mRNA_L-elsbetiae_contig10489.479.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10489.479.1
Unique NamemRNA_L-elsbetiae_contig10489.479.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10489.479.1 vs. uniprot
Match: A0A6H5KRX9_9PHAE (tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRX9_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 9.050e-21
Identity = 45/51 (88.24%), Postives = 49/51 (96.08%), Query Frame = 1
Query:   46 QDALDRANEVMGSSLTQRDVKIHVVRDVAPNKPMLCLSFLAPDAGANRDTE 198
            QDALDRANEVMGS+LTQ++VKIHVVRDVAPNKPMLCLSFLAPDAGA+  TE
Sbjct:  377 QDALDRANEVMGSNLTQQEVKIHVVRDVAPNKPMLCLSFLAPDAGADGKTE 427          
BLAST of mRNA_L-elsbetiae_contig10489.479.1 vs. uniprot
Match: D7FYA4_ECTSI (tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYA4_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 9.730e-21
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 1
Query:   46 QDALDRANEVMGSSLTQRDVKIHVVRDVAPNKPMLCLSFLAPDAGANRDTE 198
            QDALDRANE MGSSLTQR+VKIHVVRDVAPNKPMLCLSFLAPDAGA+   E
Sbjct:  304 QDALDRANEAMGSSLTQREVKIHVVRDVAPNKPMLCLSFLAPDAGADGKAE 354          
BLAST of mRNA_L-elsbetiae_contig10489.479.1 vs. uniprot
Match: A0A835Z8A4_9STRA (tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8A4_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.500e-8
Identity = 31/64 (48.44%), Postives = 39/64 (60.94%), Query Frame = 1
Query:    1 RPSTLKLCFFFFK---SFQDALDRANEVMGSSLTQRDVKIHVVRDVAPNKPMLCLSFLAPDAGA 183
            R   L  C+ F +   +  DA+ RA   +G+ L   DVK+HVVRDVAP KPMLCL+F AP   A
Sbjct:  354 RDPPLVHCYCFSRGDDAVGDAIARAAAALGAPLAAADVKVHVVRDVAPKKPMLCLTFRAPACAA 417          
BLAST of mRNA_L-elsbetiae_contig10489.479.1 vs. uniprot
Match: A0A150G7T0_GONPE (tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G7T0_GONPE)

HSP 1 Score: 52.8 bits (125), Expect = 2.280e-7
Identity = 29/69 (42.03%), Postives = 37/69 (53.62%), Query Frame = 1
Query:    1 RPSTLKLCFFFFKSFQ---DALDRANEVMGSSLTQRDVKIHVVRDVAPNKPMLCLSFLAPDAGANRDTE 198
            RP  +  C+ F ++ +   D L +A   +G  L    V +H VRDVAPNK MLCLSF  P   A R  E
Sbjct:   26 RPLPMVHCYTFKRAAETEADILAKAERYLGGPLEPESVSVHTVRDVAPNKLMLCLSFRVPRVVAFRGRE 94          
BLAST of mRNA_L-elsbetiae_contig10489.479.1 vs. uniprot
Match: A0A150G7S3_GONPE (tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G7S3_GONPE)

HSP 1 Score: 52.8 bits (125), Expect = 2.070e-6
Identity = 29/69 (42.03%), Postives = 37/69 (53.62%), Query Frame = 1
Query:    1 RPSTLKLCFFFFKSFQ---DALDRANEVMGSSLTQRDVKIHVVRDVAPNKPMLCLSFLAPDAGANRDTE 198
            RP  +  C+ F ++ +   D L +A   +G  L    V +H VRDVAPNK MLCLSF  P   A R  E
Sbjct:  230 RPLPMVHCYTFKRAAETEADILAKAERYLGGPLEPESVSVHTVRDVAPNKLMLCLSFRVPRVVAFRGRE 298          
BLAST of mRNA_L-elsbetiae_contig10489.479.1 vs. uniprot
Match: A0A7S2RAB3_9STRA (tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RAB3_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 4.190e-6
Identity = 22/42 (52.38%), Postives = 30/42 (71.43%), Query Frame = 1
Query:   46 QDALDRANEVMGSSLTQRDVKIHVVRDVAPNKPMLCLSFLAP 171
            + A+ RA E +G  L + +V+ H+VRDVAP KPM+CLSF  P
Sbjct:  413 RSAIKRAEEALGGPLKREEVQAHMVRDVAPKKPMICLSFRLP 454          
BLAST of mRNA_L-elsbetiae_contig10489.479.1 vs. uniprot
Match: A0A7S3TCP1_9SPIT (tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TCP1_9SPIT)

HSP 1 Score: 50.4 bits (119), Expect = 6.550e-6
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 1
Query:   22 CFFFFKSFQ---DALDRANEVMGSSLTQRDVKIHVVRDVAPNKPMLCLSFLAPDAGANRDTE 198
            C+ F K+     D + RA E++G  L   D + H+VRDVAP+K MLC+SF+ P A A +D +
Sbjct:   93 CYCFSKAADARADVIARAEEMLGCKLP--DAEAHIVRDVAPSKLMLCVSFVLPSAIAWKDVD 152          
BLAST of mRNA_L-elsbetiae_contig10489.479.1 vs. uniprot
Match: A0A836BTS6_9CHLO (tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BTS6_9CHLO)

HSP 1 Score: 50.1 bits (118), Expect = 2.010e-5
Identity = 26/62 (41.94%), Postives = 36/62 (58.06%), Query Frame = 1
Query:    1 RPSTLKLCFFFFKSFQ---DALDRANEVMGSSLTQRDVKIHVVRDVAPNKPMLCLSF-LAPD 174
            RP  L  C+ F +  +   D L +A   +G  + +  + +H VRDVAPNK MLCLSF L P+
Sbjct:  444 RPLPLVHCYTFKRGVETEEDVLSKAESFLGGPMDRAQLSVHTVRDVAPNKLMLCLSFRLTPE 505          
BLAST of mRNA_L-elsbetiae_contig10489.479.1 vs. uniprot
Match: A0A8J9RSB4_9CHLO (tRNA (Guanine(37)-N1)-methyltransferase n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RSB4_9CHLO)

HSP 1 Score: 48.9 bits (115), Expect = 5.120e-5
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 1
Query:   22 CFFFFKSFQDALD---RANEVMGSSLTQRDVKIHVVRDVAPNKPMLCLSFLAPDAGA 183
            C+ F K+ +   D   RA   +G +L+ R  +IH+VRDVAPNK M CLSF  P+A A
Sbjct:  365 CYTFAKAAETDADIESRAETALGGALS-RGCRIHLVRDVAPNKRMFCLSFQLPEAVA 420          
BLAST of mRNA_L-elsbetiae_contig10489.479.1 vs. uniprot
Match: A0A8J6C3T7_DIALT (tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C3T7_DIALT)

HSP 1 Score: 48.5 bits (114), Expect = 7.020e-5
Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 1
Query:   22 CFFFFKS-----FQDALDRANEVMGSSLTQRDVKIHVVRDVAPNKPMLCLSFLAPD 174
            C+ F K+       DA  RA  V+G SL  R  ++HVVRDVAP+K MLC++F+ PD
Sbjct:  373 CYCFSKAKDGAAIDDARARAAAVLGVSLDGRS-EVHVVRDVAPSKLMLCVTFVVPD 427          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10489.479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5KRX9_9PHAE9.050e-2188.24tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Ec... [more]
D7FYA4_ECTSI9.730e-2188.24tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarbox... [more]
A0A835Z8A4_9STRA1.500e-848.44tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Tr... [more]
A0A150G7T0_GONPE2.280e-742.03tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarbox... [more]
A0A150G7S3_GONPE2.070e-642.03tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Go... [more]
A0A7S2RAB3_9STRA4.190e-652.38tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Rh... [more]
A0A7S3TCP1_9SPIT6.550e-643.55tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarbox... [more]
A0A836BTS6_9CHLO2.010e-541.94tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Ed... [more]
A0A8J9RSB4_9CHLO5.120e-547.37tRNA (Guanine(37)-N1)-methyltransferase n=1 Tax=Co... [more]
A0A8J6C3T7_DIALT7.020e-548.21tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Di... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10489contigL-elsbetiae_contig10489:6158..6355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue4.9e-17
Seed eggNOG ortholog2880.D7FYA4
Preferred nameTRM5
KEGG rclassRC00003,RC00334
KEGG koko:K15429
KEGG ReactionR00597
Hectar predicted targeting categoryother localisation
GOsGO:0000959,GO:0000963,GO:0001510,GO:0002939,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030431,GO:0030488,GO:0031974,GO:0032259,GO:0032501,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0052906,GO:0070013,GO:0070525,GO:0070900,GO:0070901,GO:0071704,GO:0090304,GO:0090646,GO:0140053,GO:0140098,GO:0140101,GO:1900864,GO:1901360
EggNOG free text desc.tRNA (guanine(37)-N(1))-methyltransferase activity
EggNOG OGsCOG2520@1,KOG2078@2759
EC2.1.1.228
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815272.6018374-CDS-L-elsbetiae_contig10489:6157..63551622815272.6018374-CDS-L-elsbetiae_contig10489:6157..6355Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10489 6158..6355 -
1691682809.4713254-CDS-L-elsbetiae_contig10489:6157..63551691682809.4713254-CDS-L-elsbetiae_contig10489:6157..6355Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10489 6158..6355 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10489.479.1prot_L-elsbetiae_contig10489.479.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10489 6158..6355 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10489.479.1

>prot_L-elsbetiae_contig10489.479.1 ID=prot_L-elsbetiae_contig10489.479.1|Name=mRNA_L-elsbetiae_contig10489.479.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=66bp
RPSTLKLCFFFFKSFQDALDRANEVMGSSLTQRDVKIHVVRDVAPNKPML
CLSFLAPDAGANRDTE
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mRNA from alignment at L-elsbetiae_contig10489:6158..6355-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10489.479.1 ID=mRNA_L-elsbetiae_contig10489.479.1|Name=mRNA_L-elsbetiae_contig10489.479.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=198bp|location=Sequence derived from alignment at L-elsbetiae_contig10489:6158..6355- (Laminarionema elsbetiae ELsaHSoW15)
CGCCCCTCCACCCTCAAATTATGTTTTTTTTTTTTTAAATCTTTTCAGGA CGCGCTGGACCGCGCGAACGAGGTGATGGGCTCCAGCCTTACCCAACGCG ACGTCAAAATCCACGTGGTGCGGGACGTTGCTCCGAACAAGCCTATGCTC TGCCTGTCCTTTCTCGCACCCGACGCCGGTGCCAACAGGGACACAGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10489:6158..6355-

>mRNA_L-elsbetiae_contig10489.479.1 ID=mRNA_L-elsbetiae_contig10489.479.1|Name=mRNA_L-elsbetiae_contig10489.479.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=396bp|location=Sequence derived from alignment at L-elsbetiae_contig10489:6158..6355- (Laminarionema elsbetiae ELsaHSoW15)
CGCCCCTCCACCCTCAAATTATGTTTTTTTTTTTTTAAATCTTTTCAGGA
CGCGCTGGACCGCGCGAACGAGGTGATGGGCTCCAGCCTTACCCAACGCG
ACGTCAAAATCCACGTGGTGCGGGACGTTGCTCCGAACAAGCCTATGCTC
TGCCTGTCCTTTCTCGCACCCGACGCCGGTGCCAACAGGGACACAGAGCG
CCCCTCCACCCTCAAATTATGTTTTTTTTTTTTTAAATCTTTTCAGGACG
CGCTGGACCGCGCGAACGAGGTGATGGGCTCCAGCCTTACCCAACGCGAC
GTCAAAATCCACGTGGTGCGGGACGTTGCTCCGAACAAGCCTATGCTCTG
CCTGTCCTTTCTCGCACCCGACGCCGGTGCCAACAGGGACACAGAG
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