mRNA_L-elsbetiae_contig10489.478.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig10489.478.1 vs. uniprot
Match: D7FVU3_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU3_ECTSI) HSP 1 Score: 112 bits (281), Expect = 3.840e-25 Identity = 68/136 (50.00%), Postives = 91/136 (66.91%), Query Frame = 1 Query: 199 PKVVRLIVDAGADTSSAVRVTTPTGEVIFNGTPLDFANNCILTKQVRGGKDATEEQMHRLEAVRRFLLQVEAVHAVSWLWPRE-PLLAGGAAEDSSKTARNSTAAIGTQLTLMLPILRRR--RRGVLLVPLFRYSS 597 P++ R +VDAGADT+SAV++ N TPL++ N+ L ++ G AT+EQ+ RLEA RR LL+V AVHAVSW+WP + PLLA A +S +TA++S TQLT +LP+LRRR RR +L LFRYS Sbjct: 276 PRITRRLVDAGADTTSAVQLRAKRSRTCVNVTPLEYVNDWAL-RETNGDHPATDEQLLRLEATRRVLLRVVAVHAVSWIWPSDAPLLARPA--NSPRTAKHSP----TQLTTVLPVLRRRAGRRALLWDTLFRYSK 404
BLAST of mRNA_L-elsbetiae_contig10489.478.1 vs. uniprot
Match: D8LSC5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI) HSP 1 Score: 108 bits (271), Expect = 5.690e-25 Identity = 66/145 (45.52%), Postives = 87/145 (60.00%), Query Frame = 1 Query: 199 PKVVRLIVDAGADTSSAVRVTTPTGEVIFNGTPLDFANNCILTKQVRGGKDATEEQMHRLEAVRRFLLQVEAVHAVSWLWPRE-PLLAGGAAEDSSKTARNSTAAIGTQLTLMLPILRRRRRG--VLLVPLFRYSSYP*SQGLAR 624 P++VRL+VDAGADT+S VRVT G V +N TPL + +L ++V GK ATEEQ+HRL+A+RR LL+V+AVHAVSWLWP + P + R L+L LPIL+RR + V + L R S +G R Sbjct: 78 PRIVRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTS-LLREKVVDGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAPSIVHAVERSCGPEPRRPP------LSLTLPILKRRAKTCHVFVATLLRSSPISSGRGSRR 215
BLAST of mRNA_L-elsbetiae_contig10489.478.1 vs. uniprot
Match: D7G1Y3_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y3_ECTSI) HSP 1 Score: 110 bits (274), Expect = 3.010e-24 Identity = 72/135 (53.33%), Postives = 86/135 (63.70%), Query Frame = 1 Query: 199 PKVVRLIVDAGADTSSAVRVTTPTGEVIFNGTPLDFANNCILTKQVRGGKDATEEQMHRLEAVRRFLLQVEAVHAVSWLWPREPLLAGGAAEDSSKTARNSTAAIGTQLTLMLPILRRR--RRGVLLVPLFRYSS 597 P++VRL+VD+GADT SAVR T G V F+ TPL IL GKD EEQ+ RLEAVRR LL+VEAVHA SW+WP AG A+D+++ + T+LT L ILRRR RRGVLL L RYSS Sbjct: 244 PRIVRLLVDSGADTESAVRYTYRDGLVGFSDTPLCRTIR-ILRDVETEGKDDKEEQLGRLEAVRRLLLRVEAVHATSWVWPSSA--AGSVAQDAAEVKAGAETE-PTRLTSTLQILRRRATRRGVLLRALSRYSS 374
BLAST of mRNA_L-elsbetiae_contig10489.478.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI) HSP 1 Score: 108 bits (270), Expect = 3.480e-23 Identity = 65/134 (48.51%), Postives = 82/134 (61.19%), Query Frame = 1 Query: 199 PKVVRLIVDAGADTSSAVRVTTPTGEVIFNGTPLDFANNCILTKQVRGGKDATEEQMHRLEAVRRFLLQVEAVHAVSWLWPREPLLAGGAAEDSSKTARNSTAAIGTQLTLMLPILRRR--RRGVLLVPLFRYS 594 P++VR++VDAGADT+S V+V G V+FN TPL F + K V GK AT+E + RLEA+ R LL+V+AVHAVSWLWP G A E + + L LMLPIL+RR RR L+ L RYS Sbjct: 398 PRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAPFIGRATETDPEPPLPA-------LKLMLPILKRRTKRRCGLVATLLRYS 524
BLAST of mRNA_L-elsbetiae_contig10489.478.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE) HSP 1 Score: 103 bits (257), Expect = 1.150e-21 Identity = 66/141 (46.81%), Postives = 86/141 (60.99%), Query Frame = 1 Query: 193 FLPKVVRLIVDAGADTSSAVRVTTPTGEVIFNGTPLDFANNCILTK-QVRGGKDATEEQMHRLEAVRRFLLQVEAVHAVSWLWPRE-PLLAGGAAEDSSKTARNSTAAIGTQLTLMLPILRRRRRG--VLLVPLFRYSSYP 603 + P+VVRL+V+AGADT+S V V G + TPL N + K +V G A+ EQ+H+LEA+RR LL+VEAVHAVSWLWP + + AA + +T AI T +TL + + RRR RG V L L RYSS P Sbjct: 300 YRPRVVRLLVEAGADTTSPVAVRNQLGGDDVSITPLGLTMNPVRDKVKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDISTITRAAARGTDRTT-----AISTAVTLPMLVTRRRARGRKVPLAALLRYSSKP 435
BLAST of mRNA_L-elsbetiae_contig10489.478.1 vs. uniprot
Match: D7FVU0_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU0_ECTSI) HSP 1 Score: 101 bits (251), Expect = 4.940e-21 Identity = 51/102 (50.00%), Postives = 68/102 (66.67%), Query Frame = 1 Query: 199 PKVVRLIVDAGADTSSAVRVTTPTGEVIFNGTPLDFANNCILTKQVRGGKDATEEQMHRLEAVRRFLLQVEAVHAVSWLWPREPLLAGGAAEDSSKTARNST 504 P++VRL+++AGADT+S +R T GEV NGTPL + + K + G+ ATEE + RLEA+RR LL+ EAVHAVSWLWP + G AAE + A +T Sbjct: 286 PRIVRLLINAGADTTSVIRGTNSEGEVQCNGTPLALTTSYLWEKILDNGEPATEEHLQRLEAIRRLLLRAEAVHAVSWLWPSDASFVGHAAEKWPRAAFATT 387
BLAST of mRNA_L-elsbetiae_contig10489.478.1 vs. uniprot
Match: D7FVK3_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI) HSP 1 Score: 100 bits (250), Expect = 1.120e-20 Identity = 67/142 (47.18%), Postives = 86/142 (60.56%), Query Frame = 1 Query: 151 CSVALPATRACST*FLPKVVRLIVDAGADTSSAVRVTTPTGEVIFNGTPLDFANNCILTKQVRGGKDATEEQMHRLEAVRRFLLQVEAVHAVSWLW----PREPLLAGGAAEDSSKTARNSTAAIGTQLTLMLPILRRRRRG 564 C++ + ++CS PKVVRL+VDAGADT+S VR T G + TPL A + K + K +E + RLE +RR LL+VEAVHA SWLW PR L AGG A +++T +ST A QL +LPILRRR RG Sbjct: 292 CNIDVGLNQSCS----PKVVRLLVDAGADTTSIVRFTIQPGTLPVVCTPLSLATEALRIK-IAYRKAIPDELLRRLELIRRLLLRVEAVHATSWLWQNGVPRVGLPAGGTA--ATETESSSTTA--PQLRTVLPILRRRARG 424
BLAST of mRNA_L-elsbetiae_contig10489.478.1 vs. uniprot
Match: D7G1H7_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1H7_ECTSI) HSP 1 Score: 99.4 bits (246), Expect = 3.760e-20 Identity = 71/154 (46.10%), Postives = 92/154 (59.74%), Query Frame = 1 Query: 151 CSVALPATRACST*FLPKVVRLIVDAGADTSSAVRVT--TPTGEVIFNGTPLDFANNCILTKQVRGGKDATEEQMHRLEAVRRFLLQVEAVHAVSWLWP--REPLLAGGAAEDSSKTARNSTAAIGTQLTLMLPILRRR--RRGVLLVPLFRYS 594 C+V + A R CS PK+VRL+VDAGA+T+ AV VT TP E TPL F + +V G+ AT+EQ+ RL+ R L + EAVHAVSWLW P +A A + ++TA + A+ T L M P+LRR+ RGVLL LFRYS Sbjct: 289 CAVDVGAGRLCS----PKIVRLLVDAGANTTRAVGVTRITPRWEKTSE-TPLAFTTRLLREGRV-DGEAATKEQLQRLKDTRCLLSRAEAVHAVSWLWASGEPPRIAQAAGDTKTETA---STAVATPLRAMSPMLRRKPGTRGVLLKTLFRYS 433
BLAST of mRNA_L-elsbetiae_contig10489.478.1 vs. uniprot
Match: A0A6H5KSA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA9_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 1.360e-19 Identity = 59/139 (42.45%), Postives = 81/139 (58.27%), Query Frame = 1 Query: 199 PKVVRLIVDAGADTSSAVRVTTPTGEVIFNGTPLDFANNCILTKQVRGGKDATEEQMHRLEAVRRFLLQVEAVHAVSWLWPREPLLAGGAAEDSSKTARNSTAAIGTQLTLMLPILRRRR-RGVLLVPLFRYSSYP*SQ 612 P+V+RL +DAGADT+S VR+T G +F GTPL + + +Q RG D+T+ + LEAVRR LLQ+EA+ AVSW W + L + A + S + T L L LP R+ R R VL++ + RYS P S Sbjct: 465 PRVLRLFLDAGADTASTVRITNKEGVQLFRGTPLAYTTWLLRDQQARG-IDSTKGEPCSLEAVRRMLLQLEAIRAVSWCWQSDALSSIERAVQDGRPRAKSRLTVDTPLGLTLPRRRKARARRVLVMAMSRYSRKPMSS 602
BLAST of mRNA_L-elsbetiae_contig10489.478.1 vs. uniprot
Match: D8LJF9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF9_ECTSI) HSP 1 Score: 97.4 bits (241), Expect = 1.660e-19 Identity = 59/137 (43.07%), Postives = 83/137 (60.58%), Query Frame = 1 Query: 199 PKVVRLIVDAGADTSSAVRVTTPTGEVIFNGTPLDFANNCILTKQVRGGKDATEEQMHRLEAVRRFLLQVEAVHAVSWLWPREPLLAGGAAEDSSKTARNSTAAIGTQLTLMLPILRRRRR--GVLLVPLFRYSSYP 603 P+V RL+V+AGADT++ +R T G V+F+ TPL + + K+V G +++++ RLE +RR LLQVEAVHA SWLWP GG D++ +T A +L +LPILRRR R GV+ L R+ P Sbjct: 290 PRVARLLVEAGADTTTELRRTNSMGVVLFSCTPLKLTVHILQDKKV-DGTYISKQRLWRLEGIRRLLLQVEAVHAESWLWPSSSG-DGGRRPDNAAEVTTATNAAAPKLGRVLPILRRRARRPGVVWTALCRHQRKP 424 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10489.478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10489.478.1 >prot_L-elsbetiae_contig10489.478.1 ID=prot_L-elsbetiae_contig10489.478.1|Name=mRNA_L-elsbetiae_contig10489.478.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=80bp MHRLEAVRRFLLQVEAVHAVSWLWPREPLLAGGAAEDSSKTARNSTAAIGback to top mRNA from alignment at L-elsbetiae_contig10489:1627..2895+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig10489.478.1 ID=mRNA_L-elsbetiae_contig10489.478.1|Name=mRNA_L-elsbetiae_contig10489.478.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1269bp|location=Sequence derived from alignment at L-elsbetiae_contig10489:1627..2895+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig10489:1627..2895+ >mRNA_L-elsbetiae_contig10489.478.1 ID=mRNA_L-elsbetiae_contig10489.478.1|Name=mRNA_L-elsbetiae_contig10489.478.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=480bp|location=Sequence derived from alignment at L-elsbetiae_contig10489:1627..2895+ (Laminarionema elsbetiae ELsaHSoW15)back to top |