mRNA_L-elsbetiae_contig1051.501.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1051.501.1
Unique NamemRNA_L-elsbetiae_contig1051.501.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1051.501.1 vs. uniprot
Match: D8LC50_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC50_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 1.560e-13
Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:  151 DDDHLEVISKADELSNLQGNIIIPRTRRSAAIASQRRTASEIGKFVGG 294
            DDD LE +SK DELS L+GNII PR RR AAIASQRRTASEIGKFVGG
Sbjct:   63 DDDRLEAVSK-DELSALKGNIIYPRARRKAAIASQRRTASEIGKFVGG 109
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BLAST of mRNA_L-elsbetiae_contig1051.501.1 vs. uniprot
Match: A0A6H5J8X7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8X7_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.220e-13
Identity = 53/91 (58.24%), Postives = 57/91 (62.64%), Query Frame = 1 
Query:  151 DDDHLEVISKADELSNLQGNIIIPRTRRSAAIASQRRTASEIGKFVGGXXXXXXXXXXXXXXXDGEVGGDFSTAAAGAADGESDEEAELEF 423
            DDD LE +SK DELS L+GN+I PR RR AAIASQRRTASEIGKFVGG     XXXX      DGE+GG                EAELEF
Sbjct:  155 DDDRLEAVSK-DELSALKGNVIYPRARRKAAIASQRRTASEIGKFVGGAADDDXXXXSDE---DGELGGXXXXXXXXXXXXXXXXEAELEF 241
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1051.501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LC50_ECTSI1.560e-1381.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J8X7_9PHAE2.220e-1358.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1051contigL-elsbetiae_contig1051:16302..17007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-20_004470.1
Exons2
Model size426
Cds size426
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815275.0553863-CDS-L-elsbetiae_contig1051:16301..164821622815275.0553863-CDS-L-elsbetiae_contig1051:16301..16482Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1051 16302..16482 +
1691682810.8829293-CDS-L-elsbetiae_contig1051:16301..164821691682810.8829293-CDS-L-elsbetiae_contig1051:16301..16482Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1051 16302..16482 +
1622815275.0708005-CDS-L-elsbetiae_contig1051:16762..170071622815275.0708005-CDS-L-elsbetiae_contig1051:16762..17007Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1051 16763..17007 +
1691682810.898424-CDS-L-elsbetiae_contig1051:16762..170071691682810.898424-CDS-L-elsbetiae_contig1051:16762..17007Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1051 16763..17007 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1051.501.1prot_L-elsbetiae_contig1051.501.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1051 16302..17007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1051.501.1

>prot_L-elsbetiae_contig1051.501.1 ID=prot_L-elsbetiae_contig1051.501.1|Name=mRNA_L-elsbetiae_contig1051.501.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=142bp
FLLPSSSPSPEDQAEEEEEASNGGKGKGKGKGKGAVEKRPKKKAKRSDDS
DDDHLEVISKADELSNLQGNIIIPRTRRSAAIASQRRTASEIGKFVGGGA
ADDDDDDDDDSDEDGEVGGDFSTAAAGAADGESDEEAELEF*
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mRNA from alignment at L-elsbetiae_contig1051:16302..17007+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1051.501.1 ID=mRNA_L-elsbetiae_contig1051.501.1|Name=mRNA_L-elsbetiae_contig1051.501.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=706bp|location=Sequence derived from alignment at L-elsbetiae_contig1051:16302..17007+ (Laminarionema elsbetiae ELsaHSoW15)
TTTCTGCTACCATCTTCTTCCCCCTCCCCAGAGGATCAAGCAGAGGAGGA
AGAGGAAGCGAGCAATGGAGGCAAGGGGAAGGGCAAGGGAAAGGGGAAGG
GGGCGGTGGAAAAGCGACCCAAGAAGAAGGCAAAGAGAAGCGACGACTCC
GACGACGACCATCTCGAGGTGATATCCAAAGGTGAGGCAAAGAGTGGTCT
TTTACGGTTCTAGCCGTGATTTTGGAAGTTGGATACACAAAGTAGGATGA
TGACTTGAATAATAATCACCGCCGTCTGGAGAGAGGATGCGCCGTTGATC
GCCACGTGGTTCGAGGCAAGAAACAACGGAGTTCGTTCCCTGCCCCGGCC
CTCCGCCCCCTTCCTATTGTAGCATGCGCTAAACAACGGCCCCGCCCCCT
CCCCCCCCCGGGGGACCATTTTATTTTTATGTTTTCCTCTTCGGCCTCTG
CTCGCTGCAAGCAGACGAACTGTCGAACCTCCAAGGAAACATCATCATCC
CCCGCACGAGACGCAGCGCCGCGATCGCCTCCCAACGGCGCACGGCATCC
GAGATCGGCAAGTTTGTCGGGGGCGGGGCGGCAGACGACGACGACGACGA
CGACGACGACTCGGACGAAGACGGGGAGGTGGGCGGAGACTTCAGCACCG
CGGCGGCCGGCGCTGCGGATGGCGAGAGCGACGAGGAGGCGGAGCTCGAG
TTCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1051:16302..17007+

>mRNA_L-elsbetiae_contig1051.501.1 ID=mRNA_L-elsbetiae_contig1051.501.1|Name=mRNA_L-elsbetiae_contig1051.501.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=852bp|location=Sequence derived from alignment at L-elsbetiae_contig1051:16302..17007+ (Laminarionema elsbetiae ELsaHSoW15)
TTTCTGCTACCATCTTCTTCCCCCTCCCCAGAGGATCAAGCAGAGGAGGA
AGAGGAAGCGAGCAATGGAGGCAAGGGGAAGGGCAAGGGAAAGGGGAAGG
GGGCGGTGGAAAAGCGACCCAAGAAGAAGGCAAAGAGAAGCGACGACTCC
GACGACGACCATCTCGAGGTGATATCCAAAGTTTCTGCTACCATCTTCTT
CCCCCTCCCCAGAGGATCAAGCAGAGGAGGAAGAGGAAGCGAGCAATGGA
GGCAAGGGGAAGGGCAAGGGAAAGGGGAAGGGGGCGGTGGAAAAGCGACC
CAAGAAGAAGGCAAAGAGAAGCGACGACTCCGACGACGACCATCTCGAGG
TGATATCCAAAGCAGACGAACTGTCGAACCTCCAAGGAAACATCATCATC
CCCCGCACGAGACGCAGCGCCGCGATCGCCTCCCAACGGCGCACGGCATC
CGAGATCGGCAAGTTTGTCGGGGGCGGGGCGGCAGACGACGACGACGACG
ACGACGACGACTCGGACGAAGACGGGGAGGTGGGCGGAGACTTCAGCACC
GCGGCGGCCGGCGCTGCGGATGGCGAGAGCGACGAGGAGGCGGAGCTCGA
GTTCTGACAGACGAACTGTCGAACCTCCAAGGAAACATCATCATCCCCCG
CACGAGACGCAGCGCCGCGATCGCCTCCCAACGGCGCACGGCATCCGAGA
TCGGCAAGTTTGTCGGGGGCGGGGCGGCAGACGACGACGACGACGACGAC
GACGACTCGGACGAAGACGGGGAGGTGGGCGGAGACTTCAGCACCGCGGC
GGCCGGCGCTGCGGATGGCGAGAGCGACGAGGAGGCGGAGCTCGAGTTCT
GA
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