mRNA_L-elsbetiae_contig10505.496.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10505.496.1
Unique NamemRNA_L-elsbetiae_contig10505.496.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10505.496.1 vs. uniprot
Match: D7G6X7_ECTSI (Chloroplast 50S ribosomal protein 17 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6X7_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 2.100e-35
Identity = 65/81 (80.25%), Postives = 70/81 (86.42%), Query Frame = 3 
Query:    3 LFEVLGPRYSERPGGYTRIMKLQKPRKGDQADMAIIEFVDRDGELRPARPVGQGLTSNTRGLLDLVEGDFLPKDQKKSGTP 245
            LFEVLGPRY +RPGGYTR+MKLQKPRKGDQADMAIIEFVDR+GELRPAR VGQ     TRGL+DLVE DFL KDQK+S  P
Sbjct:   79 LFEVLGPRYKDRPGGYTRVMKLQKPRKGDQADMAIIEFVDREGELRPARQVGQ-----TRGLVDLVEDDFLTKDQKESSLP 154
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BLAST of mRNA_L-elsbetiae_contig10505.496.1 vs. uniprot
Match: A0A835Z8L6_9STRA (Chloroplast 50S ribosomal protein 17 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8L6_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 9.980e-20
Identity = 42/53 (79.25%), Postives = 47/53 (88.68%), Query Frame = 3 
Query:    3 LFEVLGPRYSERPGGYTRIMKLQKPRKGDQADMAIIEFVDRDGELRPARPVGQ 161
            LF+VLGPRY ERPGGYTRI+KL  PR GD+ADM +IEFVDR GELRPARPVG+
Sbjct:   82 LFKVLGPRYEERPGGYTRILKLATPRLGDKADMCLIEFVDRQGELRPARPVGK 134
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BLAST of mRNA_L-elsbetiae_contig10505.496.1 vs. uniprot
Match: A0A7S2WK90_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WK90_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 8.650e-18
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 3 
Query:    3 LFEVLGPRYSERPGGYTRIMKLQKPRKGDQADMAIIEFVDRDGELRPARPVGQGLTSNTRGLLDLV 200
            L   LGPRY +R GGYTR++KLQ+PR GD+AD A+IE+VDRDGELRPA+P      S T+GL DLV
Sbjct:  124 LLHQLGPRYLDRDGGYTRVLKLQRPRPGDKADRAVIEYVDRDGELRPAKPP----RSTTQGLKDLV 185
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BLAST of mRNA_L-elsbetiae_contig10505.496.1 vs. uniprot
Match: A0A7S3M8Y7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8Y7_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.900e-17
Identity = 47/78 (60.26%), Postives = 55/78 (70.51%), Query Frame = 3 
Query:    3 LFEVLGPRYSERPGGYTRIMKLQKPRKGDQADMAIIEFVDRDGELRPARP---VGQGLTS--NTRGLLDLVEGDFLPK 221
            LFE+LGPRY+ER GGYTR+MKL KPR+GD A MA +EFVDR+GELR ARP    G  + S     G L+L  G  LPK
Sbjct:   79 LFEILGPRYAEREGGYTRVMKLMKPRRGDSAAMAYVEFVDREGELRKARPPQSTGIKMLSMMTVMGKLNLSAG--LPK 154
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BLAST of mRNA_L-elsbetiae_contig10505.496.1 vs. uniprot
Match: A0A7S3QJX6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJX6_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 4.360e-16
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 3 
Query:    3 LFEVLGPRYSERPGGYTRIMKLQKPRKGDQADMAIIEFVDRDGELRPARPVGQGLTSNTRGLLDLVE 203
            LFEVLGPRY +R GGYTR++KL KPR+GD A MA++E+VDR GE+R ARP         +G  DL++
Sbjct:   79 LFEVLGPRYQDREGGYTRVLKLSKPRQGDNAPMAVLEYVDRPGEIRAARP--------PKGRFDLLD 137
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BLAST of mRNA_L-elsbetiae_contig10505.496.1 vs. uniprot
Match: A0A7S0ASE6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ASE6_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.300e-15
Identity = 35/50 (70.00%), Postives = 44/50 (88.00%), Query Frame = 3 
Query:    3 LFEVLGPRYSERPGGYTRIMKLQKPRKGDQADMAIIEFVDRDGELRPARP 152
            LFE+LGPRY ER GGYTR++KL +PR+GD AD+A+IE+VDR GE+R ARP
Sbjct:  117 LFEILGPRYEEREGGYTRVLKLSRPREGDNADLAVIEYVDRPGEVRAARP 166
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BLAST of mRNA_L-elsbetiae_contig10505.496.1 vs. uniprot
Match: A0A7R9U1T3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1T3_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.040e-15
Identity = 40/50 (80.00%), Postives = 42/50 (84.00%), Query Frame = 3 
Query:    3 LFEVLGPRYSERPGGYTRIMKLQKPRKGDQADMAIIEFVDRDGELRPARP 152
            LF VLGPRY ER GGYTRIMKL   RKGD ADMAIIE+VDR+GELR ARP
Sbjct:  103 LFLVLGPRYKERQGGYTRIMKLADRRKGDGADMAIIEYVDREGELRRARP 152
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BLAST of mRNA_L-elsbetiae_contig10505.496.1 vs. uniprot
Match: A0A1E7FQ30_9STRA (Ribosomal protein L17 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FQ30_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 3.730e-15
Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = 3 
Query:    3 LFEVLGPRYSERPGGYTRIMKLQKPRKGDQADMAIIEFVDRDGELRPARP 152
            LFEVLGPRY  R GGYTR++KL KPR GD A MA+IE+VDR GE+RPARP
Sbjct:  107 LFEVLGPRYILRQGGYTRVLKLSKPRAGDNAPMAVIEYVDRPGEIRPARP 156
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BLAST of mRNA_L-elsbetiae_contig10505.496.1 vs. uniprot
Match: A0A7S2LPJ0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LPJ0_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 6.480e-15
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 3 
Query:    3 LFEVLGPRYSERPGGYTRIMKLQKPRKGDQADMAIIEFVDRDGELRPARPVGQGLTSNTRGLLDLV 200
            LFEVLGPRY+ER GGYTR+++L KPR GD A M+IIE+VDR GE+R A+P      S    +L  V
Sbjct:   79 LFEVLGPRYAERDGGYTRVLQLAKPRTGDNAPMSIIEYVDRPGEIRAAKPPASKQKSVLADVLSEV 144
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BLAST of mRNA_L-elsbetiae_contig10505.496.1 vs. uniprot
Match: A0A448ZH03_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZH03_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 7.040e-15
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 3 
Query:    3 LFEVLGPRYSERPGGYTRIMKLQKPRKGDQADMAIIEFVDRDGELRPARPVGQGLTSNTRGLLDLVE 203
            LFEVLGPRY  R GGYTR+MKL +PR GD A MA+IE+VDR GE+R ARP      +++ G+  + +
Sbjct:   95 LFEVLGPRYKFREGGYTRVMKLARPRAGDNAPMAVIEYVDRPGEIRAARPPSIFTATSSNGMNGIED 161
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10505.496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6X7_ECTSI2.100e-3580.25Chloroplast 50S ribosomal protein 17 n=2 Tax=Ectoc... [more]
A0A835Z8L6_9STRA9.980e-2079.25Chloroplast 50S ribosomal protein 17 n=1 Tax=Tribo... [more]
A0A7S2WK90_9STRA8.650e-1863.64Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3M8Y7_9STRA1.900e-1760.26Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3QJX6_9STRA4.360e-1656.72Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S0ASE6_9STRA1.300e-1570.00Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A7R9U1T3_9STRA2.040e-1580.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A1E7FQ30_9STRA3.730e-1574.00Ribosomal protein L17 n=1 Tax=Fragilariopsis cylin... [more]
A0A7S2LPJ0_9STRA6.480e-1557.58Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A448ZH03_9STRA7.040e-1555.22Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10505contigL-elsbetiae_contig10505:672..2091 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.7
Seed ortholog evalue4.2e-18
Seed eggNOG ortholog2880.D7G6X7
KEGG rclassRC00293,RC01792,RC01815,RC02504
KEGG koko:K02879,ko:K14652
KEGG ReactionR00425,R07281
KEGG Pathwayko00740,ko00790,ko01100,ko01110,ko03010,map00740,map00790,map01100,map01110,map03010
KEGG ModuleM00125,M00178,M00840
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005829,GO:0005840,GO:0006996,GO:0007005,GO:0008150,GO:0009987,GO:0015934,GO:0016043,GO:0022625,GO:0022626,GO:0031974,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070013,GO:0071840,GO:0098798,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0203@1,KOG3280@2759
EC3.5.4.25,4.1.99.12
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Ec32 ortholog descriptionRibosomal protein L17
Ec32 orthologEc-01_011850.1
Exons3
Model size824
Cds size189
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10505.496.1prot_L-elsbetiae_contig10505.496.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10505 1086..1515 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815274.7267895-UTR-L-elsbetiae_contig10505:671..7021622815274.7267895-UTR-L-elsbetiae_contig10505:671..702Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10505 672..702 +
1691682810.7691438-UTR-L-elsbetiae_contig10505:671..7021691682810.7691438-UTR-L-elsbetiae_contig10505:671..702Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10505 672..702 +
1622815274.7374806-UTR-L-elsbetiae_contig10505:1057..10851622815274.7374806-UTR-L-elsbetiae_contig10505:1057..1085Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10505 1058..1085 +
1691682810.7803502-UTR-L-elsbetiae_contig10505:1057..10851691682810.7803502-UTR-L-elsbetiae_contig10505:1057..1085Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10505 1058..1085 +
1622815274.772283-UTR-L-elsbetiae_contig10505:1515..20911622815274.772283-UTR-L-elsbetiae_contig10505:1515..2091Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10505 1516..2091 +
1691682810.8081641-UTR-L-elsbetiae_contig10505:1515..20911691682810.8081641-UTR-L-elsbetiae_contig10505:1515..2091Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10505 1516..2091 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815274.7479475-CDS-L-elsbetiae_contig10505:1085..11501622815274.7479475-CDS-L-elsbetiae_contig10505:1085..1150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10505 1086..1150 +
1691682810.7889636-CDS-L-elsbetiae_contig10505:1085..11501691682810.7889636-CDS-L-elsbetiae_contig10505:1085..1150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10505 1086..1150 +
1622815274.7619755-CDS-L-elsbetiae_contig10505:1391..15151622815274.7619755-CDS-L-elsbetiae_contig10505:1391..1515Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10505 1392..1515 +
1691682810.7994928-CDS-L-elsbetiae_contig10505:1391..15151691682810.7994928-CDS-L-elsbetiae_contig10505:1391..1515Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10505 1392..1515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10505.496.1

>prot_L-elsbetiae_contig10505.496.1 ID=prot_L-elsbetiae_contig10505.496.1|Name=mRNA_L-elsbetiae_contig10505.496.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=63bp
MKLQKPRKGDQADMAIIEFVDRDGELRPARPVGQGLTSNTRGLLDLVEGD
FLPKDQKKSGTP*
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mRNA from alignment at L-elsbetiae_contig10505:672..2091+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10505.496.1 ID=mRNA_L-elsbetiae_contig10505.496.1|Name=mRNA_L-elsbetiae_contig10505.496.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1420bp|location=Sequence derived from alignment at L-elsbetiae_contig10505:672..2091+ (Laminarionema elsbetiae ELsaHSoW15)
AGCTCTTCGAGGTGCTTGGACCAAGATACTCGTAAGATACCGCTGTCTAT
ACTCGTAAGCTTGACGCCGTGCAACGTCACTTGTGTGTAGTTCCGGTCAC
CATTTCCCCAGTACATGCTCACGCACGAGGTGTTCATATAGCAGTAGGAG
TCCGGCGACGTTGTCCTGCAAGATGTAGTATTGTAGATAAGTACATCGAG
GTTTGGTATGGGTGGATTGTTGCCGACGAAGCACTGGCGTCGTTTAGTGC
TTGACCTGGTAATTTTCACCATGTTGTTGTTTGGTTCCACTCTGTATGTT
ATGTTTACGGTATGTATCTTCATCGTGTCGCACGCCGTTCCCTATCCTAT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTTGCAGGGAGAGACCAGGAG
GTTACACGCGTATAATGAAGCTGCAGAAGCCGCGTAAAGGAGACCAGGCC
GATATGGCCATCATCGAGTTCGTCGACAGGTGAGAACGTCCAAACAAGTC
TAACCCATCCGCGCAACGCCCCCGTCATACAGTAGTACTCCGGCTTTGAT
TATTGCACTGACTGCGTATGTACCTGGTATTTGTTTTTTGCATTTGTTTT
ATTCAAGACATGTGTCTGGCACTCTTACCTAGAGCTTCGCTGAAACCGCA
ACCCGCTTCTACCTCTCAGTGGTACTGAAAACGGAAACTCCGTGTGCTAC
CTTTTTGACAACACCGACAGGGACGGAGAGCTAAGGCCAGCCCGGCCTGT
AGGTCAAGGACTAACATCAAACACCCGCGGTTTGCTTGACTTGGTGGAAG
GCGACTTTTTGCCAAAGGACCAGAAGAAGTCTGGTACGCCGTGACGGCCC
ACCCCGAGGGGAGGAACTTACGGGACTGTGTGTTGGCGGTGGTGTGTTCA
AGTGTGCGTTGTAGGCGATGCAGATGCAGATGTAGCATTTTTTTTCATCT
TTTTTTTAGCGGGGGTGGAAAGGAGAGGGATGGTGAGGGTGAGGAGGACC
CGAATTAATCGTGTCAAATCTTGATCTTGTTGTGTTGTGTAGTCCTGGTT
ACTGCTGTGTAGACGTAGCACCTGGTGGATGGTATCTATCAGCTGGTGTT
TATCAGCGCAGCAATGATAGTTGGCGCCGGGCGTGTGTGTGTGTGTATGC
GTACATACTAAGGTTACATAGCGCTTACTTGTTCAGCCGTGTTCCAAAAG
CCGAACAGCAATGTTCAATCCATGGATTTTGTGGACGGTCGAATTTGGTA
TCCCACAAGGATGGATGGTGGACGGATTTAGATTAAAATAGGCGCTCATC
GGGCTGTTTCGTGTCACCTTTCGTGGTGACAGTGGTTGGAATATGCAAAC
AGCAACATGCCAGCAGTTTACGGGACAACACTGCTGTTATTTTTTTCCCG
CCTTAATCTTGACTTCTCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10505:672..2091+

>mRNA_L-elsbetiae_contig10505.496.1 ID=mRNA_L-elsbetiae_contig10505.496.1|Name=mRNA_L-elsbetiae_contig10505.496.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=378bp|location=Sequence derived from alignment at L-elsbetiae_contig10505:672..2091+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGCTGCAGAAGCCGCGTAAAGGAGACCAGGCCGATATGGCCATCAT
CGAGTTCGTCGACAGATGAAGCTGCAGAAGCCGCGTAAAGGAGACCAGGC
CGATATGGCCATCATCGAGTTCGTCGACAGGGACGGAGAGCTAAGGCCAG
CCCGGCCTGTAGGTCAAGGACTAACATCAAACACCCGCGGTTTGCTTGAC
TTGGTGGAAGGCGACTTTTTGCCAAAGGACCAGAAGAAGTCTGGTACGCC
GTGAGGACGGAGAGCTAAGGCCAGCCCGGCCTGTAGGTCAAGGACTAACA
TCAAACACCCGCGGTTTGCTTGACTTGGTGGAAGGCGACTTTTTGCCAAA
GGACCAGAAGAAGTCTGGTACGCCGTGA
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