mRNA_L-elsbetiae_contig10489.477.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10489.477.1
Unique NamemRNA_L-elsbetiae_contig10489.477.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10489.477.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 4.970e-7
Identity = 49/115 (42.61%), Postives = 56/115 (48.70%), Query Frame = 1 
Query:   13 LVKAGADVDAK-DSDGSTPLHAAAHVGHSEVVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNANPLLTM-SISERFSLVPLDVAASHGHSKVVRELIQKVGIEGC 351
            L KAGAD+DA    +GS PLH A H         XXXXXX                               NANPLL   S     + VPLD+AA HGH+ VVRELIQ++GIEGC
Sbjct:  192 LAKAGADLDAIIPGEGSAPLHRATHHEXXXXXXXXXXXXXNPDCQLPDGSTALHIAAEEGQVAVMRELLRGNANPLLIQTSPPGNTTTVPLDLAAKHGHTDVVRELIQELGIEGC 306
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10489.477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT11_ECTSI4.970e-742.61EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10489contigL-elsbetiae_contig10489:1185..1541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue1.1e-08
Seed eggNOG ortholog2880.D8LNF8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size357
Cds size357
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815272.469226-CDS-L-elsbetiae_contig10489:1184..15411622815272.469226-CDS-L-elsbetiae_contig10489:1184..1541Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10489 1185..1541 +
1691682809.4230466-CDS-L-elsbetiae_contig10489:1184..15411691682809.4230466-CDS-L-elsbetiae_contig10489:1184..1541Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10489 1185..1541 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10489.477.1prot_L-elsbetiae_contig10489.477.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10489 1185..1541 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10489.477.1

>prot_L-elsbetiae_contig10489.477.1 ID=prot_L-elsbetiae_contig10489.477.1|Name=mRNA_L-elsbetiae_contig10489.477.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
MTADLVKAGADVDAKDSDGSTPLHAAAHVGHSEVVAALIEAGADVDSRGK
ARATPMHKAASGGRLDAVKQLLRANANPLLTMSISERFSLVPLDVAASHG
HSKVVRELIQKVGIEGCAG
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mRNA from alignment at L-elsbetiae_contig10489:1185..1541+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10489.477.1 ID=mRNA_L-elsbetiae_contig10489.477.1|Name=mRNA_L-elsbetiae_contig10489.477.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=357bp|location=Sequence derived from alignment at L-elsbetiae_contig10489:1185..1541+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACCGCCGACCTGGTGAAGGCCGGCGCAGACGTGGACGCAAAGGACTC
CGACGGCTCCACCCCGCTTCATGCGGCTGCGCACGTTGGGCACTCAGAGG
TGGTGGCAGCACTGATCGAGGCCGGTGCGGATGTAGACAGCCGTGGGAAG
GCGAGGGCTACACCGATGCACAAGGCGGCTTCAGGTGGACGTTTGGACGC
TGTCAAACAGCTCCTTCGGGCGAACGCGAACCCGCTGTTGACCATGTCGA
TATCTGAGCGGTTCAGTCTCGTTCCGCTGGACGTCGCCGCAAGCCATGGT
CACTCGAAGGTGGTACGCGAGCTAATCCAGAAGGTCGGGATCGAAGGTTG
TGCCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10489:1185..1541+

>mRNA_L-elsbetiae_contig10489.477.1 ID=mRNA_L-elsbetiae_contig10489.477.1|Name=mRNA_L-elsbetiae_contig10489.477.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig10489:1185..1541+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACCGCCGACCTGGTGAAGGCCGGCGCAGACGTGGACGCAAAGGACTC
CGACGGCTCCACCCCGCTTCATGCGGCTGCGCACGTTGGGCACTCAGAGG
TGGTGGCAGCACTGATCGAGGCCGGTGCGGATGTAGACAGCCGTGGGAAG
GCGAGGGCTACACCGATGCACAAGGCGGCTTCAGGTGGACGTTTGGACGC
TGTCAAACAGCTCCTTCGGGCGAACGCGAACCCGCTGTTGACCATGTCGA
TATCTGAGCGGTTCAGTCTCGTTCCGCTGGACGTCGCCGCAAGCCATGGT
CACTCGAAGGTGGTACGCGAGCTAATCCAGAAGGTCGGGATCGAAGGTTG
TGCCGGGATGACCGCCGACCTGGTGAAGGCCGGCGCAGACGTGGACGCAA
AGGACTCCGACGGCTCCACCCCGCTTCATGCGGCTGCGCACGTTGGGCAC
TCAGAGGTGGTGGCAGCACTGATCGAGGCCGGTGCGGATGTAGACAGCCG
TGGGAAGGCGAGGGCTACACCGATGCACAAGGCGGCTTCAGGTGGACGTT
TGGACGCTGTCAAACAGCTCCTTCGGGCGAACGCGAACCCGCTGTTGACC
ATGTCGATATCTGAGCGGTTCAGTCTCGTTCCGCTGGACGTCGCCGCAAG
CCATGGTCACTCGAAGGTGGTACGCGAGCTAATCCAGAAGGTCGGGATCG
AAGGTTGTGCCGGG
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