mRNA_L-elsbetiae_contig10499.485.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10499.485.1
Unique NamemRNA_L-elsbetiae_contig10499.485.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10499.485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10499contigL-elsbetiae_contig10499:5771..6473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size703
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10499.485.1prot_L-elsbetiae_contig10499.485.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10499 5784..6188 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815273.1094894-UTR-L-elsbetiae_contig10499:5770..57831622815273.1094894-UTR-L-elsbetiae_contig10499:5770..5783Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10499 5771..5783 +
1691682809.6910172-UTR-L-elsbetiae_contig10499:5770..57831691682809.6910172-UTR-L-elsbetiae_contig10499:5770..5783Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10499 5771..5783 +
1622815273.1361244-UTR-L-elsbetiae_contig10499:6188..64731622815273.1361244-UTR-L-elsbetiae_contig10499:6188..6473Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10499 6189..6473 +
1691682809.7170944-UTR-L-elsbetiae_contig10499:6188..64731691682809.7170944-UTR-L-elsbetiae_contig10499:6188..6473Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10499 6189..6473 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815273.123831-CDS-L-elsbetiae_contig10499:5783..61881622815273.123831-CDS-L-elsbetiae_contig10499:5783..6188Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10499 5784..6188 +
1691682809.7044556-CDS-L-elsbetiae_contig10499:5783..61881691682809.7044556-CDS-L-elsbetiae_contig10499:5783..6188Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10499 5784..6188 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10499.485.1

>prot_L-elsbetiae_contig10499.485.1 ID=prot_L-elsbetiae_contig10499.485.1|Name=mRNA_L-elsbetiae_contig10499.485.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=135bp
MIDTKSHCACVTSPPADTSSLLTVASSLPLTQGQIISLLRLYGNIFLCRL
LLSSCVVCGDDGSGWMMCPKCTFVCCSLYRNSLAAICGQKLKRLRTKLSR
EQLLLLFLTLALQSKTFLRAQGHKTRHTRRREKK*
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mRNA from alignment at L-elsbetiae_contig10499:5771..6473+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10499.485.1 ID=mRNA_L-elsbetiae_contig10499.485.1|Name=mRNA_L-elsbetiae_contig10499.485.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=703bp|location=Sequence derived from alignment at L-elsbetiae_contig10499:5771..6473+ (Laminarionema elsbetiae ELsaHSoW15)
GGGCGCTTGCGTTATGATTGATACGAAAAGTCACTGCGCTTGTGTCACCA
GCCCGCCTGCAGATACCTCATCCCTACTTACTGTGGCCTCTTCTCTGCCG
CTAACACAAGGGCAAATTATATCGTTACTACGACTGTATGGCAACATCTT
CCTCTGCCGTCTACTACTGTCGTCGTGTGTGGTGTGTGGTGATGATGGGT
CGGGTTGGATGATGTGCCCAAAATGCACGTTTGTTTGTTGCTCTTTGTAT
CGCAACTCCCTCGCCGCCATATGTGGTCAAAAACTCAAGAGATTGAGGAC
GAAACTTAGTAGGGAGCAGCTGCTGTTGTTGTTTCTCACATTAGCTCTCC
AGTCCAAAACATTTTTAAGGGCCCAAGGTCACAAAACGAGGCACACTCGA
CGCCGCGAAAAAAAATAAGACAAAAATATAGTACATACGCGCACGGCGGT
ACGAAACTGGACCCCGGGGGGTCTTGCGTCTCGCCAGTTGTGTGTTGGGG
TGTCTCTGCAAGGACGGAGCGTTTGGTGTATGTTTGAGAAAGATATCGGC
AAAAAAATGAAATCAACAGGGGTTTCAGAATAGGAAAAGGGAGCACTTTT
TCGGTCGCAAAAAACATAGCCGAAAAAAGAATAAGAGAGCAACCAACTTG
AAAGTTGGAATTTGTTTCCTTCTGAACTTTCCTTTCGAGTTTGTTTTATG
TTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10499:5771..6473+

>mRNA_L-elsbetiae_contig10499.485.1 ID=mRNA_L-elsbetiae_contig10499.485.1|Name=mRNA_L-elsbetiae_contig10499.485.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=810bp|location=Sequence derived from alignment at L-elsbetiae_contig10499:5771..6473+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATTGATACGAAAAGTCACTGCGCTTGTGTCACCAGCCCGCCTGCAGA
TACCTCATCCCTACTTACTGTGGCCTCTTCTCTGCCGCTAACACAAGGGC
AAATTATATCGTTACTACGACTGTATGGCAACATCTTCCTCTGCCGTCTA
CTACTGTCGTCGTGTGTGGTGTGTGGTGATGATGGGTCGGGTTGGATGAT
GTGCCCAAAATGCACGTTTGTTTGTTGCTCTTTGTATCGCAACTCCCTCG
CCGCCATATGTGGTCAAAAACTCAAGAGATTGAGGACGAAACTTAGTAGG
GAGCAGCTGCTGTTGTTGTTTCTCACATTAGCTCTCCAGTCCAAAACATT
TTTAAGGGCCCAAGGTCACAAAACGAGGCACACTCGACGCCGCGAAAAAA
AATAAATGATTGATACGAAAAGTCACTGCGCTTGTGTCACCAGCCCGCCT
GCAGATACCTCATCCCTACTTACTGTGGCCTCTTCTCTGCCGCTAACACA
AGGGCAAATTATATCGTTACTACGACTGTATGGCAACATCTTCCTCTGCC
GTCTACTACTGTCGTCGTGTGTGGTGTGTGGTGATGATGGGTCGGGTTGG
ATGATGTGCCCAAAATGCACGTTTGTTTGTTGCTCTTTGTATCGCAACTC
CCTCGCCGCCATATGTGGTCAAAAACTCAAGAGATTGAGGACGAAACTTA
GTAGGGAGCAGCTGCTGTTGTTGTTTCTCACATTAGCTCTCCAGTCCAAA
ACATTTTTAAGGGCCCAAGGTCACAAAACGAGGCACACTCGACGCCGCGA
AAAAAAATAA
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