mRNA_L-elsbetiae_contig10515.504.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig10515.504.1 vs. uniprot
Match: D7FMV2_ECTSI (Similar to kinesin-related protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV2_ECTSI) HSP 1 Score: 377 bits (968), Expect = 5.310e-109 Identity = 379/912 (41.56%), Postives = 449/912 (49.23%), Query Frame = 1
Query: 1 KAGDTVLVAGANGARLMSATGDTYLGASDANGTVVLEGGSAILGAAPTVSFSAAKDAPPSRAFRPDAADQSAKDQRRLPWARGGYLNLTAGAARFGGPAGGAGGGGSASVEADQERVHLRASNSSLLRVSSADISLRTPVIVLFSASPTVLAARGSNHLGDA---------PASDHPTPPAKESAGPEIEG-APWSRLGLD-GGALGINATASAELETPGASLRLVGRRCSSGSKTGADSSGCGGSSGSANGEKVEDGLLGTSGGRALGLGEFVADADAVLIRARSASAGVSIVA-DGAKPRALADARGXXXXXXEAVAGGRLEVSAEGVSVEGASMSLAASRRVSLRVVGSSTEGREGPSGGKIAGVVQEGEG----GSSSVDMGDWGVRVLAGVPAEPSERANGSI-----------FLRAASGLVLAASEVAISQGDGG----------------------EXXXXXXXXXXXGLWIKDSALTGRAEDHVLLQAGSSSWAARGNPEGGKTTASSQISLREGWIHVRAGGDAGHASRAATAGGSEAFLEXXXXXXGR---------------------RKGLLVEVAGPANVSSTEGLQLQTAGEICVKSSSRTLLRSPRGILLSAEEEGEEEQANAGGG------------------ALNGAAAGRGDKKGQRQGQPRPGEGGQILLAPGTGSGVGIGPGFSSRDLVGAAPGAIKTPRACFPRRMP---WSPRLLRAVIRACLCCPLAAGSTSAVRFGSEGLPYSGGLEVRHHRDGPAGDVIVLELGSSPGRVVGDARGRWGVGAVPRPGGTKATPQLAAALHVFGAPAAAEAXXXXXXXXXXXXXXXXXXXXXXXPVA-VLVEPAAGSTGVVQLLS----DCEGGLPCPSPAA-NAIVLSSSSRQSGD 2445
+A DT+L AG NG R+ S+ GD + A+ +G+VV+ GG AI+G APTVSF+A A YLNL+ AA GGP GG GGG A +EAD E V LRASNSSLLRVS+A++S+ TP I L S+SP AA P P ++ G G + L LD G + + A+ S +ETPGA ++L GRR G G A G + + LG G VA+A V IRA SAGVS+VA DGA+ RA A+ A AGGRLEV EGVS G S SL +S RV+LRV G S + R S GV EG S+ V++GDWGVRVLAG A L A S LV A ++AIS G E XXXXXXXGLW ALTGRA++ VLLQAG S + + +G + A S IS+ E WIH+ AGG G +S A + A XXXXXX RKGL+VE G AN+SSTE L+L+ G I + S + T L SPRGILLS N GG +L+GA G G GQ EGG +LLAPG GS G GFSSR L AA A+ + A PR M WSPR A +ACLC L GS SAVRFG EGLPYSGGLEVRHH +GP GD +VLEL SSPGRVVGDARGRWGVGAVP T A QL+AALHVF A PVA VLVE AGS GV+Q+LS +P SPA N IVLSS RQSG+
Sbjct: 489 EATDTLLAAGRNGVRVTSSAGDVRVDANGPDGSVVVRGGGAIVGVAPTVSFTAETAAXXXXXXXXXXXXXXXXXXXXXXX----YLNLSVEAATIGGPQGGEGGG--ALLEADDE-VRLRASNSSLLRVSAAEVSVHTPAIFLRSSSPLTAAAXXXXXXXXXXXXXXXXXXPPQQPPQTTGRQDPGARGPGPTAAAELSLDDSGGVAVTASGSIGMETPGAFVQLSGRRS--------------GGDGLAAGGRDDXXXLGRG-------GLLVAEAGDVRIRA---SAGVSVVAADGAEARAWAE---EGASNGTAAAGGRLEVFPEGVSAAGTSTSLDSSERVTLRV-GGSAKRRTAVSPESDGGVQSAAEGEEVESSAIVELGDWGVRVLAGASAXXXXXXXXXXXXXXXXXXXXXLLNAGSRLVFVAPQLAISHVGGXXXXXXXEGSARRHGAAGSGTIIEDPFSXXXXXXXGLWSDGLALTGRADERVLLQAGLGSTSESSSKKGAQDRAGSHISVEESWIHLCAGGG-GDSSLPALSSSRMASXXXXXXXXXXXXXXXXXSGCTGGLGGGEGPSRKGLMVEAIGEANISSTEDLRLRAEGRIQISSPNDTSLYSPRGILLSGSS-----PRNGDGGXXXXXXXXXXSADHKESPSLDGAGLGGKGHNGLGLGQE---EGGHVLLAPGAGSXXXXGRGFSSRHLASAA--AVTSGSAGLPRSMLSLLWSPR---AGAQACLCFHLEEGSRSAVRFGCEGLPYSGGLEVRHHLEGPGGDTLVLELASSPGRVVGDARGRWGVGAVPDADATGAPTQLSAALHVFAA---------VPLPTVAASSGLGGGEPTKPPVASVLVESPAGSAGVMQMLSVGGSSSRPSVPELSPAPDNTIVLSS--RQSGE 1340
BLAST of mRNA_L-elsbetiae_contig10515.504.1 vs. uniprot
Match: A0A6H5KPL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPL0_9PHAE) HSP 1 Score: 258 bits (659), Expect = 1.450e-68 Identity = 329/835 (39.40%), Postives = 392/835 (46.95%), Query Frame = 1
Query: 223 QRRLPWARGGYLNLTAGAARFGGPAGGAGGGGSASVEADQERVHLRASNSSLLRVSSADISLRTPVIVLFSASPTVLAARGSNHL--------GDAPASDHPTPPAKESAGPEIEG-APWSRLGL---DGGALGINATASAELETPGASLRLVGRRCSSGSKTGADSSGCGGSSGSANGEKVEDGLLGTSGGRALGLGEFVADADAVLIRARSASAGVSIVA-DGAKPRALADARGXXXXXXEAVAGGRLEVSAEGVSVEGASMSLAASRRVSLRVVGSS---TEGREGPSGGKIAGVVQEGEGGSSSVDMGDWGVRVLA-------GVPAEPSERANGSIFLRAASGLVLAASEVAISQGDGG-----------------------EXXXXXXXXXXXGLWIKDSALTGRAEDHVLLQAGSSSWAARGNPEGGKTTASSQI----------------SLREGWIHVRAGGDA---GHASRAATAGGSEAFLEXXXXXXGRRKGLLVEVAGPANVSSTEGLQLQTAGEICVKSSSRTLLRSPRGILLSAEE-----------EGEEEQANAGGGALNGAAAGRGDKKGQRQGQPRPGEGGQILLAPGTGSGVGIGPGFSSRDLVGAAPGAIKT----------PRACFPRRMPWSPRLLRAVIRACLCCPLAAGSTSAVRFGSEGLPYSGGLEVRHHRDGPAGDVIVLELGSSPGRVVGDARGRWGVGAVPRPGGTKATPQLAAALHVFGAPAAAEAXXXXXXXXXXXXXXXXXXXXXXXPVA-VLVEPAAGSTGVVQLLSDCEGG------LPCPSPAA-NAIVLSSSSRQSGD 2445
Q R P GGYL LT A GGP GG GGG A +EAD E V LR SNSSLLRVS+A++SL+TP IVL S+SP G PA PP P I G P + L D G + + A+ S +ETPGA ++L GRR +G D SG +GE ++ G L VA+A V I ASAGVS+VA DG RA A+ A AGGRLEV GVS GAS SL AS RV+LRV G + T GG + +E S+ V++GDWGVRV V A + +I L A S LV A ++AIS GG XXXXXXXXXXXGLW ALTGRA++ VLLQAG S + GGK +++ + S R G+ V G + H R XXXXXX G+ V VA A + L+L+ G I + S + T L SPRGILLS +G + +L+GA GR G GQ EGG +LLAPG GSGVGIG GFSSR L AA G I T P + +RM S + A + + G G SGGLEVRHH +GP GD +VLEL SSPGRVVGDARGRWG+GAVP T PQL+AALHVF A PVA VLVE AGS GV+Q+LS GG +P SPA N IVLSS R SGD
Sbjct: 506 QERAPG--GGYLTLTVETATIGGPQGGEGGG--ALLEADDE-VRLRVSNSSLLRVSAAEVSLQTPAIVLRSSSPLTAXXXXXXXXXXXXXXGDGRDPAPLQQPPPTTGRQDPGIRGPGPTAAAELSLDDSGDVAVAASGSIGMETPGAFVQLSGRR------SGGDGLAA---SGRDDGEGLDRGGL------------LVAEAGDVRI---IASAGVSVVATDGDDARACAE---QGASNGTAAAGGRLEVFPGGVSAAGASTSLDASERVALRVGGLAKRRTAVSSESDGGVQSAAEREEVESSAIVELGDWGVRVSLRWLLKPLSVTAMSLLLKSSTILLNAGSRLVFVAPQLAISHVGGGGAGVGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLWSDGLALTGRADERVLLQAGLRST----SESGGKFESATAVTAAKKAPKTVPVVISRSKRAGYTFVPEGVETIPCQHYPRPERHXXXXXXXXXXXXXX-XXAGVGVPVASVAG----KDLRLRAEGSIQISSPNDTSLYSPRGILLSGSSPRNDGGXXXXXDGTPSADHKESPSLDGAGLGRKGHNGLGLGQE---EGGHVLLAPGAGSGVGIGRGFSSRHLARAAAGTIPTLLYVTNATDHPTSHQRQRMAPS-------LDALVAMESSGGDAGVSVLSPRG---SGGLEVRHHLEGPGGDTLVLELASSPGRVVGDARGRWGIGAVPDADATGVPPQLSAALHVFAA---------VSLPTVAAPSGLESGEPTMPPVASVLVESPAGSAGVMQMLS--VGGSRSRPSVPELSPAPDNTIVLSS--RHSGD 1273 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10515.504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10515.504.1 >prot_L-elsbetiae_contig10515.504.1 ID=prot_L-elsbetiae_contig10515.504.1|Name=mRNA_L-elsbetiae_contig10515.504.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=815bp KAGDTVLVAGANGARLMSATGDTYLGASDANGTVVLEGGSAILGAAPTVSback to top mRNA from alignment at L-elsbetiae_contig10515:133..6757- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig10515.504.1 ID=mRNA_L-elsbetiae_contig10515.504.1|Name=mRNA_L-elsbetiae_contig10515.504.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6625bp|location=Sequence derived from alignment at L-elsbetiae_contig10515:133..6757- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig10515:133..6757- >mRNA_L-elsbetiae_contig10515.504.1 ID=mRNA_L-elsbetiae_contig10515.504.1|Name=mRNA_L-elsbetiae_contig10515.504.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4890bp|location=Sequence derived from alignment at L-elsbetiae_contig10515:133..6757- (Laminarionema elsbetiae ELsaHSoW15)back to top |