mRNA_L-elsbetiae_contig10525.514.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10525.514.1
Unique NamemRNA_L-elsbetiae_contig10525.514.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10525.514.1 vs. uniprot
Match: A0A6H5L4H0_9PHAE (Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H0_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 2.520e-37
Identity = 73/107 (68.22%), Postives = 86/107 (80.37%), Query Frame = -3 
Query:  414 RMDPVALPLMVVPPPRRIRVVFSAESGCIPSCNPALCQRWAFIPPNLKVVGDLAHHLARQLKKQ-GNKSRRSPLVLTLDGFVLPPNESLDILRETDVVTLSLQPGNG 731
            +MD VALP  V   PRRIRVVF A++GC+PS NP L +RW FIPP L V+GDLAHHL RQLK++ G K+R S LVLTLDGFVLPP ESLD+LRETDVVTL+L+  +G
Sbjct:   53 KMDTVALPPAVASSPRRIRVVFKADAGCVPSSNPTLTKRWIFIPPRLTVIGDLAHHLTRQLKRRKGRKARSSSLVLTLDGFVLPPTESLDVLRETDVVTLTLRQSDG 159
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BLAST of mRNA_L-elsbetiae_contig10525.514.1 vs. uniprot
Match: A0A0P0Y9A7_ORYSJ (Coilin n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A0A0P0Y9A7_ORYSJ)

HSP 1 Score: 57.8 bits (138), Expect = 2.580e-7
Identity = 34/91 (37.36%), Postives = 53/91 (58.24%), Query Frame = -3 
Query:  441 MVVPPPR--RIRVVFSAESGCIPSCNPALCQR-WAFIPPNLKVVGDLAHHLARQLKKQGNKSRRSPLVLTLDGFVLPPNESLDILRETDVV 704
            M  PP +  R+R+VF  +     S   +  +R W  +PP L  V DLA H+A + + +  +S  S ++L++DGFVLPP ES  I R+ D++
Sbjct:    1 MATPPAQAVRLRLVFDNQRILRRSLRESGLRRCWLLLPPELSTVSDLAAHIAARFRLR--RSCPSCVILSIDGFVLPPFESTCIFRDNDII 89
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BLAST of mRNA_L-elsbetiae_contig10525.514.1 vs. uniprot
Match: B8BP67_ORYSI (Coilin n=3 Tax=Oryza sativa TaxID=4530 RepID=B8BP67_ORYSI)

HSP 1 Score: 60.5 bits (145), Expect = 9.220e-7
Identity = 39/106 (36.79%), Postives = 59/106 (55.66%), Query Frame = -3 
Query:  441 HPRTWSRMDPVALPLMVVPPPR--RIRVVFSAESGCIPSCNPALCQR-WAFIPPNLKVVGDLAHHLARQLKKQGNKSRRSPLVLTLDGFVLPPNESLDILRETDVV 749
            +PR   R  P   P M  PP +  R+R+VF  +     S   +  +R W  +PP L  V DLA H+A + + +  +S  S ++L++DGFVLPP ES  I R+ D++
Sbjct:  121 NPRRPPRCQP---PPMATPPAQAVRLRLVFDNQRILRRSLRESGLRRCWLLLPPELSTVSDLAAHIAARFRLR--RSCPSCVILSIDGFVLPPFESTCIFRDNDII 221
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BLAST of mRNA_L-elsbetiae_contig10525.514.1 vs. uniprot
Match: A0A0E0RG41_ORYRU (Coilin n=7 Tax=Oryza TaxID=4527 RepID=A0A0E0RG41_ORYRU)

HSP 1 Score: 57.8 bits (138), Expect = 6.920e-6
Identity = 34/91 (37.36%), Postives = 53/91 (58.24%), Query Frame = -3 
Query:  441 MVVPPPR--RIRVVFSAESGCIPSCNPALCQR-WAFIPPNLKVVGDLAHHLARQLKKQGNKSRRSPLVLTLDGFVLPPNESLDILRETDVV 704
            M  PP +  R+R+VF  +     S   +  +R W  +PP L  V DLA H+A + + +  +S  S ++L++DGFVLPP ES  I R+ D++
Sbjct:    1 MATPPAQAVRLRLVFDNQRILRRSLRESGLRRCWLLLPPELSTVSDLAAHIAARFRLR--RSCPSCVILSIDGFVLPPFESTCIFRDNDII 89
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BLAST of mRNA_L-elsbetiae_contig10525.514.1 vs. uniprot
Match: A0A452ZID7_AEGTS (Coilin n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452ZID7_AEGTS)

HSP 1 Score: 56.6 bits (135), Expect = 1.040e-5
Identity = 33/94 (35.11%), Postives = 52/94 (55.32%), Query Frame = -3 
Query:  441 PVALPLMVVPPPRRIRVVFSAESGCIPSCNPALCQRWAFIPPNLKVVGDLAHHLARQLKKQGNKSRRSPLVLTLDGFVLPPNESLDILRETDVV 722
            P+A P    P P R+R+VF  ++  +      L + W  + P L  V DL+ H+A + +   ++S    +VLT+DGF LPP ES  I R+ D++
Sbjct:   26 PMATPPAXXPSPVRLRLVFD-KTRLLRRAQRDLRRCWLLLRPELATVADLSAHVAARFRL--HRSCPGGVVLTMDGFALPPFESTCIFRDKDII 116
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10525.514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L4H0_9PHAE2.520e-3768.22Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=8... [more]
A0A0P0Y9A7_ORYSJ2.580e-737.36Coilin n=1 Tax=Oryza sativa subsp. japonica TaxID=... [more]
B8BP67_ORYSI9.220e-736.79Coilin n=3 Tax=Oryza sativa TaxID=4530 RepID=B8BP6... [more]
A0A0E0RG41_ORYRU6.920e-637.36Coilin n=7 Tax=Oryza TaxID=4527 RepID=A0A0E0RG41_O... [more]
A0A452ZID7_AEGTS1.040e-535.11Coilin n=1 Tax=Aegilops tauschii subsp. strangulat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10525contigL-elsbetiae_contig10525:1574..2360 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size788
Cds size429
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815276.5908728-CDS-L-elsbetiae_contig10525:1573..20021622815276.5908728-CDS-L-elsbetiae_contig10525:1573..2002Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10525 1574..2002 +
1691682811.8228242-CDS-L-elsbetiae_contig10525:1573..20021691682811.8228242-CDS-L-elsbetiae_contig10525:1573..2002Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10525 1574..2002 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815276.600627-UTR-L-elsbetiae_contig10525:2002..23601622815276.600627-UTR-L-elsbetiae_contig10525:2002..2360Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10525 2003..2360 +
1691682811.831496-UTR-L-elsbetiae_contig10525:2002..23601691682811.831496-UTR-L-elsbetiae_contig10525:2002..2360Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10525 2003..2360 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10525.514.1prot_L-elsbetiae_contig10525.514.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10525 1574..2002 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10525.514.1

>prot_L-elsbetiae_contig10525.514.1 ID=prot_L-elsbetiae_contig10525.514.1|Name=mRNA_L-elsbetiae_contig10525.514.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
PLSPDDEESSPEEEESSSDEEEEDSSEESSPEEELWAAAALALFFAGVCA
FFAEAADEEPTFRLLPAAAAGAEGSAAGARRFLPPALAFRAAGVATVAPL
RAFWPRFFFFNDTLPFCLFSLKLLPPPPPPPPLPSLPSPLPG*
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mRNA from alignment at L-elsbetiae_contig10525:1574..2360+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10525.514.1 ID=mRNA_L-elsbetiae_contig10525.514.1|Name=mRNA_L-elsbetiae_contig10525.514.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=787bp|location=Sequence derived from alignment at L-elsbetiae_contig10525:1574..2360+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCTGTCACCAGATGACGAGGAGTCGTCTCCGGAAGAAGAGGAATCCTC
GTCTGATGAAGAAGAAGAGGATTCGTCGGAGGAATCCTCCCCCGAGGAAG
AACTCTGGGCGGCCGCCGCGCTCGCGCTTTTCTTCGCCGGAGTCTGTGCC
TTCTTTGCAGAGGCTGCAGACGAGGAGCCGACCTTCCGCCTTTTGCCGGC
GGCGGCCGCGGGTGCTGAAGGTTCTGCGGCGGGCGCTCGTCGTTTCTTGC
CCCCGGCGCTAGCTTTCCGGGCAGCGGGAGTTGCAACAGTTGCGCCGCTT
AGAGCCTTCTGGCCGCGCTTCTTCTTCTTCAACGACACGCTCCCCTTCTG
CTTATTTTCCCTCAAGCTGCTTCCGCCGCCGCCGCCGCCGCCGCCGTTGC
CATCGCTGCCATCGCCGTTGCCCGGCTGAAGCGAGAGAGTCACAACGTCC
GTTTCTCGCAAGATGTCAAGGCTCTCGTTCGGGGGCAACACGAAACCGTC
CAGGGTGAGCACGAGAGGCGAGCGCCGCGACTTGTTGCCCTGCTTCTTGA
GCTGCCGTGCGAGGTGGTGGGCCAGGTCGCCCACTACCTTCAAATTTGGA
GGGATGAAGGCCCATCGCTGACAAAGGGCTGGGTTGCAGCTGGGAATGCA
CCCTGACTCCGCCGAGAACACCACACGGATCCGACGCGGAGGGGGCACTA
CCATCAGTGGTAGGGCTACGGGATCCATCCTTGACCAAGTGCGTGGATGT
GGTGCCTGTCAAGCTAGCCCACCTCCGGTGGCCGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10525:1574..2360+

>mRNA_L-elsbetiae_contig10525.514.1 ID=mRNA_L-elsbetiae_contig10525.514.1|Name=mRNA_L-elsbetiae_contig10525.514.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig10525:1574..2360+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCTGTCACCAGATGACGAGGAGTCGTCTCCGGAAGAAGAGGAATCCTC
GTCTGATGAAGAAGAAGAGGATTCGTCGGAGGAATCCTCCCCCGAGGAAG
AACTCTGGGCGGCCGCCGCGCTCGCGCTTTTCTTCGCCGGAGTCTGTGCC
TTCTTTGCAGAGGCTGCAGACGAGGAGCCGACCTTCCGCCTTTTGCCGGC
GGCGGCCGCGGGTGCTGAAGGTTCTGCGGCGGGCGCTCGTCGTTTCTTGC
CCCCGGCGCTAGCTTTCCGGGCAGCGGGAGTTGCAACAGTTGCGCCGCTT
AGAGCCTTCTGGCCGCGCTTCTTCTTCTTCAACGACACGCTCCCCTTCTG
CTTATTTTCCCTCAAGCTGCTTCCGCCGCCGCCGCCGCCGCCGCCGTTGC
CATCGCTGCCATCGCCGTTGCCCGGCTGACCGCTGTCACCAGATGACGAG
GAGTCGTCTCCGGAAGAAGAGGAATCCTCGTCTGATGAAGAAGAAGAGGA
TTCGTCGGAGGAATCCTCCCCCGAGGAAGAACTCTGGGCGGCCGCCGCGC
TCGCGCTTTTCTTCGCCGGAGTCTGTGCCTTCTTTGCAGAGGCTGCAGAC
GAGGAGCCGACCTTCCGCCTTTTGCCGGCGGCGGCCGCGGGTGCTGAAGG
TTCTGCGGCGGGCGCTCGTCGTTTCTTGCCCCCGGCGCTAGCTTTCCGGG
CAGCGGGAGTTGCAACAGTTGCGCCGCTTAGAGCCTTCTGGCCGCGCTTC
TTCTTCTTCAACGACACGCTCCCCTTCTGCTTATTTTCCCTCAAGCTGCT
TCCGCCGCCGCCGCCGCCGCCGCCGTTGCCATCGCTGCCATCGCCGTTGC
CCGGCTGA
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