mRNA_L-elsbetiae_contig10446.441.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10446.441.1
Unique NamemRNA_L-elsbetiae_contig10446.441.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10446.441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10446contigL-elsbetiae_contig10446:4652..5172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size521
Cds size321
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.1563923-CDS-L-elsbetiae_contig10446:4651..49721622815269.1563923-CDS-L-elsbetiae_contig10446:4651..4972Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10446 4652..4972 +
1691682807.4278493-CDS-L-elsbetiae_contig10446:4651..49721691682807.4278493-CDS-L-elsbetiae_contig10446:4651..4972Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10446 4652..4972 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.174431-UTR-L-elsbetiae_contig10446:4972..51721622815269.174431-UTR-L-elsbetiae_contig10446:4972..5172Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10446 4973..5172 +
1691682807.4367094-UTR-L-elsbetiae_contig10446:4972..51721691682807.4367094-UTR-L-elsbetiae_contig10446:4972..5172Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10446 4973..5172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10446.441.1prot_L-elsbetiae_contig10446.441.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10446 4652..4972 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10446.441.1

>prot_L-elsbetiae_contig10446.441.1 ID=prot_L-elsbetiae_contig10446.441.1|Name=mRNA_L-elsbetiae_contig10446.441.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MARQHARSSLSSVGGIALLALSFVVLSAPSVGGACLPTSVVTSTIGHTRE
HSTRVKDSRVRYVGCSLSERECSERADTILRMRWVASKGNCLLLLFQCYA
LMCLGI*
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mRNA from alignment at L-elsbetiae_contig10446:4652..5172+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10446.441.1 ID=mRNA_L-elsbetiae_contig10446.441.1|Name=mRNA_L-elsbetiae_contig10446.441.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=521bp|location=Sequence derived from alignment at L-elsbetiae_contig10446:4652..5172+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTCGACAGCACGCCAGGAGCAGCTTATCCTCCGTGGGCGGCATTGC
CCTGCTGGCATTGTCCTTTGTGGTTCTTTCTGCTCCCTCTGTCGGCGGCG
CGTGCTTGCCCACGTCGGTTGTTACTTCCACCATTGGTCACACCCGAGAG
CACAGCACACGCGTGAAAGACTCTCGGGTCCGGTACGTTGGATGTTCTCT
CAGCGAGAGGGAATGTTCTGAACGGGCAGACACAATACTCCGTATGCGGT
GGGTTGCTTCGAAGGGCAACTGCCTTCTCCTCCTTTTCCAGTGCTATGCA
CTCATGTGCCTGGGCATCTAGAGGGGCTTACCCGCTCACCCGTAACCCAA
CCGATGCCACACACCCTTTGTTGCACTCACAACAGGAGCAAGAGATCAGG
CGGAGCGTGCCGGGACAGGCGGCGGGTTGATGTTCCTTCGTGATGAACTC
CGCTGTTGCGCGCCAACTCCTTCCTATTCTCGTCAACACACACCTCTCCC
CTATCTCCTGCTCTAGGCCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10446:4652..5172+

>mRNA_L-elsbetiae_contig10446.441.1 ID=mRNA_L-elsbetiae_contig10446.441.1|Name=mRNA_L-elsbetiae_contig10446.441.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig10446:4652..5172+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTCGACAGCACGCCAGGAGCAGCTTATCCTCCGTGGGCGGCATTGC
CCTGCTGGCATTGTCCTTTGTGGTTCTTTCTGCTCCCTCTGTCGGCGGCG
CGTGCTTGCCCACGTCGGTTGTTACTTCCACCATTGGTCACACCCGAGAG
CACAGCACACGCGTGAAAGACTCTCGGGTCCGGTACGTTGGATGTTCTCT
CAGCGAGAGGGAATGTTCTGAACGGGCAGACACAATACTCCGTATGCGGT
GGGTTGCTTCGAAGGGCAACTGCCTTCTCCTCCTTTTCCAGTGCTATGCA
CTCATGTGCCTGGGCATCTAGATGGCTCGACAGCACGCCAGGAGCAGCTT
ATCCTCCGTGGGCGGCATTGCCCTGCTGGCATTGTCCTTTGTGGTTCTTT
CTGCTCCCTCTGTCGGCGGCGCGTGCTTGCCCACGTCGGTTGTTACTTCC
ACCATTGGTCACACCCGAGAGCACAGCACACGCGTGAAAGACTCTCGGGT
CCGGTACGTTGGATGTTCTCTCAGCGAGAGGGAATGTTCTGAACGGGCAG
ACACAATACTCCGTATGCGGTGGGTTGCTTCGAAGGGCAACTGCCTTCTC
CTCCTTTTCCAGTGCTATGCACTCATGTGCCTGGGCATCTAG
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