mRNA_L-elsbetiae_contig10478.467.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10478.467.1
Unique NamemRNA_L-elsbetiae_contig10478.467.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10478.467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10478contigL-elsbetiae_contig10478:4807..5946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_009520.1
Exons2
Model size164
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815271.4274826-CDS-L-elsbetiae_contig10478:4806..48901622815271.4274826-CDS-L-elsbetiae_contig10478:4806..4890Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10478 4807..4890 +
1691682808.842905-CDS-L-elsbetiae_contig10478:4806..48901691682808.842905-CDS-L-elsbetiae_contig10478:4806..4890Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10478 4807..4890 +
1622815271.5348573-CDS-L-elsbetiae_contig10478:5866..59441622815271.5348573-CDS-L-elsbetiae_contig10478:5866..5944Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10478 5867..5944 +
1691682808.8531263-CDS-L-elsbetiae_contig10478:5866..59441691682808.8531263-CDS-L-elsbetiae_contig10478:5866..5944Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10478 5867..5944 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10478.467.1prot_L-elsbetiae_contig10478.467.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10478 4807..5944 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10478.467.1

>prot_L-elsbetiae_contig10478.467.1 ID=prot_L-elsbetiae_contig10478.467.1|Name=mRNA_L-elsbetiae_contig10478.467.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=54bp
FCGGSSTCWSQEEGRCNGRCDEAYQSSKDTKFICNGGGPRSRGGAPSSRA
AARG
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mRNA from alignment at L-elsbetiae_contig10478:4807..5946+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10478.467.1 ID=mRNA_L-elsbetiae_contig10478.467.1|Name=mRNA_L-elsbetiae_contig10478.467.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1140bp|location=Sequence derived from alignment at L-elsbetiae_contig10478:4807..5946+ (Laminarionema elsbetiae ELsaHSoW15)
TTTTGCGGGGGCAGCAGTACTTGCTGGAGTCAAGAGGAAGGCCGATGCAA
TGGACGCTGCGACGAGGCTTACCAAAGTAGCAAGGTAAACCAGCACTGCT
GTTGTGTTGCATTGTTTTTGTGTTGTGTGCTCAGTGTAACGTTTCTGGTC
AAAATGGTTGTTCTTTTGTTCACTGCGCAATACGGTTACCATTCCGAGCG
CGCATCATGGGTCATCTATGCAGCCTGTTCTGTTGTTCTCCGCAGGTACT
GATCGACGCACGTGCTCTCTCCACTCTTTTCACCGACACCGCTCCCACGT
CTGTGTTTTCTTTAATTTGCTTTCTGCAGACCGGTCATGACCAAACTCGT
CAGTGTTGACATCCTGGGAGACTCTCTAGACACGGAAATCGACATCCAGC
ACCCTGTTGGTCGACTCGTCATGCTTGCTTTCATCAACGTCGCCGCCAAC
CGTTCAGTTTTGACCCAAGACGATGGAGCCGTTCTGAAAAGGGCCTTGAC
CTTTCTGTGCAACAATTTGGACGACCATGGAACGATCGTCCTTGCACTGC
CGGACTACTGGGACTTCCCTCGGACAAAGCTCAAAGGTAATGTCTATCTT
CGTTGTCCTGTCAAGTTGAGGTGTCTGCAGGCTGTTAAAATGCGTTAGCT
GGCGCAGGGCTGAATGGTATGAGAGTCATTGTTCGTTGTGGTTCTTTACA
GCACCGCGCCTTACCTTACCCCACCTCGCTACGATGGTCTATCTAAATTA
ATCACCGTAAACAGTACTCTAAATGAATCGCCGTAAGCAGTGCAACCTCA
GTCGAATCCTCTCCTCAGATCGTGCTACCCCAGCCTTTTCTCCTCTGGCC
CTTCCAACCGTTCACCAAACCCCACTCGCCCCCATCCCTCCAACTTCAAA
ACGTTTCCCGCTGTTCTTAGCGTGGTTCAAAGTCGCAGGTCTGATCCTCG
AGGACTCTCCCGTTGTCTCTCTTTACCTACATGGGAAAAGCGGGCGACCG
GTGGGGAAGGACCTGTACGTTTATCCTACGCAAGGTTCCGTGACTCTACT
GGCCCACAAGGACACCAAGTTCATCTGCAATGGAGGAGGACCCCGGTCGA
GAGGAGGGGCGCCCTCATCCCGTGCGGCGGCTCGGGGTTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10478:4807..5946+

>mRNA_L-elsbetiae_contig10478.467.1 ID=mRNA_L-elsbetiae_contig10478.467.1|Name=mRNA_L-elsbetiae_contig10478.467.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=324bp|location=Sequence derived from alignment at L-elsbetiae_contig10478:4807..5946+ (Laminarionema elsbetiae ELsaHSoW15)
TTTTGCGGGGGCAGCAGTACTTGCTGGAGTCAAGAGGAAGGCCGATGCAA
TGGACGCTGCGACGAGGCTTACCAAAGTAGCAAGTTTTGCGGGGGCAGCA
GTACTTGCTGGAGTCAAGAGGAAGGCCGATGCAATGGACGCTGCGACGAG
GCTTACCAAAGTAGCAAGGACACCAAGTTCATCTGCAATGGAGGAGGACC
CCGGTCGAGAGGAGGGGCGCCCTCATCCCGTGCGGCGGCTCGGGGTGACA
CCAAGTTCATCTGCAATGGAGGAGGACCCCGGTCGAGAGGAGGGGCGCCC
TCATCCCGTGCGGCGGCTCGGGGT
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