mRNA_L-elsbetiae_contig10488.476.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10488.476.1
Unique NamemRNA_L-elsbetiae_contig10488.476.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10488.476.1 vs. uniprot
Match: D8LSL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSL7_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 1.920e-25
Identity = 52/75 (69.33%), Postives = 57/75 (76.00%), Query Frame = 1 
Query:    1 MVRLVEGQIFSDDEGGGSAGGSLARLLRSGTINLLGFRVPLYWTCVIAVFASLRFGVPGLLFVGVLAGASHYGCN 225
            MVRLVEGQI ++DE G  AGG L  LLR  TIN LGFRVPLYW+CVI VFA L+FG+ GLLFV   AGAS Y CN
Sbjct:    1 MVRLVEGQIVAEDEDG--AGGWLRGLLRCRTINFLGFRVPLYWSCVIVVFAGLKFGIFGLLFVAAAAGASQYACN 73
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10488.476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSL7_ECTSI1.920e-2569.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10488contigL-elsbetiae_contig10488:2244..3703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_002120.1
Exons2
Model size280
Cds size279
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815272.4193265-CDS-L-elsbetiae_contig10488:2243..24451622815272.4193265-CDS-L-elsbetiae_contig10488:2243..2445Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10488 2244..2445 +
1691682809.4049442-CDS-L-elsbetiae_contig10488:2243..24451691682809.4049442-CDS-L-elsbetiae_contig10488:2243..2445Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10488 2244..2445 +
1622815272.4341705-CDS-L-elsbetiae_contig10488:3626..37031622815272.4341705-CDS-L-elsbetiae_contig10488:3626..3703Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10488 3627..3703 +
1691682809.4141507-CDS-L-elsbetiae_contig10488:3626..37031691682809.4141507-CDS-L-elsbetiae_contig10488:3626..3703Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10488 3627..3703 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10488.476.1prot_L-elsbetiae_contig10488.476.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10488 2244..3703 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10488.476.1

>prot_L-elsbetiae_contig10488.476.1 ID=prot_L-elsbetiae_contig10488.476.1|Name=mRNA_L-elsbetiae_contig10488.476.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=93bp
MVRLVEGQIFSDDEGGGSAGGSLARLLRSGTINLLGFRVPLYWTCVIAVF
ASLRFGVPGLLFVGVLAGASHYGCNDEGGSSGGSGGRRRPFSR
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mRNA from alignment at L-elsbetiae_contig10488:2244..3703+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10488.476.1 ID=mRNA_L-elsbetiae_contig10488.476.1|Name=mRNA_L-elsbetiae_contig10488.476.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1460bp|location=Sequence derived from alignment at L-elsbetiae_contig10488:2244..3703+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGCGCTTGGTAGAGGGTCAAATTTTCAGTGATGACGAGGGGGGGGG
ATCCGCGGGTGGATCCCTTGCGAGGTTGCTCCGGAGTGGCACAATCAACT
TGCTGGGATTTCGTGTTCCTCTCTATTGGACTTGCGTCATAGCTGTCTTT
GCTTCGCTTCGTTTTGGCGTCCCGGGGCTGTTGTTTGTGGGCGTGCTAGC
AGGTGAGACAGTAGCTAATGTGGGTGGGTGGTTTGAGTAGGTCTGAGTAA
GAAGAATGTGTCTTGGGTTGATGGTACCATGATGTGTACTTCAACGTGTA
CATTCGAAGCTGCTGCCCAGCAGACCGAAGCCTGCTCCCCGTGGACAGAG
GAAACCAAAAAGAGAACGCCAAAGTCGCGTATGTATCTCTCACGGAGACA
CGCATAGAGATAGAGGAGGGAAGAGGAAGGGCGGGACAGAGTCAGTAGAC
AGCAGCTTGCTGTTTTTGGTAGATCCTGCCGGGGACCGTCCGCACCCCTC
GTACCAACAGTCCAATCTCCGAAGACGTGGAAGAGTGCATATGTAGTGCA
CCCATACTACATACTCCGCGCGGGCTGCGGAGGAATTATTTCTCAAGTTT
TTTCCATGCGCGCGTGATGGCCGCGTTTATAGACTCGTGACGGGACATGC
ACCCTCACCGTGCTTGTCTCAACCCCTTTGCAACGCCAAGAAATATTTAT
TTAATTGCAAGCCTGTGAGTGGATCTTACTCGCACAGTCCCTGATGCAGG
CTCCTTCTCTATAATCCCTATCATTTGGCCCCAAATCGATTTCGGGGCCA
AATGATATACCTTTATGGGGCACCCGTTCTAAACTGGGGTCGAAAAGTTT
GTTTTATGACTTGGGGACTTGGGGCCATAATGTGGCCCCAAATGCTTTTG
GTCTTAAGGGGTTAAACCTCGGCGGGAAGATTCGCTGCTTTGTCCCTTCT
CGCCGACTTGCCGAGCTCCTCTCTGTTTTCTACCTATGTACATACTTCGA
AGTAGATGGGTTTTCCCGCGGGCCTCCACAACAGACGTAATTTGTCTACA
GGAAGCACGCTACCCCCGTTCGTCCTGTGACAGGTTGTGGCGTGGTATTT
CTGACAATCTGACATGTGCGTGGTAGAGCGCTTTCTTTGCAATCCAAGGG
TGCTCTCAAAAGCCGGGGCCTCGCGTGTGATCACCTTCACACATTGTATG
TAGTTTCCTGCCACATCTAAGAGTGTCTGGTACGTGAAGCACTGCTTGCG
GTCACCCGACCCACCCAACGCCGCCGTTCGCGAGCAAAGAAATACTACAT
ACATAGACAGGTCTGAATGGGAATCAGCTATTCAGCGCAAGAGGGGTCCA
TGTTCCAACGCCGTCGACATGTTCTGAATCCAGGCGCCAGCCACTACGGG
TGCAACGATGAAGGTGGAAGCAGCGGTGGGAGCGGCGGCCGCAGACGACC
TTTTTCCCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10488:2244..3703+

>mRNA_L-elsbetiae_contig10488.476.1 ID=mRNA_L-elsbetiae_contig10488.476.1|Name=mRNA_L-elsbetiae_contig10488.476.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig10488:2244..3703+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGCGCTTGGTAGAGGGTCAAATTTTCAGTGATGACGAGGGGGGGGG
ATCCGCGGGTGGATCCCTTGCGAGGTTGCTCCGGAGTGGCACAATCAACT
TGCTGGGATTTCGTGTTCCTCTCTATTGGACTTGCGTCATAGCTGTCTTT
GCTTCGCTTCGTTTTGGCGTCCCGGGGCTGTTGTTTGTGGGCGTGCTAGC
AGATGGTGCGCTTGGTAGAGGGTCAAATTTTCAGTGATGACGAGGGGGGG
GGATCCGCGGGTGGATCCCTTGCGAGGTTGCTCCGGAGTGGCACAATCAA
CTTGCTGGGATTTCGTGTTCCTCTCTATTGGACTTGCGTCATAGCTGTCT
TTGCTTCGCTTCGTTTTGGCGTCCCGGGGCTGTTGTTTGTGGGCGTGCTA
GCAGGCGCCAGCCACTACGGGTGCAACGATGAAGGTGGAAGCAGCGGTGG
GAGCGGCGGCCGCAGACGACCTTTTTCCCGAGCGCCAGCCACTACGGGTG
CAACGATGAAGGTGGAAGCAGCGGTGGGAGCGGCGGCCGCAGACGACCTT
TTTCCCGA
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