mRNA_L-elsbetiae_contig10489.478.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10489.478.1
Unique NamemRNA_L-elsbetiae_contig10489.478.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10489.478.1 vs. uniprot
Match: D7FVU3_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU3_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 3.840e-25
Identity = 68/136 (50.00%), Postives = 91/136 (66.91%), Query Frame = 1
Query:  199 PKVVRLIVDAGADTSSAVRVTTPTGEVIFNGTPLDFANNCILTKQVRGGKDATEEQMHRLEAVRRFLLQVEAVHAVSWLWPRE-PLLAGGAAEDSSKTARNSTAAIGTQLTLMLPILRRR--RRGVLLVPLFRYSS 597
            P++ R +VDAGADT+SAV++         N TPL++ N+  L ++  G   AT+EQ+ RLEA RR LL+V AVHAVSW+WP + PLLA  A  +S +TA++S     TQLT +LP+LRRR  RR +L   LFRYS 
Sbjct:  276 PRITRRLVDAGADTTSAVQLRAKRSRTCVNVTPLEYVNDWAL-RETNGDHPATDEQLLRLEATRRVLLRVVAVHAVSWIWPSDAPLLARPA--NSPRTAKHSP----TQLTTVLPVLRRRAGRRALLWDTLFRYSK 404          
BLAST of mRNA_L-elsbetiae_contig10489.478.1 vs. uniprot
Match: D8LSC5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 5.690e-25
Identity = 66/145 (45.52%), Postives = 87/145 (60.00%), Query Frame = 1
Query:  199 PKVVRLIVDAGADTSSAVRVTTPTGEVIFNGTPLDFANNCILTKQVRGGKDATEEQMHRLEAVRRFLLQVEAVHAVSWLWPRE-PLLAGGAAEDSSKTARNSTAAIGTQLTLMLPILRRRRRG--VLLVPLFRYSSYP*SQGLAR 624
            P++VRL+VDAGADT+S VRVT   G V +N TPL    + +L ++V  GK ATEEQ+HRL+A+RR LL+V+AVHAVSWLWP + P +            R         L+L LPIL+RR +   V +  L R S     +G  R
Sbjct:   78 PRIVRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTS-LLREKVVDGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAPSIVHAVERSCGPEPRRPP------LSLTLPILKRRAKTCHVFVATLLRSSPISSGRGSRR 215          
BLAST of mRNA_L-elsbetiae_contig10489.478.1 vs. uniprot
Match: D7G1Y3_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y3_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 3.010e-24
Identity = 72/135 (53.33%), Postives = 86/135 (63.70%), Query Frame = 1
Query:  199 PKVVRLIVDAGADTSSAVRVTTPTGEVIFNGTPLDFANNCILTKQVRGGKDATEEQMHRLEAVRRFLLQVEAVHAVSWLWPREPLLAGGAAEDSSKTARNSTAAIGTQLTLMLPILRRR--RRGVLLVPLFRYSS 597
            P++VRL+VD+GADT SAVR T   G V F+ TPL      IL      GKD  EEQ+ RLEAVRR LL+VEAVHA SW+WP     AG  A+D+++    +     T+LT  L ILRRR  RRGVLL  L RYSS
Sbjct:  244 PRIVRLLVDSGADTESAVRYTYRDGLVGFSDTPLCRTIR-ILRDVETEGKDDKEEQLGRLEAVRRLLLRVEAVHATSWVWPSSA--AGSVAQDAAEVKAGAETE-PTRLTSTLQILRRRATRRGVLLRALSRYSS 374          
BLAST of mRNA_L-elsbetiae_contig10489.478.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 3.480e-23
Identity = 65/134 (48.51%), Postives = 82/134 (61.19%), Query Frame = 1
Query:  199 PKVVRLIVDAGADTSSAVRVTTPTGEVIFNGTPLDFANNCILTKQVRGGKDATEEQMHRLEAVRRFLLQVEAVHAVSWLWPREPLLAGGAAEDSSKTARNSTAAIGTQLTLMLPILRRR--RRGVLLVPLFRYS 594
            P++VR++VDAGADT+S V+V    G V+FN TPL F    +  K V  GK AT+E + RLEA+ R LL+V+AVHAVSWLWP      G A E   +    +       L LMLPIL+RR  RR  L+  L RYS
Sbjct:  398 PRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAPFIGRATETDPEPPLPA-------LKLMLPILKRRTKRRCGLVATLLRYS 524          
BLAST of mRNA_L-elsbetiae_contig10489.478.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.150e-21
Identity = 66/141 (46.81%), Postives = 86/141 (60.99%), Query Frame = 1
Query:  193 FLPKVVRLIVDAGADTSSAVRVTTPTGEVIFNGTPLDFANNCILTK-QVRGGKDATEEQMHRLEAVRRFLLQVEAVHAVSWLWPRE-PLLAGGAAEDSSKTARNSTAAIGTQLTLMLPILRRRRRG--VLLVPLFRYSSYP 603
            + P+VVRL+V+AGADT+S V V    G    + TPL    N +  K +V G   A+ EQ+H+LEA+RR LL+VEAVHAVSWLWP +   +   AA  + +T      AI T +TL + + RRR RG  V L  L RYSS P
Sbjct:  300 YRPRVVRLLVEAGADTTSPVAVRNQLGGDDVSITPLGLTMNPVRDKVKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDISTITRAAARGTDRTT-----AISTAVTLPMLVTRRRARGRKVPLAALLRYSSKP 435          
BLAST of mRNA_L-elsbetiae_contig10489.478.1 vs. uniprot
Match: D7FVU0_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU0_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 4.940e-21
Identity = 51/102 (50.00%), Postives = 68/102 (66.67%), Query Frame = 1
Query:  199 PKVVRLIVDAGADTSSAVRVTTPTGEVIFNGTPLDFANNCILTKQVRGGKDATEEQMHRLEAVRRFLLQVEAVHAVSWLWPREPLLAGGAAEDSSKTARNST 504
            P++VRL+++AGADT+S +R T   GEV  NGTPL    + +  K +  G+ ATEE + RLEA+RR LL+ EAVHAVSWLWP +    G AAE   + A  +T
Sbjct:  286 PRIVRLLINAGADTTSVIRGTNSEGEVQCNGTPLALTTSYLWEKILDNGEPATEEHLQRLEAIRRLLLRAEAVHAVSWLWPSDASFVGHAAEKWPRAAFATT 387          
BLAST of mRNA_L-elsbetiae_contig10489.478.1 vs. uniprot
Match: D7FVK3_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 1.120e-20
Identity = 67/142 (47.18%), Postives = 86/142 (60.56%), Query Frame = 1
Query:  151 CSVALPATRACST*FLPKVVRLIVDAGADTSSAVRVTTPTGEVIFNGTPLDFANNCILTKQVRGGKDATEEQMHRLEAVRRFLLQVEAVHAVSWLW----PREPLLAGGAAEDSSKTARNSTAAIGTQLTLMLPILRRRRRG 564
            C++ +   ++CS    PKVVRL+VDAGADT+S VR T   G +    TPL  A   +  K +   K   +E + RLE +RR LL+VEAVHA SWLW    PR  L AGG A  +++T  +ST A   QL  +LPILRRR RG
Sbjct:  292 CNIDVGLNQSCS----PKVVRLLVDAGADTTSIVRFTIQPGTLPVVCTPLSLATEALRIK-IAYRKAIPDELLRRLELIRRLLLRVEAVHATSWLWQNGVPRVGLPAGGTA--ATETESSSTTA--PQLRTVLPILRRRARG 424          
BLAST of mRNA_L-elsbetiae_contig10489.478.1 vs. uniprot
Match: D7G1H7_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1H7_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 3.760e-20
Identity = 71/154 (46.10%), Postives = 92/154 (59.74%), Query Frame = 1
Query:  151 CSVALPATRACST*FLPKVVRLIVDAGADTSSAVRVT--TPTGEVIFNGTPLDFANNCILTKQVRGGKDATEEQMHRLEAVRRFLLQVEAVHAVSWLWP--REPLLAGGAAEDSSKTARNSTAAIGTQLTLMLPILRRR--RRGVLLVPLFRYS 594
            C+V + A R CS    PK+VRL+VDAGA+T+ AV VT  TP  E     TPL F    +   +V  G+ AT+EQ+ RL+  R  L + EAVHAVSWLW     P +A  A +  ++TA   + A+ T L  M P+LRR+   RGVLL  LFRYS
Sbjct:  289 CAVDVGAGRLCS----PKIVRLLVDAGANTTRAVGVTRITPRWEKTSE-TPLAFTTRLLREGRV-DGEAATKEQLQRLKDTRCLLSRAEAVHAVSWLWASGEPPRIAQAAGDTKTETA---STAVATPLRAMSPMLRRKPGTRGVLLKTLFRYS 433          
BLAST of mRNA_L-elsbetiae_contig10489.478.1 vs. uniprot
Match: A0A6H5KSA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA9_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.360e-19
Identity = 59/139 (42.45%), Postives = 81/139 (58.27%), Query Frame = 1
Query:  199 PKVVRLIVDAGADTSSAVRVTTPTGEVIFNGTPLDFANNCILTKQVRGGKDATEEQMHRLEAVRRFLLQVEAVHAVSWLWPREPLLAGGAAEDSSKTARNSTAAIGTQLTLMLPILRRRR-RGVLLVPLFRYSSYP*SQ 612
            P+V+RL +DAGADT+S VR+T   G  +F GTPL +    +  +Q RG  D+T+ +   LEAVRR LLQ+EA+ AVSW W  + L +   A    +    S   + T L L LP  R+ R R VL++ + RYS  P S 
Sbjct:  465 PRVLRLFLDAGADTASTVRITNKEGVQLFRGTPLAYTTWLLRDQQARG-IDSTKGEPCSLEAVRRMLLQLEAIRAVSWCWQSDALSSIERAVQDGRPRAKSRLTVDTPLGLTLPRRRKARARRVLVMAMSRYSRKPMSS 602          
BLAST of mRNA_L-elsbetiae_contig10489.478.1 vs. uniprot
Match: D8LJF9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF9_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 1.660e-19
Identity = 59/137 (43.07%), Postives = 83/137 (60.58%), Query Frame = 1
Query:  199 PKVVRLIVDAGADTSSAVRVTTPTGEVIFNGTPLDFANNCILTKQVRGGKDATEEQMHRLEAVRRFLLQVEAVHAVSWLWPREPLLAGGAAEDSSKTARNSTAAIGTQLTLMLPILRRRRR--GVLLVPLFRYSSYP 603
            P+V RL+V+AGADT++ +R T   G V+F+ TPL    + +  K+V  G   +++++ RLE +RR LLQVEAVHA SWLWP      GG   D++     +T A   +L  +LPILRRR R  GV+   L R+   P
Sbjct:  290 PRVARLLVEAGADTTTELRRTNSMGVVLFSCTPLKLTVHILQDKKV-DGTYISKQRLWRLEGIRRLLLQVEAVHAESWLWPSSSG-DGGRRPDNAAEVTTATNAAAPKLGRVLPILRRRARRPGVVWTALCRHQRKP 424          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10489.478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVU3_ECTSI3.840e-2550.00EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LSC5_ECTSI5.690e-2545.52EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G1Y3_ECTSI3.010e-2453.33EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1... [more]
D7FT11_ECTSI3.480e-2348.51EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KJA9_9PHAE1.150e-2146.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVU0_ECTSI4.940e-2150.00EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FVK3_ECTSI1.120e-2047.18EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G1H7_ECTSI3.760e-2046.10EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1... [more]
A0A6H5KSA9_9PHAE1.360e-1942.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJF9_ECTSI1.660e-1943.07EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10489contigL-elsbetiae_contig10489:1627..2895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue7e-10
Seed eggNOG ortholog2880.D7FVU3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size816
Cds size240
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10489.478.1prot_L-elsbetiae_contig10489.478.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10489 1993..2685 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815272.5104225-UTR-L-elsbetiae_contig10489:1626..19921622815272.5104225-UTR-L-elsbetiae_contig10489:1626..1992Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10489 1627..1992 +
1691682809.4346972-UTR-L-elsbetiae_contig10489:1626..19921691682809.4346972-UTR-L-elsbetiae_contig10489:1626..1992Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10489 1627..1992 +
1622815272.5414329-UTR-L-elsbetiae_contig10489:2685..28951622815272.5414329-UTR-L-elsbetiae_contig10489:2685..2895Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10489 2686..2895 +
1691682809.4618013-UTR-L-elsbetiae_contig10489:2685..28951691682809.4618013-UTR-L-elsbetiae_contig10489:2685..2895Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10489 2686..2895 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815272.5206702-CDS-L-elsbetiae_contig10489:1992..22131622815272.5206702-CDS-L-elsbetiae_contig10489:1992..2213Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10489 1993..2213 +
1691682809.4453838-CDS-L-elsbetiae_contig10489:1992..22131691682809.4453838-CDS-L-elsbetiae_contig10489:1992..2213Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10489 1993..2213 +
1622815272.5313427-CDS-L-elsbetiae_contig10489:2666..26851622815272.5313427-CDS-L-elsbetiae_contig10489:2666..2685Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10489 2667..2685 +
1691682809.4533184-CDS-L-elsbetiae_contig10489:2666..26851691682809.4533184-CDS-L-elsbetiae_contig10489:2666..2685Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10489 2667..2685 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10489.478.1

>prot_L-elsbetiae_contig10489.478.1 ID=prot_L-elsbetiae_contig10489.478.1|Name=mRNA_L-elsbetiae_contig10489.478.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=80bp
MHRLEAVRRFLLQVEAVHAVSWLWPREPLLAGGAAEDSSKTARNSTAAIG
TQLTLMLPILRRRRRGVLLVPLFRYSSYP*
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mRNA from alignment at L-elsbetiae_contig10489:1627..2895+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10489.478.1 ID=mRNA_L-elsbetiae_contig10489.478.1|Name=mRNA_L-elsbetiae_contig10489.478.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1269bp|location=Sequence derived from alignment at L-elsbetiae_contig10489:1627..2895+ (Laminarionema elsbetiae ELsaHSoW15)
TCGATTCGGGATTAGCCCTGTTCAACGCCACGGGGCGTGGCTGGGTGGCG GCTGTGAAGCTCCTGTTGCAGCAGCGACAACGGCGGGGGGGCACCTCCCA TGGCGGACTTGGATACGTCAACTGCTGCGATGATGTCGGCGTGACGCCCT TGTTCCGTAGCATTGCCGGCGACGAGGGCTTGCTCCACCTGATTTCTCCC AAAGGTGGTGCGTTTGATCGTCGACGCCGGAGCCGACACGTCGTCGGCGG TTCGAGTCACCACCCCGACGGGTGAGGTCATATTCAACGGCACACCGCTG GATTTCGCCAACAACTGCATCCTCACAAAGCAAGTGAGAGGGGGGAAAGA CGCGACAGAGGAGCAGATGCATAGGCTGGAGGCCGTCCGCCGCTTTTTGC TACAGGTAGAAGCGGTGCATGCCGTCTCTTGGCTGTGGCCCCGGGAGCCC CTCCTGGCCGGCGGTGCTGCAGAAGATTCAAGCAAGACCGCCAGAAACAG CACTGCAGCGATTGGCACGCAGTTGACGTTGATGCTGCCGATCTTGAGGC GGAGAAGGCGTGGTGTGCTTTTGGTGCCCCTGTTCAGGTGGGACGAGATG CGTATTAAGTTGAGGTAGTGAGAAGCGTTGTGGGGGGAAACGCCGTTCTT CAAATTCAAAGTACGATGATGTTATATAGATACTCGACGTCCTTGAATGT TGGTTTTGCGAAAGCAATTGTCTGCTACTGCCAGTTCTACCGCCGTGGCG CTGTGTCGCTCTTTTTCTGGTTTGAGTGTTCATGCTGTGCCTCGAGGATG GAACACCGCTAAATATACATACATATGTGCGTGCAATCTTGTCCGCTCGG CGCCACGTTTGGATAGGGTTTGTTTTTGGGCTTTGTGTCGATCACATGGC ATGCCGTCAATAAATAGTAGGCAAAAGGACTAGCAGCTTTATCCCCGTCT TGGAGCTCTTTACGATCGGTTTGCACTGATGTTTTATGGTTCTTGGTGTT TGCTTCCACCGCCTTGCTGCTCGCCCGCTTACTTGTTCAGGTATTCGAGC TATCCTTAATCGCAGGGGCTGGCGCGGTGTGTCAACTGGCCCCTTTTTCT GCCGACTGATTGAGCGGCGTTTGGGACGCGCTAGATCTCTGGCAGTTTGA CCAAGGAGCGGAAGCCGTGCCAGCGCCACTGGGTTTCATAGGAGAAGGTG GCTTTGGTGTGTCGACGACACAATTTTGCCGTGGCTCCAGACGTAGAATA TGTACAATGCCGTCACCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10489:1627..2895+

>mRNA_L-elsbetiae_contig10489.478.1 ID=mRNA_L-elsbetiae_contig10489.478.1|Name=mRNA_L-elsbetiae_contig10489.478.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=480bp|location=Sequence derived from alignment at L-elsbetiae_contig10489:1627..2895+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCATAGGCTGGAGGCCGTCCGCCGCTTTTTGCTACAGGTAGAAGCGGT
GCATGCCGTCTCTTGGCTGTGGCCCCGGGAGCCCCTCCTGGCCGGCGGTG
CTGCAGAAGATTCAAGCAAGACCGCCAGAAACAGCACTGCAGCGATTGGC
ACGCAGTTGACGTTGATGCTGCCGATCTTGAGGCGGAGAAGGCGTGGTGT
GCTTTTGGTGCCCCTGTTCAGATGCATAGGCTGGAGGCCGTCCGCCGCTT
TTTGCTACAGGTAGAAGCGGTGCATGCCGTCTCTTGGCTGTGGCCCCGGG
AGCCCCTCCTGGCCGGCGGTGCTGCAGAAGATTCAAGCAAGACCGCCAGA
AACAGCACTGCAGCGATTGGCACGCAGTTGACGTTGATGCTGCCGATCTT
GAGGCGGAGAAGGCGTGGTGTGCTTTTGGTGCCCCTGTTCAGGTATTCGA
GCTATCCTTAAGTATTCGAGCTATCCTTAA
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