mRNA_L-elsbetiae_contig10451.451.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10451.451.1
Unique NamemRNA_L-elsbetiae_contig10451.451.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10451.451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10451contigL-elsbetiae_contig10451:6393..6930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size538
Cds size450
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.7428918-CDS-L-elsbetiae_contig10451:6392..68421622815269.7428918-CDS-L-elsbetiae_contig10451:6392..6842Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10451 6393..6842 +
1691682807.7170837-CDS-L-elsbetiae_contig10451:6392..68421691682807.7170837-CDS-L-elsbetiae_contig10451:6392..6842Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10451 6393..6842 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.7552266-UTR-L-elsbetiae_contig10451:6842..69301622815269.7552266-UTR-L-elsbetiae_contig10451:6842..6930Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10451 6843..6930 +
1691682807.728503-UTR-L-elsbetiae_contig10451:6842..69301691682807.728503-UTR-L-elsbetiae_contig10451:6842..6930Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10451 6843..6930 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10451.451.1prot_L-elsbetiae_contig10451.451.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10451 6393..6842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10451.451.1

>prot_L-elsbetiae_contig10451.451.1 ID=prot_L-elsbetiae_contig10451.451.1|Name=mRNA_L-elsbetiae_contig10451.451.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=150bp
MRNTPGSIFTPPSGSGSRLSSPDEVAFSFRGASAAIEASAKSVGARRARL
LLPIIHGGTCWPHLLLFTSAIPSSLCSEQNSACWPHLLFFTSTIPSFLCS
EQNSAFALPSTPENGCLVQPCWPQLFFTLTTPSFLCAEQNSAFALPSTP*
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mRNA from alignment at L-elsbetiae_contig10451:6393..6930+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10451.451.1 ID=mRNA_L-elsbetiae_contig10451.451.1|Name=mRNA_L-elsbetiae_contig10451.451.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=538bp|location=Sequence derived from alignment at L-elsbetiae_contig10451:6393..6930+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGAAATACCCCCGGTTCCATCTTCACACCGCCGTCTGGCTCCGGAAG
TCGTTTGTCGTCCCCGGATGAAGTTGCTTTCTCGTTTCGTGGTGCTTCTG
CTGCAATTGAAGCCTCAGCCAAGTCGGTGGGAGCCCGGCGGGCCCGTTTG
TTGCTCCCCATAATCCATGGAGGAACTTGTTGGCCGCACCTCTTGCTCTT
CACGTCCGCCATCCCGTCCTCCTTGTGTTCAGAGCAGAACTCCGCCTGTT
GGCCGCACCTCTTGTTCTTCACCTCCACCATCCCGTCCTTCTTGTGTTCA
GAGCAGAACTCCGCCTTCGCGCTACCATCTACGCCAGAGAACGGCTGCTT
GGTGCAACCTTGTTGGCCGCAACTCTTCTTCACGCTCACCACCCCGTCCT
TCTTGTGTGCAGAGCAGAACTCCGCCTTCGCGCTACCATCCACGCCATAG
GACGGCTGATTGGTGCAACCTTGTTGGCCACATCTCTTGCTCTTCACGTC
CACCATCCCGTCCTTCTTGTGTGCAGAGCAGAACTCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10451:6393..6930+

>mRNA_L-elsbetiae_contig10451.451.1 ID=mRNA_L-elsbetiae_contig10451.451.1|Name=mRNA_L-elsbetiae_contig10451.451.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=900bp|location=Sequence derived from alignment at L-elsbetiae_contig10451:6393..6930+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGAAATACCCCCGGTTCCATCTTCACACCGCCGTCTGGCTCCGGAAG
TCGTTTGTCGTCCCCGGATGAAGTTGCTTTCTCGTTTCGTGGTGCTTCTG
CTGCAATTGAAGCCTCAGCCAAGTCGGTGGGAGCCCGGCGGGCCCGTTTG
TTGCTCCCCATAATCCATGGAGGAACTTGTTGGCCGCACCTCTTGCTCTT
CACGTCCGCCATCCCGTCCTCCTTGTGTTCAGAGCAGAACTCCGCCTGTT
GGCCGCACCTCTTGTTCTTCACCTCCACCATCCCGTCCTTCTTGTGTTCA
GAGCAGAACTCCGCCTTCGCGCTACCATCTACGCCAGAGAACGGCTGCTT
GGTGCAACCTTGTTGGCCGCAACTCTTCTTCACGCTCACCACCCCGTCCT
TCTTGTGTGCAGAGCAGAACTCCGCCTTCGCGCTACCATCCACGCCATAG
ATGCGAAATACCCCCGGTTCCATCTTCACACCGCCGTCTGGCTCCGGAAG
TCGTTTGTCGTCCCCGGATGAAGTTGCTTTCTCGTTTCGTGGTGCTTCTG
CTGCAATTGAAGCCTCAGCCAAGTCGGTGGGAGCCCGGCGGGCCCGTTTG
TTGCTCCCCATAATCCATGGAGGAACTTGTTGGCCGCACCTCTTGCTCTT
CACGTCCGCCATCCCGTCCTCCTTGTGTTCAGAGCAGAACTCCGCCTGTT
GGCCGCACCTCTTGTTCTTCACCTCCACCATCCCGTCCTTCTTGTGTTCA
GAGCAGAACTCCGCCTTCGCGCTACCATCTACGCCAGAGAACGGCTGCTT
GGTGCAACCTTGTTGGCCGCAACTCTTCTTCACGCTCACCACCCCGTCCT
TCTTGTGTGCAGAGCAGAACTCCGCCTTCGCGCTACCATCCACGCCATAG
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