mRNA_L-elsbetiae_contig10507.499.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10507.499.1
Unique NamemRNA_L-elsbetiae_contig10507.499.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig10507.499.1 vs. uniprot
Match: A0A6H5J9W8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9W8_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 4.150e-8
Identity = 49/114 (42.98%), Postives = 57/114 (50.00%), Query Frame = 1 
Query:    1 SDFGDFRRHGPGVLG-PPRLDSTCVLPVDAQPSETPQDTPGTAGS-PGMLAVASR----------------------GPLISSRTRARTAASAGASVTTPVYFPPQPRATEAPR 270
            SDFGDFRRH P ++   P   STC    D Q         G AGS P + +VASR                      GPLISSRTRA+T  ++G +VT P YF  QPRAT  PR
Sbjct:  226 SDFGDFRRHAPRMMDVSPPSSSTCT---DHQRPSGVFAVSGLAGSAPRLPSVASRLVPSVASSANKYVHVLSSLPERGPLISSRTRAKTTTASGGTVTDPAYFGRQPRATIVPR 336
[Close]
BLAST of mRNA_L-elsbetiae_contig10507.499.1 vs. uniprot
Match: A0A6H5L323_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L323_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 4.230e-8
Identity = 49/114 (42.98%), Postives = 57/114 (50.00%), Query Frame = 1 
Query:    1 SDFGDFRRHGPGVLG-PPRLDSTCVLPVDAQPSETPQDTPGTAGS-PGMLAVASR----------------------GPLISSRTRARTAASAGASVTTPVYFPPQPRATEAPR 270
            SDFGDFRRH P ++   P   STC    D Q         G AGS P + +VASR                      GPLISSRTRA+T  ++G +VT P YF  QPRAT  PR
Sbjct: 1193 SDFGDFRRHAPRMMDVSPPSSSTCT---DHQRPSGVFAVSGLAGSAPRLPSVASRLVPSVASSANKYVHVLSSLPERGPLISSRTRAKTTTASGGTVTDPAYFGRQPRATIVPR 1303
[Close]
BLAST of mRNA_L-elsbetiae_contig10507.499.1 vs. uniprot
Match: A0A6H5JK47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK47_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 4.270e-8
Identity = 49/114 (42.98%), Postives = 57/114 (50.00%), Query Frame = 1 
Query:    1 SDFGDFRRHGPGVLG-PPRLDSTCVLPVDAQPSETPQDTPGTAGS-PGMLAVASR----------------------GPLISSRTRARTAASAGASVTTPVYFPPQPRATEAPR 270
            SDFGDFRRH P ++   P   STC    D Q         G AGS P + +VASR                      GPLISSRTRA+T  ++G +VT P YF  QPRAT  PR
Sbjct: 1240 SDFGDFRRHAPRMMDVSPPSSSTCT---DHQRPSGVCAVSGLAGSAPRLPSVASRLVPSVASSANKYVHVLSSLPERGPLISSRTRAKTTTASGGTVTDPAYFGRQPRATIVPR 1350
[Close]
BLAST of mRNA_L-elsbetiae_contig10507.499.1 vs. uniprot
Match: A0A6H5KKW5_9PHAE (RT_RNaseH domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW5_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 2.120e-6
Identity = 47/114 (41.23%), Postives = 56/114 (49.12%), Query Frame = 1 
Query:    1 SDFGDFRRHGPGVLG-PPRLDSTCVLPVDAQPSETPQDTPGTAGS-PGMLAVASR----------------------GPLISSRTRARTAASAGASVTTPVYFPPQPRATEAPR 270
            SDFGDFR+H   ++   P   STC    D Q         G AGS P + +VASR                      GPLISSRTRA+T  ++G +VT P YF  QPRAT  PR
Sbjct:  216 SDFGDFRQHAQRMMDVSPPSSSTCT---DHQRPSGVFAVSGLAGSAPRLPSVASRLVPSVAFSANKYVHVLSSLPERGPLISSRTRAKTTTASGGTVTGPAYFGRQPRATIVPR 326
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10507.499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5J9W8_9PHAE4.150e-842.98Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L323_9PHAE4.230e-842.98Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JK47_9PHAE4.270e-842.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKW5_9PHAE2.120e-641.23RT_RNaseH domain-containing protein (Fragment) n=1... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10507contigL-elsbetiae_contig10507:5974..6326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size353
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815275.0158095-CDS-L-elsbetiae_contig10507:5973..63241622815275.0158095-CDS-L-elsbetiae_contig10507:5973..6324Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10507 5974..6324 +
1691682810.8737905-CDS-L-elsbetiae_contig10507:5973..63241691682810.8737905-CDS-L-elsbetiae_contig10507:5973..6324Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10507 5974..6324 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10507.499.1prot_L-elsbetiae_contig10507.499.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10507 5974..6324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10507.499.1

>prot_L-elsbetiae_contig10507.499.1 ID=prot_L-elsbetiae_contig10507.499.1|Name=mRNA_L-elsbetiae_contig10507.499.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
SDFGDFRRHGPGVLGPPRLDSTCVLPVDAQPSETPQDTPGTAGSPGMLAV
ASRGPLISSRTRARTAASAGASVTTPVYFPPQPRATEAPRPSSRRSRSPA
RSRAVAPRPDSPHPSRA
back to top

mRNA from alignment at L-elsbetiae_contig10507:5974..6326+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10507.499.1 ID=mRNA_L-elsbetiae_contig10507.499.1|Name=mRNA_L-elsbetiae_contig10507.499.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=353bp|location=Sequence derived from alignment at L-elsbetiae_contig10507:5974..6326+ (Laminarionema elsbetiae ELsaHSoW15)
TCCGATTTTGGGGACTTCAGACGCCATGGCCCTGGTGTGCTGGGACCGCC
TCGGCTGGATTCCACTTGCGTTCTGCCTGTGGATGCTCAGCCTTCCGAGA
CACCCCAGGACACCCCGGGAACGGCGGGTTCCCCCGGTATGTTGGCTGTA
GCCTCTCGCGGCCCACTTATCTCGTCTCGGACCCGCGCTCGTACGGCAGC
CTCCGCCGGTGCATCGGTAACCACCCCTGTTTACTTCCCGCCTCAGCCGC
GCGCTACCGAGGCCCCAAGACCAAGTAGCCGCCGCTCTAGGAGCCCCGCT
CGCTCCCGCGCTGTTGCGCCACGGCCGGACAGCCCGCACCCTTCGCGGGC
ATC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig10507:5974..6326+

>mRNA_L-elsbetiae_contig10507.499.1 ID=mRNA_L-elsbetiae_contig10507.499.1|Name=mRNA_L-elsbetiae_contig10507.499.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig10507:5974..6326+ (Laminarionema elsbetiae ELsaHSoW15)
TCCGATTTTGGGGACTTCAGACGCCATGGCCCTGGTGTGCTGGGACCGCC
TCGGCTGGATTCCACTTGCGTTCTGCCTGTGGATGCTCAGCCTTCCGAGA
CACCCCAGGACACCCCGGGAACGGCGGGTTCCCCCGGTATGTTGGCTGTA
GCCTCTCGCGGCCCACTTATCTCGTCTCGGACCCGCGCTCGTACGGCAGC
CTCCGCCGGTGCATCGGTAACCACCCCTGTTTACTTCCCGCCTCAGCCGC
GCGCTACCGAGGCCCCAAGACCAAGTAGCCGCCGCTCTAGGAGCCCCGCT
CGCTCCCGCGCTGTTGCGCCACGGCCGGACAGCCCGCACCCTTCGCGGGC
ATCCGATTTTGGGGACTTCAGACGCCATGGCCCTGGTGTGCTGGGACCGC
CTCGGCTGGATTCCACTTGCGTTCTGCCTGTGGATGCTCAGCCTTCCGAG
ACACCCCAGGACACCCCGGGAACGGCGGGTTCCCCCGGTATGTTGGCTGT
AGCCTCTCGCGGCCCACTTATCTCGTCTCGGACCCGCGCTCGTACGGCAG
CCTCCGCCGGTGCATCGGTAACCACCCCTGTTTACTTCCCGCCTCAGCCG
CGCGCTACCGAGGCCCCAAGACCAAGTAGCCGCCGCTCTAGGAGCCCCGC
TCGCTCCCGCGCTGTTGCGCCACGGCCGGACAGCCCGCACCCTTCGCGGG
CA
back to top