mRNA_L-elsbetiae_contig10525.515.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10525.515.1
Unique NamemRNA_L-elsbetiae_contig10525.515.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10525.515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10525contigL-elsbetiae_contig10525:2518..3132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-22_003900.1
Exons1
Model size616
Cds size465
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815276.63243-UTR-L-elsbetiae_contig10525:2517..26671622815276.63243-UTR-L-elsbetiae_contig10525:2517..2667Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10525 2518..2667 +
1691682811.8396854-UTR-L-elsbetiae_contig10525:2517..26671691682811.8396854-UTR-L-elsbetiae_contig10525:2517..2667Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10525 2518..2667 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815276.6785777-CDS-L-elsbetiae_contig10525:2667..31321622815276.6785777-CDS-L-elsbetiae_contig10525:2667..3132Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10525 2668..3132 +
1691682811.8486056-CDS-L-elsbetiae_contig10525:2667..31321691682811.8486056-CDS-L-elsbetiae_contig10525:2667..3132Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10525 2668..3132 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10525.515.1prot_L-elsbetiae_contig10525.515.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10525 2668..3132 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10525.515.1

>prot_L-elsbetiae_contig10525.515.1 ID=prot_L-elsbetiae_contig10525.515.1|Name=mRNA_L-elsbetiae_contig10525.515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=155bp
MTCAAPWLPPDAARRNSGATTACPQTHKLVVVAAGKKCHRHHPRRSRGPE
PAARRVSAGRLEEGSSSSNSGCTSQCAAKATATLPNLPLKRRPDAASKKL
RNTTAAKTKLESRIAAGALPALPSLANERDATTTPSGGGMPPPPRAAPKR
RDVHS
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mRNA from alignment at L-elsbetiae_contig10525:2518..3132+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10525.515.1 ID=mRNA_L-elsbetiae_contig10525.515.1|Name=mRNA_L-elsbetiae_contig10525.515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=615bp|location=Sequence derived from alignment at L-elsbetiae_contig10525:2518..3132+ (Laminarionema elsbetiae ELsaHSoW15)
CCTCCCTCGCCCTCCGTCTCCTCTCTGTCTCACACCCACACAGGCTGGAG
ATTCGTGCAGCATTGCCCGAGAAGGAGCTCGAAGTGAGATAGATACCTGT
CCGCCGCTTGGGGACCGCGGCGTGCGCGCTGCCGGGTGCATGGTTTGTCG
ATGACATGTGCCGCGCCCTGGCTGCCCCCTGATGCCGCCAGGAGAAATTC
CGGGGCTACAACCGCTTGCCCGCAAACACACAAGCTGGTCGTTGTCGCTG
CTGGAAAGAAGTGCCATCGACATCACCCACGACGTTCTAGAGGGCCAGAG
CCTGCCGCGCGGAGGGTATCAGCAGGACGGCTAGAAGAGGGCAGCAGCAG
CAGCAACAGCGGGTGCACTTCTCAATGTGCGGCCAAGGCTACGGCCACTC
TACCCAATTTACCCCTGAAACGCCGTCCAGATGCAGCATCCAAGAAACTC
CGCAACACCACCGCCGCGAAGACGAAGCTCGAGAGCCGAATCGCAGCAGG
GGCACTCCCTGCTCTGCCTTCCCTCGCAAACGAGCGCGATGCAACAACAA
CCCCTTCCGGCGGCGGGATGCCACCCCCTCCCAGGGCAGCACCGAAGCGG
CGTGATGTCCACTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10525:2518..3132+

>mRNA_L-elsbetiae_contig10525.515.1 ID=mRNA_L-elsbetiae_contig10525.515.1|Name=mRNA_L-elsbetiae_contig10525.515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=930bp|location=Sequence derived from alignment at L-elsbetiae_contig10525:2518..3132+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACATGTGCCGCGCCCTGGCTGCCCCCTGATGCCGCCAGGAGAAATTC
CGGGGCTACAACCGCTTGCCCGCAAACACACAAGCTGGTCGTTGTCGCTG
CTGGAAAGAAGTGCCATCGACATCACCCACGACGTTCTAGAGGGCCAGAG
CCTGCCGCGCGGAGGGTATCAGCAGGACGGCTAGAAGAGGGCAGCAGCAG
CAGCAACAGCGGGTGCACTTCTCAATGTGCGGCCAAGGCTACGGCCACTC
TACCCAATTTACCCCTGAAACGCCGTCCAGATGCAGCATCCAAGAAACTC
CGCAACACCACCGCCGCGAAGACGAAGCTCGAGAGCCGAATCGCAGCAGG
GGCACTCCCTGCTCTGCCTTCCCTCGCAAACGAGCGCGATGCAACAACAA
CCCCTTCCGGCGGCGGGATGCCACCCCCTCCCAGGGCAGCACCGAAGCGG
CGTGATGTCCACTCCATGACATGTGCCGCGCCCTGGCTGCCCCCTGATGC
CGCCAGGAGAAATTCCGGGGCTACAACCGCTTGCCCGCAAACACACAAGC
TGGTCGTTGTCGCTGCTGGAAAGAAGTGCCATCGACATCACCCACGACGT
TCTAGAGGGCCAGAGCCTGCCGCGCGGAGGGTATCAGCAGGACGGCTAGA
AGAGGGCAGCAGCAGCAGCAACAGCGGGTGCACTTCTCAATGTGCGGCCA
AGGCTACGGCCACTCTACCCAATTTACCCCTGAAACGCCGTCCAGATGCA
GCATCCAAGAAACTCCGCAACACCACCGCCGCGAAGACGAAGCTCGAGAG
CCGAATCGCAGCAGGGGCACTCCCTGCTCTGCCTTCCCTCGCAAACGAGC
GCGATGCAACAACAACCCCTTCCGGCGGCGGGATGCCACCCCCTCCCAGG
GCAGCACCGAAGCGGCGTGATGTCCACTCC
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