mRNA_L-elsbetiae_contig10465.457.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10465.457.1
Unique NamemRNA_L-elsbetiae_contig10465.457.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10465.457.1 vs. uniprot
Match: D7G2P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P5_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 1.460e-27
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:   19 QQLHRYLVHRESVSYRREGFRNMGNTCYLNACLQGLLSLSGFVGDLQRKCWVLAMLKPPPPPSAG 213
            QQL RY+ HRE +S RREGFRNMGNTCYLNACLQGLLSLSGFVGDL+RKCWVLAMLKPPPP + G
Sbjct:  241 QQLTRYMTHREPLS-RREGFRNMGNTCYLNACLQGLLSLSGFVGDLRRKCWVLAMLKPPPPAATG 304
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BLAST of mRNA_L-elsbetiae_contig10465.457.1 vs. uniprot
Match: A0A6H5KUE2_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUE2_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 3.700e-27
Identity = 55/67 (82.09%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:   13 GVQQLHRYLVHRESVSYRREGFRNMGNTCYLNACLQGLLSLSGFVGDLQRKCWVLAMLKPPPPPSAG 213
            G QQL RY+ HRE +S RREGFRNMGNTCYLNACLQGLLSLS FVGDL+RKCWVLAMLKPPPP + G
Sbjct:  344 GGQQLTRYMTHREPLS-RREGFRNMGNTCYLNACLQGLLSLSDFVGDLRRKCWVLAMLKPPPPAATG 409
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BLAST of mRNA_L-elsbetiae_contig10465.457.1 vs. uniprot
Match: A0A835YKZ9_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKZ9_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 6.160e-8
Identity = 27/41 (65.85%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:   64 RREGFRNMGNTCYLNACLQGLLSLSGFVGDLQRKCWVLAML 186
            R EGFRN+GNTCYLNA LQ LL L  FV DLQ   W  A+L
Sbjct:  329 RSEGFRNLGNTCYLNATLQALLGLKEFVDDLQASVWARAIL 369
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BLAST of mRNA_L-elsbetiae_contig10465.457.1 vs. uniprot
Match: L8HG84_ACACA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HG84_ACACA)

HSP 1 Score: 52.0 bits (123), Expect = 6.510e-6
Identity = 22/42 (52.38%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   58 SYRREGFRNMGNTCYLNACLQGLLSLSGFVGDLQRKCWVLAM 183
            +++REG +N+GNTCY+NA LQ LLSL  FV D+ R  ++ A+
Sbjct:   87 AFKREGLQNLGNTCYMNAVLQSLLSLETFVSDMNRDEFIQAL 128
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BLAST of mRNA_L-elsbetiae_contig10465.457.1 vs. uniprot
Match: L8HIP5_ACACA (Ubiquitin interaction motif domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HIP5_ACACA)

HSP 1 Score: 52.0 bits (123), Expect = 6.630e-6
Identity = 22/42 (52.38%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   58 SYRREGFRNMGNTCYLNACLQGLLSLSGFVGDLQRKCWVLAM 183
            +++REG +N+GNTCY+NA LQ LLSL  FV D+ R  ++ A+
Sbjct:   87 AFKREGLQNLGNTCYMNAVLQSLLSLETFVSDMNRDEFIQAL 128
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BLAST of mRNA_L-elsbetiae_contig10465.457.1 vs. uniprot
Match: A0A067C580_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C580_SAPPC)

HSP 1 Score: 52.0 bits (123), Expect = 6.730e-6
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:   55 VSYRREGFRNMGNTCYLNACLQGLLSLSGFVGDLQRKCWVLAMLKPPPP 201
            V+  ++G  N+GNTCY+NA LQ LLSL  FV  L+   WV A+ K P P
Sbjct: 1022 VAKSQQGLVNLGNTCYMNAVLQALLSLQAFVTTLRDDAWVTALTKMPLP 1070
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BLAST of mRNA_L-elsbetiae_contig10465.457.1 vs. uniprot
Match: T0R7M6_SAPDV (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R7M6_SAPDV)

HSP 1 Score: 51.6 bits (122), Expect = 9.060e-6
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:   55 VSYRREGFRNMGNTCYLNACLQGLLSLSGFVGDLQRKCWVLAMLKPPPP 201
            V+  ++G  N+GNTCY+NA LQ LLSL  FV  L+   WV ++ K P P
Sbjct:  389 VAKSQQGLVNLGNTCYMNAVLQALLSLQAFVSTLRDDAWVTSLTKVPLP 437
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BLAST of mRNA_L-elsbetiae_contig10465.457.1 vs. uniprot
Match: A0A1V9Y9L8_9STRA (Ubiquitin-specific protease n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y9L8_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 2.320e-5
Identity = 24/44 (54.55%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:   70 EGFRNMGNTCYLNACLQGLLSLSGFVGDLQRKCWVLAMLKPPPP 201
            +G  N+GNTCY+NA LQ LLSL GFV  L+   WV  + K P P
Sbjct:  398 QGLVNLGNTCYMNAVLQALLSLQGFVQVLRDDAWVAIVTKHPLP 441
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10465.457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G2P5_ECTSI1.460e-2784.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUE2_9PHAE3.700e-2782.09USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YKZ9_9STRA6.160e-865.85USP domain-containing protein n=1 Tax=Tribonema mi... [more]
L8HG84_ACACA6.510e-652.38Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Acan... [more]
L8HIP5_ACACA6.630e-652.38Ubiquitin interaction motif domain containing prot... [more]
A0A067C580_SAPPC6.730e-651.02Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
T0R7M6_SAPDV9.060e-648.98Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Sapr... [more]
A0A1V9Y9L8_9STRA2.320e-554.55Ubiquitin-specific protease n=1 Tax=Achlya hypogyn... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10465contigL-elsbetiae_contig10465:362..1175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.4
Seed ortholog evalue2.4e-23
Seed eggNOG ortholog2880.D7G2P5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ubiquitin carboxyl-terminal hydrolase
EggNOG OGs2EX8U@1,2SYYR@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionPeptidase C19, ubiquitin carboxyl-terminal hydrolase
Ec32 orthologEc-11_002980.1
Exons2
Model size232
Cds size231
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.6652336-CDS-L-elsbetiae_contig10465:361..4721622815270.6652336-CDS-L-elsbetiae_contig10465:361..472Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10465 362..472 -
1691682808.3321233-CDS-L-elsbetiae_contig10465:361..4721691682808.3321233-CDS-L-elsbetiae_contig10465:361..472Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10465 362..472 -
1622815270.6791842-CDS-L-elsbetiae_contig10465:1055..11751622815270.6791842-CDS-L-elsbetiae_contig10465:1055..1175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10465 1056..1175 -
1691682808.3512485-CDS-L-elsbetiae_contig10465:1055..11751691682808.3512485-CDS-L-elsbetiae_contig10465:1055..1175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10465 1056..1175 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10465.457.1prot_L-elsbetiae_contig10465.457.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10465 362..1175 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10465.457.1

>prot_L-elsbetiae_contig10465.457.1 ID=prot_L-elsbetiae_contig10465.457.1|Name=mRNA_L-elsbetiae_contig10465.457.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=77bp
MQQRGVQQLHRYLVHRESVSYRREGFRNMGNTCYLNACLQGLLSLSGFVG
DLQRKCWVLAMLKPPPPPSAGPNPTTA
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mRNA from alignment at L-elsbetiae_contig10465:362..1175-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10465.457.1 ID=mRNA_L-elsbetiae_contig10465.457.1|Name=mRNA_L-elsbetiae_contig10465.457.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=814bp|location=Sequence derived from alignment at L-elsbetiae_contig10465:362..1175- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGCAGCGGGGTGTGCAGCAGCTGCACCGGTACCTGGTGCACCGCGA
GTCCGTGTCGTATCGCAGGGAAGGCTTCCGGAACATGGGCAACACGTGCT
ACCTCAACGCCTGCCTCCAGGTGCTGACCCGGCTGCGCCTTCCTCCCTTC
CTTATTTCCTTCCCGAGATTCGCTTTGACTTGTGTGTTGTGTGGCGCGCG
TTGCTGTGCGGCTGCGTTGTGTCTGGCTTTTGCCGTGTGTCGCTGTGCGG
CTGCGTTGTGGCTGGCTTGTGCCGTGTGTCGCTGTGCGGCTGCGTTGTGG
CTGGCTTGTGCCGTGTGTCGCTGTGCGGCTACGTTTTGTCTGCGGTGTGT
TGGCGCGCATTTATGCGGCGCGATTTTTGGTCCCCGCAAAAGCGAAATTG
TTTGCAGGCGGTTGGTTTCGCCGCGCATCCGAGGACTAAAGATTCCTTCC
CAAAACGAAACACGCCTTGTTGGACACAGAAAAATGTCCTATCGTAGGGG
GGTTCGTTTTTCAACCACGTACCGCACCGCCCCTGCCTTGAAAAAGGGCG
TGGAGGAGTGGGTGGTGAACTGACTTAGGTTCAAGCAACGGCTGAGTAGC
CCCCAAATCCGCCTCCATATCTTCCCTGTGTACCTCCTGAGACATGTTTT
CCCTCCCTCCCTCTCTACGTCATGAAACGGCCAACATGCAATATGCAACG
CAGGGACTGCTGTCGCTCTCCGGCTTCGTCGGAGATCTCCAGCGGAAGTG
CTGGGTGCTCGCCATGCTCAAGCCCCCCCCCCCGCCATCGGCGGGGCCGA
ATCCGACAACAGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10465:362..1175-

>mRNA_L-elsbetiae_contig10465.457.1 ID=mRNA_L-elsbetiae_contig10465.457.1|Name=mRNA_L-elsbetiae_contig10465.457.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=462bp|location=Sequence derived from alignment at L-elsbetiae_contig10465:362..1175- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGCAGCGGGGTGTGCAGCAGCTGCACCGGTACCTGGTGCACCGCGA
GTCCGTGTCGTATCGCAGGGAAGGCTTCCGGAACATGGGCAACACGTGCT
ACCTCAACGCCTGCCTCCAGATGCAGCAGCGGGGTGTGCAGCAGCTGCAC
CGGTACCTGGTGCACCGCGAGTCCGTGTCGTATCGCAGGGAAGGCTTCCG
GAACATGGGCAACACGTGCTACCTCAACGCCTGCCTCCAGGGACTGCTGT
CGCTCTCCGGCTTCGTCGGAGATCTCCAGCGGAAGTGCTGGGTGCTCGCC
ATGCTCAAGCCCCCCCCCCCGCCATCGGCGGGGCCGAATCCGACAACAGC
GGGACTGCTGTCGCTCTCCGGCTTCGTCGGAGATCTCCAGCGGAAGTGCT
GGGTGCTCGCCATGCTCAAGCCCCCCCCCCCGCCATCGGCGGGGCCGAAT
CCGACAACAGCG
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