526 1216..1521 +
1691682811.8648283-CDS-L-elsbetiae_contig10526:1215..15211691682811.8648283-CDS-L-elsbetiae_contig10526:1215..1521Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10526 1216..1521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10526.516.1

>prot_L-elsbetiae_contig10526.516.1 ID=prot_L-elsbetiae_contig10526.516.1|Name=mRNA_L-elsbetiae_contig10526.516.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
MFSIAIGSSAYTGTLWLCRRVRGASAFDSSLSPLPGAWYLVFLVALLYLI
FRVVCTLPSVLFSASETQDPPGSQFSIAWRACIIVLFCFSLSGVECALFF
V*
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mRNA from alignment at L-elsbetiae_contig10526:1177..1556+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10526.516.1 ID=mRNA_L-elsbetiae_contig10526.516.1|Name=mRNA_L-elsbetiae_contig10526.516.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=380bp|location=Sequence derived from alignment at L-elsbetiae_contig10526:1177..1556+ (Laminarionema elsbetiae ELsaHSoW15)
ACTGGCAGGGTGCAAGAGACTGTTTCCTGTGATTTTATAATGTTTTCAAT
CGCGATCGGATCGTCGGCTTATACAGGAACCCTCTGGCTTTGTAGGCGGG
TGCGGGGAGCCTCGGCTTTCGATAGCTCTCTCTCTCCTCTGCCTGGCGCG
TGGTATCTGGTCTTTCTAGTAGCTTTATTATATTTAATTTTCCGAGTGGT
TTGTACCCTACCTTCTGTTTTGTTTAGTGCCAGCGAGACGCAAGATCCCC
CCGGGAGTCAGTTTAGTATCGCCTGGCGCGCATGTATTATAGTTTTGTTT
TGCTTTTCCTTGAGCGGCGTTGAGTGTGCCCTATTTTTCGTGTGACCACG
GGCCCCCATGGATGCTTTGGACTAGAGAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10526:1177..1556+

>mRNA_L-elsbetiae_contig10526.516.1 ID=mRNA_L-elsbetiae_contig10526.516.1|Name=mRNA_L-elsbetiae_contig10526.516.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig10526:1177..1556+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTTCAATCGCGATCGGATCGTCGGCTTATACAGGAACCCTCTGGCT
TTGTAGGCGGGTGCGGGGAGCCTCGGCTTTCGATAGCTCTCTCTCTCCTC
TGCCTGGCGCGTGGTATCTGGTCTTTCTAGTAGCTTTATTATATTTAATT
TTCCGAGTGGTTTGTACCCTACCTTCTGTTTTGTTTAGTGCCAGCGAGAC
GCAAGATCCCCCCGGGAGTCAGTTTAGTATCGCCTGGCGCGCATGTATTA
TAGTTTTGTTTTGCTTTTCCTTGAGCGGCGTTGAGTGTGCCCTATTTTTC
GTGTGAATGTTTTCAATCGCGATCGGATCGTCGGCTTATACAGGAACCCT
CTGGCTTTGTAGGCGGGTGCGGGGAGCCTCGGCTTTCGATAGCTCTCTCT
CTCCTCTGCCTGGCGCGTGGTATCTGGTCTTTCTAGTAGCTTTATTATAT
TTAATTTTCCGAGTGGTTTGTACCCTACCTTCTGTTTTGTTTAGTGCCAG
CGAGACGCAAGATCCCCCCGGGAGTCAGTTTAGTATCGCCTGGCGCGCAT
GTATTATAGTTTTGTTTTGCTTTTCCTTGAGCGGCGTTGAGTGTGCCCTA
TTTTTCGTGTGA
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