mRNA_L-elsbetiae_contig10487.475.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10487.475.1
Unique NamemRNA_L-elsbetiae_contig10487.475.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10487.475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10487contigL-elsbetiae_contig10487:947..1498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size554
Cds size351
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815272.3682683-UTR-L-elsbetiae_contig10487:946..11471622815272.3682683-UTR-L-elsbetiae_contig10487:946..1147Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10487 947..1147 +
1691682809.385868-UTR-L-elsbetiae_contig10487:946..11471691682809.385868-UTR-L-elsbetiae_contig10487:946..1147Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10487 947..1147 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815272.382275-CDS-L-elsbetiae_contig10487:1147..14981622815272.382275-CDS-L-elsbetiae_contig10487:1147..1498Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10487 1148..1498 +
1691682809.3942215-CDS-L-elsbetiae_contig10487:1147..14981691682809.3942215-CDS-L-elsbetiae_contig10487:1147..1498Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10487 1148..1498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10487.475.1prot_L-elsbetiae_contig10487.475.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10487 1148..1498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10487.475.1

>prot_L-elsbetiae_contig10487.475.1 ID=prot_L-elsbetiae_contig10487.475.1|Name=mRNA_L-elsbetiae_contig10487.475.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
MHYNMEACVRTYIHTHVQKKKKKKKQADRQASTRPELPKQKEEGSHQESK
KTRIGLDRDDELAYSQPHNTNLPSSNRNLDQSYLLVGNEDPRIGGSDVDC
VKQSRQQDYQDKAHTTT
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mRNA from alignment at L-elsbetiae_contig10487:947..1498+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10487.475.1 ID=mRNA_L-elsbetiae_contig10487.475.1|Name=mRNA_L-elsbetiae_contig10487.475.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig10487:947..1498+ (Laminarionema elsbetiae ELsaHSoW15)
GGTCCAGCCCAGTAGAAAAACACCTAAATGACGAAAAAGTCCATCACCTC
CCCTGCATAACTCTGCCAGGTCAAACAGCATGTATTTCGGGGAGAAACCC
TCCGTAACGCTGTGGTGGTGTCGTCTTCCGTCATAGTAGGAACACGTCAC
TCTCTATCTGTCTTAGTGCAGATAGAAAGTAAGATTAGTCTTACGGGAAA
CATGCACTACAATATGGAGGCATGTGTACGTACATACATACATACGCACG
TCCAAAAAAAAAAAAAAAAAAAAAAACAGGCAGACAGGCAGGCAAGTACT
CGTCCTGAATTGCCGAAGCAAAAGGAGGAGGGAAGCCACCAGGAAAGTAA
GAAGACGAGGATTGGTCTTGACAGGGATGATGAGCTTGCATATTCCCAAC
CTCACAACACGAATCTTCCTTCTTCGAACCGCAATCTTGATCAATCGTAC
CTATTGGTTGGCAATGAAGACCCCAGGATCGGAGGAAGCGATGTTGATTG
TGTGAAGCAATCGCGACAGCAGGATTACCAGGATAAGGCACATACTACTA
CA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10487:947..1498+

>mRNA_L-elsbetiae_contig10487.475.1 ID=mRNA_L-elsbetiae_contig10487.475.1|Name=mRNA_L-elsbetiae_contig10487.475.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig10487:947..1498+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACTACAATATGGAGGCATGTGTACGTACATACATACATACGCACGT
CCAAAAAAAAAAAAAAAAAAAAAAACAGGCAGACAGGCAGGCAAGTACTC
GTCCTGAATTGCCGAAGCAAAAGGAGGAGGGAAGCCACCAGGAAAGTAAG
AAGACGAGGATTGGTCTTGACAGGGATGATGAGCTTGCATATTCCCAACC
TCACAACACGAATCTTCCTTCTTCGAACCGCAATCTTGATCAATCGTACC
TATTGGTTGGCAATGAAGACCCCAGGATCGGAGGAAGCGATGTTGATTGT
GTGAAGCAATCGCGACAGCAGGATTACCAGGATAAGGCACATACTACTAC
AATGCACTACAATATGGAGGCATGTGTACGTACATACATACATACGCACG
TCCAAAAAAAAAAAAAAAAAAAAAAACAGGCAGACAGGCAGGCAAGTACT
CGTCCTGAATTGCCGAAGCAAAAGGAGGAGGGAAGCCACCAGGAAAGTAA
GAAGACGAGGATTGGTCTTGACAGGGATGATGAGCTTGCATATTCCCAAC
CTCACAACACGAATCTTCCTTCTTCGAACCGCAATCTTGATCAATCGTAC
CTATTGGTTGGCAATGAAGACCCCAGGATCGGAGGAAGCGATGTTGATTG
TGTGAAGCAATCGCGACAGCAGGATTACCAGGATAAGGCACATACTACTA
CA
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