mRNA_L-elsbetiae_contig10469.460.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10469.460.1
Unique NamemRNA_L-elsbetiae_contig10469.460.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10469.460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10469contigL-elsbetiae_contig10469:1371..3187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size537
Cds size534
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10469.460.1prot_L-elsbetiae_contig10469.460.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10469 1371..3185 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.7743735-CDS-L-elsbetiae_contig10469:1370..14091622815270.7743735-CDS-L-elsbetiae_contig10469:1370..1409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10469 1371..1409 +
1691682808.3975017-CDS-L-elsbetiae_contig10469:1370..14091691682808.3975017-CDS-L-elsbetiae_contig10469:1370..1409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10469 1371..1409 +
1622815270.7861397-CDS-L-elsbetiae_contig10469:1611..17101622815270.7861397-CDS-L-elsbetiae_contig10469:1611..1710Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10469 1612..1710 +
1691682808.40795-CDS-L-elsbetiae_contig10469:1611..17101691682808.40795-CDS-L-elsbetiae_contig10469:1611..1710Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10469 1612..1710 +
1622815270.8001592-CDS-L-elsbetiae_contig10469:2127..22261622815270.8001592-CDS-L-elsbetiae_contig10469:2127..2226Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10469 2128..2226 +
1691682808.4154818-CDS-L-elsbetiae_contig10469:2127..22261691682808.4154818-CDS-L-elsbetiae_contig10469:2127..2226Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10469 2128..2226 +
1622815270.8133762-CDS-L-elsbetiae_contig10469:2888..31851622815270.8133762-CDS-L-elsbetiae_contig10469:2888..3185Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10469 2889..3185 +
1691682808.4232442-CDS-L-elsbetiae_contig10469:2888..31851691682808.4232442-CDS-L-elsbetiae_contig10469:2888..3185Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10469 2889..3185 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10469.460.1

>prot_L-elsbetiae_contig10469.460.1 ID=prot_L-elsbetiae_contig10469.460.1|Name=mRNA_L-elsbetiae_contig10469.460.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=178bp
GGRGGGAGAAGDEVMPNRVGDGGGDMLMAHEAAMAGFNDSTATLDRARAM
ETARMLEQLEVRLAYQETGSTDGTGCGSDYVGSDDADFGDRDQDFLYVEE
ENDEEDDRSAVADNSGDGAGNVDADPVTGHRHGTENRDREGPAAAAAAAA
AAAAATAGGDAAALDVDDGDDGVVAREG
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mRNA from alignment at L-elsbetiae_contig10469:1371..3187+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10469.460.1 ID=mRNA_L-elsbetiae_contig10469.460.1|Name=mRNA_L-elsbetiae_contig10469.460.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1817bp|location=Sequence derived from alignment at L-elsbetiae_contig10469:1371..3187+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGGTCGGGGTGGGGGCGCGGGGGCTGCGGGAGATGAGGTGGGATGGGT
GTGGCGAACATTTTTTTCCCGTGTTGTTTTTTTTTTTTGCTGTGTGTTTT
CGCCTCCTCTTCTCCCTCGCGTGTTAGGAACGCCGCGAATCGCAAGCTTC
CGCTGTCGCCGTCCTATTGTGTCGCCGTCCTTTGTGTAATAAGGCTTGCT
GTTGGTTTGTCGTGTTGTTTGTTGATGGTGTCGACATGTAGGTGATGCCG
AACCGCGTTGGCGATGGCGGCGGCGACATGCTTATGGCGCACGAAGCGGC
GATGGCTGGATTCAACGACAGCACGGCGACGCTCGACCGGGTAAGGTCTA
TGGAGTGCCGCATCTCACGACACGCACGTATTTTTGTATTTTCATCGCGT
GAAACCAGCGCTTGGGGGGGGGGGGGCACCGTGCCAGAGCCCCGATCCGT
GGTTCACACAAAAGGGTCATTCCTCCCCTGAGCCCCCCACACCCGCCCCT
CTGTGTTGCGTGCCCCCGATTTTTGACTCGAGGAGAGTTCGGCAGCAGTC
TCTTCCCTCGTGTGTGCACACGATGTGTTGGGTTTAAGTACATGGCAAAG
GTTTGAGATGACGCATCACCACCAGCACTAGCAGTATGTCTAAGGGCTTA
GCAGCAGGAATTTTGGGACGGCGAAGTCACCACCACCAGTACTCTTTAGT
ACCGGCACCGGCGCTGCCATCACCGAGAAGATATTACTCCTGTTATTATT
CGGGCAGGCCCGGGCCATGGAGACAGCAAGGATGCTTGAGCAGCTTGAGG
TCAGGTTGGCGTACCAAGAAACGGGCTCCACGGATGGAACCGGTTGCGGA
TCCGACGTGAGTGTTGCCTTGTTGTTGCCGTTGTTTTGTTGTTGTGTTGT
TTTCGTTGTTGCTGCTGCTGTTGTTGTCGTGATTGTGTTGTTGTCTTTCA
CATTAAAACATTAAAAACCCACTCCTATATCTCTATACCCAGTGCCTCAA
TCTGTCCGTATTGACTGCCGGCGGTTGTGGAAAGGAAATCAAGAATCAAT
TTCAGCTTGCGGCCCTTGCACGAGGCAAGGCACACAGTAAATTACGCAAA
TATGCATGCCTCAAGAACGGCGCCGCCGTTGACAAAGTCTCGGTCCAAGC
ATGGACATCACTGGCTTATCACGCCTCCCGCTTCCTCCTTTCCCTTTGAT
TTGTTTTCAATACCTCAAGGATGGTGAAACCTCCCCCCGCAAAGAGGCGG
GAAGACTACGTGGTGATTTGTACGATTCCATCCCATTGTTCGTTGGTGTT
CATTCGATTTCCGCACAGGCTTCAAAGCAATCGCACTTGCCGTGGAGTGT
TGTCGTCGCCCAAGAGTAGAACCCGAAACAATACGAGCGCGTGTGTTTCT
TTGATAAAATAGGATCGCACCCTCTGTGCGATTGATGCCGCGGAAGCTTT
GGTACTGATTCCGCCACCGGTCAACTTCTGATCCGTATCTCCCCCCCCCT
TGCGGAATGCGCGCACAGTACGTGGGCAGCGACGACGCAGACTTTGGCGA
CCGAGACCAAGATTTCCTGTACGTGGAGGAGGAGAACGACGAGGAAGACG
ATCGCTCTGCCGTCGCCGACAACTCGGGCGACGGTGCTGGCAATGTCGAC
GCTGACCCGGTGACCGGTCACCGCCACGGCACCGAAAACCGCGACCGCGA
AGGCCCTGCCGCAGCTGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTACTG
CTGGTGGTGATGCTGCTGCTCTCGATGTCGATGATGGTGATGATGGTGTC
GTTGCCCGGGAAGGCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10469:1371..3187+

>mRNA_L-elsbetiae_contig10469.460.1 ID=mRNA_L-elsbetiae_contig10469.460.1|Name=mRNA_L-elsbetiae_contig10469.460.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1068bp|location=Sequence derived from alignment at L-elsbetiae_contig10469:1371..3187+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGGTCGGGGTGGGGGCGCGGGGGCTGCGGGAGATGAGGGTGGTCGGGG
TGGGGGCGCGGGGGCTGCGGGAGATGAGGTGATGCCGAACCGCGTTGGCG
ATGGCGGCGGCGACATGCTTATGGCGCACGAAGCGGCGATGGCTGGATTC
AACGACAGCACGGCGACGCTCGACCGGGTGATGCCGAACCGCGTTGGCGA
TGGCGGCGGCGACATGCTTATGGCGCACGAAGCGGCGATGGCTGGATTCA
ACGACAGCACGGCGACGCTCGACCGGGCCCGGGCCATGGAGACAGCAAGG
ATGCTTGAGCAGCTTGAGGTCAGGTTGGCGTACCAAGAAACGGGCTCCAC
GGATGGAACCGGTTGCGGATCCGACGCCCGGGCCATGGAGACAGCAAGGA
TGCTTGAGCAGCTTGAGGTCAGGTTGGCGTACCAAGAAACGGGCTCCACG
GATGGAACCGGTTGCGGATCCGACTACGTGGGCAGCGACGACGCAGACTT
TGGCGACCGAGACCAAGATTTCCTGTACGTGGAGGAGGAGAACGACGAGG
AAGACGATCGCTCTGCCGTCGCCGACAACTCGGGCGACGGTGCTGGCAAT
GTCGACGCTGACCCGGTGACCGGTCACCGCCACGGCACCGAAAACCGCGA
CCGCGAAGGCCCTGCCGCAGCTGCCGCCGCCGCCGCCGCCGCCGCCGCCG
CTACTGCTGGTGGTGATGCTGCTGCTCTCGATGTCGATGATGGTGATGAT
GGTGTCGTTGCCCGGGAAGGCTACGTGGGCAGCGACGACGCAGACTTTGG
CGACCGAGACCAAGATTTCCTGTACGTGGAGGAGGAGAACGACGAGGAAG
ACGATCGCTCTGCCGTCGCCGACAACTCGGGCGACGGTGCTGGCAATGTC
GACGCTGACCCGGTGACCGGTCACCGCCACGGCACCGAAAACCGCGACCG
CGAAGGCCCTGCCGCAGCTGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTA
CTGCTGGTGGTGATGCTGCTGCTCTCGATGTCGATGATGGTGATGATGGT
GTCGTTGCCCGGGAAGGC
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