mRNA_L-elsbetiae_contig10518.505.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10518.505.1
Unique NamemRNA_L-elsbetiae_contig10518.505.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10518.505.1 vs. uniprot
Match: A0A6H5KHL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHL7_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 2.740e-43
Identity = 81/124 (65.32%), Postives = 93/124 (75.00%), Query Frame = 1 
Query:    1 IQGMEIPDGFRLKMSPPDSLDNSLLQCGLLVRLGMGWFGGLITRQSQKRTSHMYDYRVLLEKDQRPRSMKLPLEMYSGDVEAVVGSWVLLEACTAGQ--GATALATSR-SGRVLRANVTNVDQE 363
            I+ MEIPDGFR++ S P +LDN LLQ GLLVRLGMGWFGGLITRQSQ+RT H+YDYRV L+ DQ  R MKL LEMY GD +AVVGSW+LLE  T  Q  G+ A  TS  +GR  R NV  +DQE
Sbjct:   19 IRAMEIPDGFRIQASTPAALDNLLLQRGLLVRLGMGWFGGLITRQSQERTRHLYDYRVHLDLDQSTRGMKLQLEMYKGDPDAVVGSWILLERNTVEQVDGSGATGTSGVAGRERRPNVILIDQE 142
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BLAST of mRNA_L-elsbetiae_contig10518.505.1 vs. uniprot
Match: A0A6H5KA94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA94_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 1.520e-40
Identity = 76/122 (62.30%), Postives = 87/122 (71.31%), Query Frame = 1 
Query:    1 IQGMEIPDGFRLKMSPPDSLDNSLLQCGLLVRLGMGWFGGLITRQSQKRTSHMYDYRVLLEKDQRPRSMKLPLEMYSGDVEAVVGSWVLLEACTAGQGATALATSRSGRVLRANVTNVDQEG 366
            IQGMEIP GFR++ + P +L   LL+ G+LVRLGMGWFGGLIT+Q QK T H+YDY V LE DQ  R MKLPL+ YSGD +A VGSWVLLE           + SRSGRV R NVT VDQEG
Sbjct:   34 IQGMEIPAGFRIQDAKPVALGRLLLRRGVLVRLGMGWFGGLITQQYQKDTRHLYDYCVQLELDQSTRKMKLPLDKYSGDSDAAVGSWVLLE-----------SVSRSGRVRRTNVTLVDQEG 144
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BLAST of mRNA_L-elsbetiae_contig10518.505.1 vs. uniprot
Match: A0A6H5JRS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS4_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 4.090e-40
Identity = 79/144 (54.86%), Postives = 93/144 (64.58%), Query Frame = 1 
Query:    1 IQGMEIPDGFRLKMSPPDSLDNSLLQCGLLVRLGMGWFGGLITRQSQKRTSHMYDYRVLLEKDQRPRSMKLPLEMYSGDVEAVVGSWVLLEACTAGQGATALATSRSGRVLRANVTNVDQEG*E*LHSFAVHVCTIRLVLSGDG 432
            IQGMEIP GFR++ + P +L   LL+ G+LVRLGMGWFGGLIT+QSQK T H+YDY V LE DQ  R MKLPL+  SGD++A VGSWVL E           + SRSGRV R NVT VDQEG + L    V  C     +   G
Sbjct:   10 IQGMEIPAGFRIQEAKPVALGRLLLRRGVLVRLGMGWFGGLITQQSQKDTRHLYDYCVQLELDQSTRKMKLPLDKCSGDLDAAVGSWVLRE-----------SISRSGRVRRTNVTLVDQEGGQLLLHALVFSCIDSRTIVAHG 142
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BLAST of mRNA_L-elsbetiae_contig10518.505.1 vs. uniprot
Match: A0A6H5JXN2_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN2_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 4.180e-39
Identity = 80/122 (65.57%), Postives = 94/122 (77.05%), Query Frame = 1 
Query:    1 IQGMEIPDGFRLKMSPPDSLDNSLLQCGLLVRLGMGWFGGLITRQSQKRTSHMYDYRVLLEKDQRPRSMKLPLEMYSGDVEAVVGSWVLLEACTAGQ--GATALATSR-SGRVLRANVTNVD 357
            I+ MEIPDGFR++ S P +LDNSLLQ GLLVRLGMGWFGG+ITRQSQ+RT H+YDYRV L+ D+  RSMKLPLEMY GD +AVVGSW+LLE  T  Q  G+ A  TS  +GR  R NV  +D
Sbjct:  549 IRAMEIPDGFRIQASTPAALDNSLLQRGLLVRLGMGWFGGVITRQSQERTRHLYDYRVHLDLDRSTRSMKLPLEMYKGDPDAVVGSWILLERNTVEQVDGSGATGTSGVAGRERRPNVILID 670
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BLAST of mRNA_L-elsbetiae_contig10518.505.1 vs. uniprot
Match: A0A6H5KHD5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD5_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 3.110e-38
Identity = 74/121 (61.16%), Postives = 86/121 (71.07%), Query Frame = 1 
Query:    4 QGMEIPDGFRLKMSPPDSLDNSLLQCGLLVRLGMGWFGGLITRQSQKRTSHMYDYRVLLEKDQRPRSMKLPLEMYSGDVEAVVGSWVLLEACTAGQGATALATSRSGRVLRANVTNVDQEG 366
            QGMEIP GFRL+ S P +LD SLLQ G+LVRLGMGWFGGLI +QS +R  H+YDY V LE D   R+MKLPL+ YSGD +A VGSWVLLE           + SR+GRV   NVT VDQ+G
Sbjct:   28 QGMEIPAGFRLQESTPAALDRSLLQLGVLVRLGMGWFGGLIIQQSPQR--HLYDYCVQLEVDHSTRNMKLPLDTYSGDPDAAVGSWVLLE-----------SVSRAGRVRTPNVTLVDQDG 135
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BLAST of mRNA_L-elsbetiae_contig10518.505.1 vs. uniprot
Match: A0A6H5K0X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0X8_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 3.490e-38
Identity = 74/122 (60.66%), Postives = 85/122 (69.67%), Query Frame = 1 
Query:    1 IQGMEIPDGFRLKMSPPDSLDNSLLQCGLLVRLGMGWFGGLITRQSQKRTSHMYDYRVLLEKDQRPRSMKLPLEMYSGDVEAVVGSWVLLEACTAGQGATALATSRSGRVLRANVTNVDQEG 366
            IQGMEIP GF ++ + P  L+  LL+ G+LVRLGMGWFGGLIT+QSQK   H+YDY V LE  Q  R MKLPL+ YSGD +A VGSWVLLE           + SRSGRV R NVT VDQEG
Sbjct:   76 IQGMEIPAGFHIQEAKPVVLERLLLRRGVLVRLGMGWFGGLITQQSQKDIRHLYDYCVQLELHQSTRKMKLPLDKYSGDSDAAVGSWVLLE-----------SISRSGRVRRTNVTLVDQEG 186
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BLAST of mRNA_L-elsbetiae_contig10518.505.1 vs. uniprot
Match: A0A6H5JYC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYC4_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 7.790e-38
Identity = 79/134 (58.96%), Postives = 92/134 (68.66%), Query Frame = 1 
Query:    1 IQGMEIPDGFRLKMSPPDSLDNSLLQCGLLVRLGMGWFGGLITRQSQKRTSHMYDYRVLLEKDQRPRSMKLPLEMYSGDVEAVVGSWVLLEACTAGQGATALATSRSGRVLRANVTNVDQEG*E*LHSFAVHVC 402
            IQGMEIP GFR++ + P +LD  LL+ G+LVRLGMGWFGGLIT+QSQK T H+YDY V LE DQ  R +KLPL+ YS D +A VGSWVLLE           + SRSGRV R NVT VDQEG + L    V  C
Sbjct:  319 IQGMEIPAGFRIQEANPVALDRLLLRRGVLVRLGMGWFGGLITQQSQKDTRHVYDYCVQLELDQSTRKIKLPLDKYSRDSDAAVGSWVLLE-----------SISRSGRVRRTNVTLVDQEGRQLLLHALVFTC 441
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BLAST of mRNA_L-elsbetiae_contig10518.505.1 vs. uniprot
Match: A0A6H5JHU0_9PHAE (Transcriptionfactor protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHU0_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 3.440e-37
Identity = 76/122 (62.30%), Postives = 87/122 (71.31%), Query Frame = 1 
Query:    1 IQGMEIPDGFRLKMSPPDSLDNSLLQCGLLVRLGMGWFGGLITRQSQKRTSHMYDYRVLLEKDQRPRSMKLPLEMYSGDVEAVVGSWVLLEACTAGQGATALATSRSGRVLRANVTNVDQEG 366
            IQGMEIP GFR+  + P +LD  LL+ G+LVRLGMGWFG LIT+QSQK T H+YDY V LE DQ  R MKLPL+ YSGD +A VG+WVLLE           + SRSGRV R NVT VDQEG
Sbjct:  374 IQGMEIPAGFRIPEAKPVALDRLLLRRGVLVRLGMGWFGRLITQQSQKDTRHLYDYCVQLELDQSTRKMKLPLDKYSGDSDAAVGAWVLLE-----------SISRSGRVRRTNVTLVDQEG 484
[Close]
BLAST of mRNA_L-elsbetiae_contig10518.505.1 vs. uniprot
Match: A0A6H5JHV4_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHV4_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 4.300e-37
Identity = 77/122 (63.11%), Postives = 88/122 (72.13%), Query Frame = 1 
Query:    1 IQGMEIPDGFRLKMSPPDSLDNSLLQCGLLVRLGMGWFGGLITRQSQKRTSHMYDYRVLLEKDQRPRSMKLPLEMYSGDVEAVVGSWVLLEACTAGQGATALATSRSGRVLRANVTNVDQEG 366
            IQGMEIP GFR++ + P +LD  LL+ G+LVRLGMGWFGGLIT+QSQK T H+YDY V LE DQ  R MKLPL+ YSGD +A VGSWVLLE           + SRSG V R NVT VDQEG
Sbjct:  591 IQGMEIPAGFRIQEAKPVALDRLLLRRGVLVRLGMGWFGGLITQQSQKDTRHLYDYCVQLELDQSTRKMKLPLDKYSGDSDAAVGSWVLLE-----------SISRSGWVRRTNVTLVDQEG 701
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BLAST of mRNA_L-elsbetiae_contig10518.505.1 vs. uniprot
Match: A0A6H5JTC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC1_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 6.830e-37
Identity = 76/124 (61.29%), Postives = 87/124 (70.16%), Query Frame = 1 
Query:    1 IQGMEIPDGFRLKM--SPPDSLDNSLLQCGLLVRLGMGWFGGLITRQSQKRTSHMYDYRVLLEKDQRPRSMKLPLEMYSGDVEAVVGSWVLLEACTAGQGATALATSRSGRVLRANVTNVDQEG 366
            IQGMEIP GFR ++  + P +LD  LL+ G+LVRLGMGWF GLIT+QSQK T H+YDY V LE DQ  R+MKLPL+ YSGD +A  GSWVLLE             SRSGRV R NVT VDQEG
Sbjct:  203 IQGMEIPAGFRFRIQEAKPVALDRLLLRRGVLVRLGMGWFEGLITQQSQKDTRHLYDYSVQLELDQSTRTMKLPLDKYSGDSDAAGGSWVLLE-----------GISRSGRVRRTNVTLVDQEG 315
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10518.505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHL7_9PHAE2.740e-4365.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA94_9PHAE1.520e-4062.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRS4_9PHAE4.090e-4054.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXN2_9PHAE4.180e-3965.57C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KHD5_9PHAE3.110e-3861.16Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0X8_9PHAE3.490e-3860.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYC4_9PHAE7.790e-3858.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHU0_9PHAE3.440e-3762.30Transcriptionfactor protein n=1 Tax=Ectocarpus sp.... [more]
A0A6H5JHV4_9PHAE4.300e-3763.11HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JTC1_9PHAE6.830e-3761.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10518contigL-elsbetiae_contig10518:4065..4496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue9.4e-27
Seed eggNOG ortholog2880.D7FI08
Hectar predicted targeting categoryother localisation
EggNOG OGs2DCSR@1,2S5KN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size432
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10518.505.1prot_L-elsbetiae_contig10518.505.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10518 4074..4433 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815275.543607-UTR-L-elsbetiae_contig10518:4064..40731622815275.543607-UTR-L-elsbetiae_contig10518:4064..4073Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10518 4065..4073 +
1691682811.1544838-UTR-L-elsbetiae_contig10518:4064..40731691682811.1544838-UTR-L-elsbetiae_contig10518:4064..4073Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10518 4065..4073 +
1622815275.5778475-UTR-L-elsbetiae_contig10518:4433..44961622815275.5778475-UTR-L-elsbetiae_contig10518:4433..4496Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10518 4434..4496 +
1691682811.1760406-UTR-L-elsbetiae_contig10518:4433..44961691682811.1760406-UTR-L-elsbetiae_contig10518:4433..4496Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10518 4434..4496 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815275.5673785-CDS-L-elsbetiae_contig10518:4073..44331622815275.5673785-CDS-L-elsbetiae_contig10518:4073..4433Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10518 4074..4433 +
1691682811.1641674-CDS-L-elsbetiae_contig10518:4073..44331691682811.1641674-CDS-L-elsbetiae_contig10518:4073..4433Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10518 4074..4433 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10518.505.1

>prot_L-elsbetiae_contig10518.505.1 ID=prot_L-elsbetiae_contig10518.505.1|Name=mRNA_L-elsbetiae_contig10518.505.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
MEIPDGFRLKMSPPDSLDNSLLQCGLLVRLGMGWFGGLITRQSQKRTSHM
YDYRVLLEKDQRPRSMKLPLEMYSGDVEAVVGSWVLLEACTAGQGATALA
TSRSGRVLRANVTNVDQEG*
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mRNA from alignment at L-elsbetiae_contig10518:4065..4496+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10518.505.1 ID=mRNA_L-elsbetiae_contig10518.505.1|Name=mRNA_L-elsbetiae_contig10518.505.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=432bp|location=Sequence derived from alignment at L-elsbetiae_contig10518:4065..4496+ (Laminarionema elsbetiae ELsaHSoW15)
ATACAGGGCATGGAGATCCCGGACGGGTTTCGCCTGAAGATGTCTCCACC
CGACTCTTTGGACAATTCGCTACTGCAGTGTGGACTACTCGTCCGGCTGG
GCATGGGTTGGTTTGGTGGTCTGATCACTCGGCAATCTCAGAAGCGTACT
AGCCACATGTACGACTACCGCGTGCTTCTCGAGAAGGACCAGCGTCCACG
TAGCATGAAGCTGCCGTTGGAAATGTACAGTGGAGACGTGGAGGCGGTTG
TGGGCTCATGGGTGCTGCTCGAGGCATGCACGGCAGGGCAGGGTGCCACT
GCTTTGGCTACAAGTAGATCGGGAAGGGTCCTGAGGGCGAACGTGACCAA
TGTGGATCAAGAAGGCTGAGAGTGACTTCATTCCTTTGCCGTACATGTAT
GTACCATTCGGCTTGTTTTGTCAGGAGACGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10518:4065..4496+

>mRNA_L-elsbetiae_contig10518.505.1 ID=mRNA_L-elsbetiae_contig10518.505.1|Name=mRNA_L-elsbetiae_contig10518.505.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig10518:4065..4496+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGATCCCGGACGGGTTTCGCCTGAAGATGTCTCCACCCGACTCTTT
GGACAATTCGCTACTGCAGTGTGGACTACTCGTCCGGCTGGGCATGGGTT
GGTTTGGTGGTCTGATCACTCGGCAATCTCAGAAGCGTACTAGCCACATG
TACGACTACCGCGTGCTTCTCGAGAAGGACCAGCGTCCACGTAGCATGAA
GCTGCCGTTGGAAATGTACAGTGGAGACGTGGAGGCGGTTGTGGGCTCAT
GGGTGCTGCTCGAGGCATGCACGGCAGGGCAGGGTGCCACTGCTTTGGCT
ACAAGTAGATCGGGAAGGGTCCTGAGGGCGAACGTGACCAATGTGGATCA
AGAAGGCTGAATGGAGATCCCGGACGGGTTTCGCCTGAAGATGTCTCCAC
CCGACTCTTTGGACAATTCGCTACTGCAGTGTGGACTACTCGTCCGGCTG
GGCATGGGTTGGTTTGGTGGTCTGATCACTCGGCAATCTCAGAAGCGTAC
TAGCCACATGTACGACTACCGCGTGCTTCTCGAGAAGGACCAGCGTCCAC
GTAGCATGAAGCTGCCGTTGGAAATGTACAGTGGAGACGTGGAGGCGGTT
GTGGGCTCATGGGTGCTGCTCGAGGCATGCACGGCAGGGCAGGGTGCCAC
TGCTTTGGCTACAAGTAGATCGGGAAGGGTCCTGAGGGCGAACGTGACCA
ATGTGGATCAAGAAGGCTGA
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