mRNA_L-elsbetiae_contig1047.463.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1047.463.1
Unique NamemRNA_L-elsbetiae_contig1047.463.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1047.463.1 vs. uniprot
Match: A0A6H5L0F8_9PHAE (TPT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0F8_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 1.600e-70
Identity = 117/143 (81.82%), Postives = 130/143 (90.91%), Query Frame = 1 
Query:    1 MSSPKAAAFVALMFALGAALDRSSQAALKELPLPFVVATLHFGAGLLWIFPAWTIGMRQTPRLTETQKKRVAPLAFLHATGHLCTLGVLGAGSLAVTQVFQAAEPVIVSVMSWAAGEESGQQHLVAWLSLLLLTAGVLVTFRE 429
            MSS KAAAFVALMFALGAALDR+SQ+AL+E PLP++VATLHFGAGLLWIFPAWTIGMRQTPRL++TQKKRVAPLAFLHA GHLC   VLGAGSLAVTQVFQAAEPV+VSVMS   G   G+QHLVAWL+L+L TAGVL+TF+E
Sbjct:    1 MSSAKAAAFVALMFALGAALDRTSQSALEEFPLPWMVATLHFGAGLLWIFPAWTIGMRQTPRLSDTQKKRVAPLAFLHAAGHLC---VLGAGSLAVTQVFQAAEPVVVSVMSLVVGS-GGKQHLVAWLALVLATAGVLMTFQE 139
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BLAST of mRNA_L-elsbetiae_contig1047.463.1 vs. uniprot
Match: D8LMY5_ECTSI (TPT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMY5_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 2.570e-70
Identity = 117/143 (81.82%), Postives = 129/143 (90.21%), Query Frame = 1 
Query:    1 MSSPKAAAFVALMFALGAALDRSSQAALKELPLPFVVATLHFGAGLLWIFPAWTIGMRQTPRLTETQKKRVAPLAFLHATGHLCTLGVLGAGSLAVTQVFQAAEPVIVSVMSWAAGEESGQQHLVAWLSLLLLTAGVLVTFRE 429
            MSS KAAAFVALMFALG ALDR+SQ+AL+E PLP++VATLHFGAGLLWIFPAWTIGMRQTPRL++TQKKRVAPLAFLHA GHLC   VLGAGSLAVTQVFQAAEPV+VSVMS   G   G+QHLVAWL+L+L TAGVL+TFRE
Sbjct:    1 MSSAKAAAFVALMFALGVALDRTSQSALEEFPLPWMVATLHFGAGLLWIFPAWTIGMRQTPRLSDTQKKRVAPLAFLHAAGHLC---VLGAGSLAVTQVFQAAEPVVVSVMSLVVGS-GGKQHLVAWLALVLATAGVLMTFRE 139
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BLAST of mRNA_L-elsbetiae_contig1047.463.1 vs. uniprot
Match: A0A7S0DYK3_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0DYK3_9EUKA)

HSP 1 Score: 78.2 bits (191), Expect = 2.070e-14
Identity = 40/111 (36.04%), Postives = 61/111 (54.95%), Query Frame = 1 
Query:    4 SSPKAAAFVALMFALGAALDRSSQAALKELPLPFVVATLHFGAGLLWIFPAWTIGMRQTPRLTETQKKRVAPLAFLHATGHLCTLGVLGAGSLAVTQVFQAAEPVIVSVMS 336
            S+ K   F  L + L    + S+   LK L LP+ +A L  G GLL++ P W  G+ + PRL++   K +AP+A +H  G   T+   GAGSLA   V ++ EP+  +V +
Sbjct:    6 SNLKIVCFFLLWYVLNVMYNESNMTVLKVLGLPWSLAALQLGLGLLYVVPKWATGLGKVPRLSQANLKAIAPIAMIHGAGQCVTVLACGAGSLAFVNVVKSLEPLFNTVFA 116
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BLAST of mRNA_L-elsbetiae_contig1047.463.1 vs. uniprot
Match: A0A6T8ALR7_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A6T8ALR7_9EUKA)

HSP 1 Score: 71.6 bits (174), Expect = 4.990e-12
Identity = 37/104 (35.58%), Postives = 57/104 (54.81%), Query Frame = 1 
Query:    4 SSPKAAAFVALMFALGAALDRSSQAALKELPLPFVVATLHFGAGLLWIFPAWTIGMRQTPRLTETQKKRVAPLAFLHATGHLCTLGVLGAGSLAVTQVFQAAEP 315
            SS K   F  + + +    +  ++  LK L LP+ +A L  G GLL++ P W  G+++ P LT +    +AP+A +H  G   T+  LGAGSLA   V ++ EP
Sbjct:    7 SSVKILFFFLIWYVINVVYNDMNKTVLKVLDLPWTMACLQLGLGLLYVGPLWLTGLKKAPSLTTSNVMTIAPIALIHGLGQCVTVLSLGAGSLAFVNVVKSLEP 110
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BLAST of mRNA_L-elsbetiae_contig1047.463.1 vs. uniprot
Match: A0A7S0P061_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P061_9EUKA)

HSP 1 Score: 68.6 bits (166), Expect = 6.600e-11
Identity = 36/102 (35.29%), Postives = 58/102 (56.86%), Query Frame = 1 
Query:   40 FALGAALDRSSQAALKELPLPFVVATLHFGAGLLWIFPAWTIGMRQTPRLTETQKKRVAPLAFLHATGHLCTLGVLGAGSLAVTQVFQAAEPVIVSVMSWAA 345
            +A   A +  ++  L EL  P+V++ +    G+    PAW +G+R+ PRLT     R  P+  LHA GH   +  +GAGS+    V +A EP+I +V+++AA
Sbjct:   12 YAFNGAFNVENKLILNELMYPWVISWVQLATGIGIALPAWGLGLRRCPRLTWGVALRFVPIGVLHAAGHALQVAGIGAGSVYFGTVIKATEPLIGTVIAFAA 113
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1047.463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L0F8_9PHAE1.600e-7081.82TPT domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LMY5_ECTSI2.570e-7081.82TPT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S0DYK3_9EUKA2.070e-1436.04Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A6T8ALR7_9EUKA4.990e-1235.58Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7S0P061_9EUKA6.600e-1135.29Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1047contigL-elsbetiae_contig1047:112..1753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score218.0
Seed ortholog evalue2.8e-54
Seed eggNOG ortholog2880.D8LMY5
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.carbohydrate transport
EggNOG OGsKOG1441@1,KOG1441@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionTriose-phosphate transporter domain
Ec32 orthologEc-02_004130.1
Exons3
Model size429
Cds size429
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1047.463.1prot_L-elsbetiae_contig1047.463.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1047 112..1753 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815271.001823-CDS-L-elsbetiae_contig1047:111..2371622815271.001823-CDS-L-elsbetiae_contig1047:111..237Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1047 112..237 -
1691682808.5039377-CDS-L-elsbetiae_contig1047:111..2371691682808.5039377-CDS-L-elsbetiae_contig1047:111..237Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1047 112..237 -
1622815271.0128-CDS-L-elsbetiae_contig1047:1002..11461622815271.0128-CDS-L-elsbetiae_contig1047:1002..1146Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1047 1003..1146 -
1691682808.5208511-CDS-L-elsbetiae_contig1047:1002..11461691682808.5208511-CDS-L-elsbetiae_contig1047:1002..1146Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1047 1003..1146 -
1622815271.024905-CDS-L-elsbetiae_contig1047:1594..17531622815271.024905-CDS-L-elsbetiae_contig1047:1594..1753Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1047 1595..1753 -
1691682808.5355847-CDS-L-elsbetiae_contig1047:1594..17531691682808.5355847-CDS-L-elsbetiae_contig1047:1594..1753Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1047 1595..1753 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1047.463.1

>prot_L-elsbetiae_contig1047.463.1 ID=prot_L-elsbetiae_contig1047.463.1|Name=mRNA_L-elsbetiae_contig1047.463.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
MSSPKAAAFVALMFALGAALDRSSQAALKELPLPFVVATLHFGAGLLWIF
PAWTIGMRQTPRLTETQKKRVAPLAFLHATGHLCTLGVLGAGSLAVTQVF
QAAEPVIVSVMSWAAGEESGQQHLVAWLSLLLLTAGVLVTFRE
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mRNA from alignment at L-elsbetiae_contig1047:112..1753-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1047.463.1 ID=mRNA_L-elsbetiae_contig1047.463.1|Name=mRNA_L-elsbetiae_contig1047.463.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1642bp|location=Sequence derived from alignment at L-elsbetiae_contig1047:112..1753- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCTCCCCGAAGGCGGCCGCGTTTGTCGCGCTCATGTTCGCGCTGGG
GGCGGCCCTGGACAGGTCAAGCCAGGCGGCCCTCAAAGAACTCCCGTTGC
CCTTTGTGGTGGCCACGCTGCACTTCGGGGCGGGGTTGCTTTGGATCTTT
CCGGCGTGGGTGAGAAAAAAAAAAGAGACAGACGAATGTAATGAGCTTAC
ATGTGTTTTTTCTACCTGTCTGTTTGTGTGGTTGCGTTTTGCCATCCCAC
TGCTGTTGTACAATAACACCGGCGAAGTGGATTTTTTTTGTCTATTTTAG
GTTGTTTTTGTTGTTCGCTGTTGGGATTTGTGGTTCCTCTAGGTTGCGTG
TTTTTTTTCAGGCCGAAACACGCGGGCTGTCGCTAGAATAGTGCGACAAC
CTCCCCTCCTCTACATGATGACACGCACACGGGACGAGAGGACACTTTCC
ATTCACAACGCCGCAGCAGCAGCTGCTGCTGCTGCTGCTGCTGCTGCTTT
TTGTGGCGTCTCACGTTTTCTGTTGCTGCTGCCGCCAACACTGCTGCTGC
TTTTTGTGGCGTCTCACGTTTTCTGTTGCTGCTGCTGCCAACACTGCTGT
CGTGCAGACGATCGGCATGCGACAAACGCCCCGCCTTACCGAGACGCAGA
AGAAGAGAGTGGCACCCTTGGCCTTCCTTCACGCCACGGGGCACCTCTGC
ACGTTAGGAGTTCTGGGGGCGGGCTCTCTGGCGGTGACACAAGTGTTTCA
GGTACGGAAACCGGGCTTTGGTTAGGTGGCTGCTTGAATGCGACTGAGAC
CCGGGGCGTGCTCAATTGCTTTGCGTACCTTAGCCATGTCAATCACGCAC
CGACGGGGCCCCTTTCGAGACAGAGCACCGTTCCCACCCCTGCTTGGAGC
GTTATGAACACAGGGACCCTCGTTCGGTTCATTTGGCGTGATTCATGGTT
CACAAATCTAGCGTCTGGGATAGGGGGGGGGGGGGGGCAGGGGCCAAAAG
TAAAGGTGGCAAGCTTGAAATAGCGCTTCGCGCCCTACGCTGGGTAGCTG
GGTAGAGCAGGCAGTGTTTTGTTTCTCTTGGACACTGAATGTTCTAGTAC
GTTATGTTCCGATGTTGGAGATGGAAAACTGCAGCCAACCGGCCTGCCTC
TTTTTGACTTTTTAGTTCTCCATTCTCTCCATTCTCTCCACTCGGGACAA
ATTTCGAGGTGTTCCACCTACCCACCCACCCACCTCAACCTTCCCCCCCC
CCACCCCGCGACGCGCTTCCCCACAGGTGCAATATATTCCACTGCCACCA
TCTAATGTCGACCTCGCCGCGATATTTCGGAATCAAACTACATGCAATGC
CAACCATCTTCGTGTACCTTTCGTCTGCCCCCCCCCCCCTCCCGTGAAAC
GCTCGCCCACGCCAGCACCTGCGGTTGCTGAAGCCACGCTTTCTGTATCA
CGCCTCTCGGGGCGTTTTTTTTATGACTCTGTATTTTATACACTTGCGAA
ACTCGATGCCGGGCAGGCGGCGGAGCCGGTGATTGTGTCCGTCATGTCTT
GGGCCGCGGGGGAAGAAAGCGGGCAGCAACATCTAGTGGCGTGGCTGTCC
CTCCTGCTGCTGACGGCGGGTGTGCTCGTGACGTTTCGAGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1047:112..1753-

>mRNA_L-elsbetiae_contig1047.463.1 ID=mRNA_L-elsbetiae_contig1047.463.1|Name=mRNA_L-elsbetiae_contig1047.463.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig1047:112..1753- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCTCCCCGAAGGCGGCCGCGTTTGTCGCGCTCATGTTCGCGCTGGG
GGCGGCCCTGGACAGGTCAAGCCAGGCGGCCCTCAAAGAACTCCCGTTGC
CCTTTGTGGTGGCCACGCTGCACTTCGGGGCGGGGTTGCTTTGGATCTTT
CCGGCGTGGATGAGCTCCCCGAAGGCGGCCGCGTTTGTCGCGCTCATGTT
CGCGCTGGGGGCGGCCCTGGACAGGTCAAGCCAGGCGGCCCTCAAAGAAC
TCCCGTTGCCCTTTGTGGTGGCCACGCTGCACTTCGGGGCGGGGTTGCTT
TGGATCTTTCCGGCGTGGACGATCGGCATGCGACAAACGCCCCGCCTTAC
CGAGACGCAGAAGAAGAGAGTGGCACCCTTGGCCTTCCTTCACGCCACGG
GGCACCTCTGCACGTTAGGAGTTCTGGGGGCGGGCTCTCTGGCGGTGACA
CAAGTGTTTCAGACGATCGGCATGCGACAAACGCCCCGCCTTACCGAGAC
GCAGAAGAAGAGAGTGGCACCCTTGGCCTTCCTTCACGCCACGGGGCACC
TCTGCACGTTAGGAGTTCTGGGGGCGGGCTCTCTGGCGGTGACACAAGTG
TTTCAGGCGGCGGAGCCGGTGATTGTGTCCGTCATGTCTTGGGCCGCGGG
GGAAGAAAGCGGGCAGCAACATCTAGTGGCGTGGCTGTCCCTCCTGCTGC
TGACGGCGGGTGTGCTCGTGACGTTTCGAGAGGCGGCGGAGCCGGTGATT
GTGTCCGTCATGTCTTGGGCCGCGGGGGAAGAAAGCGGGCAGCAACATCT
AGTGGCGTGGCTGTCCCTCCTGCTGCTGACGGCGGGTGTGCTCGTGACGT
TTCGAGAG
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