mRNA_L-elsbetiae_contig10446.442.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10446.442.1
Unique NamemRNA_L-elsbetiae_contig10446.442.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10446.442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10446contigL-elsbetiae_contig10446:5486..5745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size260
Cds size255
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.2692804-UTR-L-elsbetiae_contig10446:5485..54901622815269.2692804-UTR-L-elsbetiae_contig10446:5485..5490Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10446 5486..5490 +
1691682807.4909296-UTR-L-elsbetiae_contig10446:5485..54901691682807.4909296-UTR-L-elsbetiae_contig10446:5485..5490Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10446 5486..5490 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.2785313-CDS-L-elsbetiae_contig10446:5490..57451622815269.2785313-CDS-L-elsbetiae_contig10446:5490..5745Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10446 5491..5745 +
1691682807.5033486-CDS-L-elsbetiae_contig10446:5490..57451691682807.5033486-CDS-L-elsbetiae_contig10446:5490..5745Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10446 5491..5745 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10446.442.1prot_L-elsbetiae_contig10446.442.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10446 5491..5745 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10446.442.1

>prot_L-elsbetiae_contig10446.442.1 ID=prot_L-elsbetiae_contig10446.442.1|Name=mRNA_L-elsbetiae_contig10446.442.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
MSESRSPVPQELDPFASTQEIGRATTNGGGRNNEFDETHVVSASASATVP
SRAPMAGDGSTDPQRARRSVAGGGGKQPQGGSAGG
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mRNA from alignment at L-elsbetiae_contig10446:5486..5745+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10446.442.1 ID=mRNA_L-elsbetiae_contig10446.442.1|Name=mRNA_L-elsbetiae_contig10446.442.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=260bp|location=Sequence derived from alignment at L-elsbetiae_contig10446:5486..5745+ (Laminarionema elsbetiae ELsaHSoW15)
CCCAAATGAGTGAGAGCCGCTCGCCTGTTCCGCAGGAACTCGACCCTTTC
GCCAGTACACAAGAAATCGGTCGAGCAACGACGAACGGCGGAGGTAGAAA
CAATGAGTTCGACGAGACACATGTTGTCAGTGCGTCGGCTAGTGCAACGG
TACCATCCCGTGCGCCTATGGCCGGCGACGGGAGTACCGATCCCCAGAGG
GCTAGACGGAGCGTCGCGGGAGGAGGTGGGAAGCAACCTCAAGGCGGGAG
TGCCGGCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10446:5486..5745+

>mRNA_L-elsbetiae_contig10446.442.1 ID=mRNA_L-elsbetiae_contig10446.442.1|Name=mRNA_L-elsbetiae_contig10446.442.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig10446:5486..5745+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGTGAGAGCCGCTCGCCTGTTCCGCAGGAACTCGACCCTTTCGCCAG
TACACAAGAAATCGGTCGAGCAACGACGAACGGCGGAGGTAGAAACAATG
AGTTCGACGAGACACATGTTGTCAGTGCGTCGGCTAGTGCAACGGTACCA
TCCCGTGCGCCTATGGCCGGCGACGGGAGTACCGATCCCCAGAGGGCTAG
ACGGAGCGTCGCGGGAGGAGGTGGGAAGCAACCTCAAGGCGGGAGTGCCG
GCGGCATGAGTGAGAGCCGCTCGCCTGTTCCGCAGGAACTCGACCCTTTC
GCCAGTACACAAGAAATCGGTCGAGCAACGACGAACGGCGGAGGTAGAAA
CAATGAGTTCGACGAGACACATGTTGTCAGTGCGTCGGCTAGTGCAACGG
TACCATCCCGTGCGCCTATGGCCGGCGACGGGAGTACCGATCCCCAGAGG
GCTAGACGGAGCGTCGCGGGAGGAGGTGGGAAGCAACCTCAAGGCGGGAG
TGCCGGCGGC
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