mRNA_L-elsbetiae_contig10442.438.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10442.438.1
Unique NamemRNA_L-elsbetiae_contig10442.438.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10442.438.1 vs. uniprot
Match: D8LL26_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL26_ECTSI)

HSP 1 Score: 474 bits (1219), Expect = 3.830e-162
Identity = 245/312 (78.53%), Postives = 273/312 (87.50%), Query Frame = 2 
Query:  296 NEVG-LQLESLPDTTGIRAPAGIYEFGAQDFRFDVERDDVDLFPAPDMHER-RVKTRKPMKLPELGHALTAWKGWWEQEFLFRGFGIGFVKPLFRGLLLRPDFGLGVRLPLTLHFRSWESKEALPSVALSFFVLWPPAVQVSQAMSYPAESLQEWVTTAARKIAVPSKEISQVRRRKESVQRLGVSIGVRYSATYGRQYWLAPYFFLLPGVRILWTLYQSMMTMVLSSLALMQRSDANGLGRED-RKEETQALWVVALRSWAAAKTSGLGYSLYYSGQRLGGAAYVNFMPFFLPFSFNRFTSEEASDTEGLG 1222
            NEVG LQLES PDTTGI  PAG YEFGA+DFRFD+ R+DVDLFPAPD++ER   + RKP+KLPELG+ALTA KGWW +EF FRGFGIGFVKP+FRGLLLRPD G+GVRLP+TLHFRSWES+EALPSVALS FVLWPPAVQVSQAMSYPAE LQE  TTAARKI VPSKE  QVRRRKE+VQRLGVSIGVRYS+TYG Q+WL+PYFFLLPGVR+LWTLYQSMMT++LSSLALMQRSDA+GL RE+ R E  +ALWVVALRSWAA KTSGLGY+LY SG RLGGAAYVNFMPFFLP +F   TS ++S  +  G
Sbjct:    8 NEVGGLQLESPPDTTGIAFPAGTYEFGAEDFRFDLGREDVDLFPAPDIYERGSYRARKPLKLPELGNALTACKGWWAEEFTFRGFGIGFVKPVFRGLLLRPDLGVGVRLPVTLHFRSWESREALPSVALSLFVLWPPAVQVSQAMSYPAELLQELATTAARKIVVPSKEAIQVRRRKEAVQRLGVSIGVRYSSTYGFQWWLSPYFFLLPGVRVLWTLYQSMMTLLLSSLALMQRSDASGLDRENGRAENQEALWVVALRSWAAEKTSGLGYALYLSGNRLGGAAYVNFMPFFLP-TFRAATSRDSSGVKDPG 318
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BLAST of mRNA_L-elsbetiae_contig10442.438.1 vs. uniprot
Match: A0A835Z8S6_9STRA (Peroxin/Ferlin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8S6_9STRA)

HSP 1 Score: 134 bits (338), Expect = 3.330e-30
Identity = 83/224 (37.05%), Postives = 114/224 (50.89%), Query Frame = 2 
Query:  482 LGHALTAWKGWWEQEFLFRGFGIGFVKPLFRGLLLR---PDFGLGVRLPLTLHFRSWESKEALPSVALSFFVLWPPAVQVSQAMSYPAESLQEWVT-TAARKIAVPSKEISQVRRR---------------------KESVQRLGVSIGVRYSATYGRQYWLAPYFFLLPGVRILWTLYQSMMTMVLSS---LALMQRSDANGLGREDRKEETQALWVVALRSW 1069
            LG AL  W   WE+EF+FRGFG+G VKPLF G +LR    D G+G+R+P+T HF  WE++  LP ++ S F  WP  VQ S  MS  +  LQ+W        +A+     ++ RRR                     + +V R+GV++ VR SA YG Q W +PY FLLPGVRI+     S + ++L +    A ++   A    R        ALW    R W
Sbjct:  307 LGSALAQW---WEREFVFRGFGVGLVKPLFAGYMLRGNLSDMGVGLRMPITSHFNCWEARRDLPLISSSLFFFWPLKVQTSFTMSVASAQLQDWAGGVKGLWLALADSFTAEGRRRAKIWLSGSGEGGAFAKKPVQRRTTVTRVGVTVSVRLSAEYGLQVWASPYIFLLPGVRIITDALSSALALILGTRDTAAAVEARRAQEAARLASATYAVALWASLCRCW 527
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10442.438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LL26_ECTSI3.830e-16278.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z8S6_9STRA3.330e-3037.05Peroxin/Ferlin domain-containing protein n=1 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10442contigL-elsbetiae_contig10442:528..2447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_000860.1
Exons3
Model size1552
Cds size945
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10442.438.1prot_L-elsbetiae_contig10442.438.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10442 702..2014 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.025169-UTR-L-elsbetiae_contig10442:527..7011622815269.025169-UTR-L-elsbetiae_contig10442:527..701Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10442 528..701 -
1691682807.3338163-UTR-L-elsbetiae_contig10442:527..7011691682807.3338163-UTR-L-elsbetiae_contig10442:527..701Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10442 528..701 -
1622815269.0662496-UTR-L-elsbetiae_contig10442:2014..24471622815269.0662496-UTR-L-elsbetiae_contig10442:2014..2447Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10442 2015..2447 -
1691682807.3805006-UTR-L-elsbetiae_contig10442:2014..24471691682807.3805006-UTR-L-elsbetiae_contig10442:2014..2447Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10442 2015..2447 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.0357544-CDS-L-elsbetiae_contig10442:701..10891622815269.0357544-CDS-L-elsbetiae_contig10442:701..1089Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10442 702..1089 -
1691682807.3457391-CDS-L-elsbetiae_contig10442:701..10891691682807.3457391-CDS-L-elsbetiae_contig10442:701..1089Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10442 702..1089 -
1622815269.045286-CDS-L-elsbetiae_contig10442:1337..15221622815269.045286-CDS-L-elsbetiae_contig10442:1337..1522Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10442 1338..1522 -
1691682807.3572793-CDS-L-elsbetiae_contig10442:1337..15221691682807.3572793-CDS-L-elsbetiae_contig10442:1337..1522Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10442 1338..1522 -
1622815269.0552285-CDS-L-elsbetiae_contig10442:1642..20141622815269.0552285-CDS-L-elsbetiae_contig10442:1642..2014Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10442 1643..2014 -
1691682807.370551-CDS-L-elsbetiae_contig10442:1642..20141691682807.370551-CDS-L-elsbetiae_contig10442:1642..2014Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10442 1643..2014 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10442.438.1

>prot_L-elsbetiae_contig10442.438.1 ID=prot_L-elsbetiae_contig10442.438.1|Name=mRNA_L-elsbetiae_contig10442.438.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=315bp
MHERRVKTRKPMKLPELGHALTAWKGWWEQEFLFRGFGIGFVKPLFRGLL
LRPDFGLGVRLPLTLHFRSWESKEALPSVALSFFVLWPPAVQVSQAMSYP
AESLQEWVTTAARKIAVPSKEISQVRRRKESVQRLGVSIGVRYSATYGRQ
YWLAPYFFLLPGVRILWTLYQSMMTMVLSSLALMQRSDANGLGREDRKEE
TQALWVVALRSWAAAKTSGLGYSLYYSGQRLGGAAYVNFMPFFLPFSFNR
FTSEEASDTEGLGEVPQPAEPEPQPATSNAQDAVKQGIEGEMEGEMERND
GGQRTTPLLQACST*
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mRNA from alignment at L-elsbetiae_contig10442:528..2447-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10442.438.1 ID=mRNA_L-elsbetiae_contig10442.438.1|Name=mRNA_L-elsbetiae_contig10442.438.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1920bp|location=Sequence derived from alignment at L-elsbetiae_contig10442:528..2447- (Laminarionema elsbetiae ELsaHSoW15)
GGAGGTGGGTTCGCGCCATGCAGCAACAGCAGGTGCAACACCAGCAGGTG
AAACACTTGGTACTTTTGCCAGTCCTCTAACCGCTGTGTTTATGTGTTTC
GCCTGCGGGTGAGCTGAAACAGTATCTAGTGTCCCTTGTTGCCCTACATA
GTTAAATGCTCCTAGTTTTTCCATCCAAAAGTACCATGTTCAACGACAGC
AGTCGATCTCCAACCTGAGTATCGTTATTTTCGGTGAAATTGTTTGAAGA
CATACTAACCTTCCTCACCGCCCAATTTTCGAGTTCCAGGAATCCAACGA
GGTTGGTCTTCAGCTAGAGAGCCTACCGGACACCACAGGGATTAGGGCTC
CAGCCGGAATTTACGAATTTGGAGCGCAAGACTTCCGGTTTGACGTGGAA
AGAGACGACGTCGACCTCTTCCCCGCACCAGATATGCACGAGCGCCGAGT
CAAAACTAGGAAACCAATGAAACTTCCTGAGCTCGGACACGCTTTGACAG
CATGGAAGGGCTGGTGGGAACAAGAGTTTCTTTTCCGAGGCTTTGGCATT
GGCTTCGTGAAGCCTTTGTTCAGAGGTCTCCTTCTTCGGCCTGACTTCGG
ATTGGGCGTCCGCCTACCGCTGACATTGCACTTCAGATCATGGGAGAGCA
AGGAGGCGCTCCCTTCTGTTGCCCTGTCCTTTTTCGTGCTGTGGCCGCCT
GCCGTACAAGTATCACAGGCGATGTCGTACCCGGCAGAATCTCTCCAGGA
ATGGGTCACCACCGCGGCACGGAAGATTGCGGTTCCGTCAAAGGAAATAT
CGCAGGTTAGAGATGACAAAAAAGCTCATGCTCGTCTGATCGACCTGTAT
AGGGTAACATTCAGAACCAAGTGTCGGACGTAGCTAAATTATGAGTGCCT
TTTCTCCTCTCTATTTTCAACACAGGTGCGGCGTCGAAAGGAATCTGTTC
AGAGGCTGGGGGTTAGCATCGGGGTTCGCTACTCCGCAACTTACGGAAGG
CAGTACTGGCTGGCTCCCTATTTCTTCCTCTTGCCAGGAGTGCGAATCTT
GTGGACTCTCTATCAGTCAATGATGACGATGGTGTTATCCAGCTTGGCTT
TGATGCAGAGGTGCGCTCCGCGGACGGATGAGCACCGCGTTACCCCATTA
GGATTAACTAGCGGCCCTTTCGAGAGAACTGCCGTGTCGCTTGCTGTGTA
GGAGCTTAGAATCAAGCCAGGGATTGGTACATCTTGTGTACCGCGTTAGG
GTTGCTGAGCTCTCATCTTTTGGGCGCCGAGGTATTGAAAAAAATTGCCC
CCTTCCAGCTGAACTAAGTTGAGCGACTTGGATACATAAATTTTCCTCGC
TCGTATAGGTCGGATGCCAACGGGCTGGGCAGAGAAGACCGCAAAGAGGA
AACGCAGGCGCTTTGGGTGGTGGCCCTGCGGAGCTGGGCAGCGGCTAAAA
CATCAGGACTGGGCTATTCTTTGTACTACTCTGGCCAGCGCTTGGGGGGA
GCTGCGTACGTAAACTTTATGCCTTTCTTCCTTCCTTTCTCATTTAACCG
CTTCACGTCGGAGGAAGCGAGCGATACAGAGGGGCTAGGCGAAGTGCCCC
AGCCTGCGGAACCCGAACCACAACCAGCGACATCCAACGCACAAGATGCG
GTAAAACAAGGGATTGAAGGAGAGATGGAAGGAGAGATGGAGCGCAACGA
CGGTGGCCAGCGCACCACTCCCCTACTGCAAGCGTGCTCTACGTGACCAT
ATTAAGTTAGTGTACGTATGTATAAGTGTACATATGTATAAACAGGAGAG
CTTCGGCCAGCGGCTTATGCTATTTCACAGCAGCCCGATCGTCGTGCGCC
TGCGCGAACAAGTATATTCACCTGGGCCCTTTCAGCCCTTTCATGAAGAT
CCTGAAAAACAACGGTGTTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10442:528..2447-

>mRNA_L-elsbetiae_contig10442.438.1 ID=mRNA_L-elsbetiae_contig10442.438.1|Name=mRNA_L-elsbetiae_contig10442.438.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1890bp|location=Sequence derived from alignment at L-elsbetiae_contig10442:528..2447- (Laminarionema elsbetiae ELsaHSoW15)
ATGCACGAGCGCCGAGTCAAAACTAGGAAACCAATGAAACTTCCTGAGCT
CGGACACGCTTTGACAGCATGGAAGGGCTGGTGGGAACAAGAGTTTCTTT
TCCGAGGCTTTGGCATTGGCTTCGTGAAGCCTTTGTTCAGAGGTCTCCTT
CTTCGGCCTGACTTCGGATTGGGCGTCCGCCTACCGCTGACATTGCACTT
CAGATCATGGGAGAGCAAGGAGGCGCTCCCTTCTGTTGCCCTGTCCTTTT
TCGTGCTGTGGCCGCCTGCCGTACAAGTATCACAGGCGATGTCGTACCCG
GCAGAATCTCTCCAGGAATGGGTCACCACCGCGGCACGGAAGATTGCGGT
TCCGTCAAAGGAAATATCGCAGATGCACGAGCGCCGAGTCAAAACTAGGA
AACCAATGAAACTTCCTGAGCTCGGACACGCTTTGACAGCATGGAAGGGC
TGGTGGGAACAAGAGTTTCTTTTCCGAGGCTTTGGCATTGGCTTCGTGAA
GCCTTTGTTCAGAGGTCTCCTTCTTCGGCCTGACTTCGGATTGGGCGTCC
GCCTACCGCTGACATTGCACTTCAGATCATGGGAGAGCAAGGAGGCGCTC
CCTTCTGTTGCCCTGTCCTTTTTCGTGCTGTGGCCGCCTGCCGTACAAGT
ATCACAGGCGATGTCGTACCCGGCAGAATCTCTCCAGGAATGGGTCACCA
CCGCGGCACGGAAGATTGCGGTTCCGTCAAAGGAAATATCGCAGGTGCGG
CGTCGAAAGGAATCTGTTCAGAGGCTGGGGGTTAGCATCGGGGTTCGCTA
CTCCGCAACTTACGGAAGGCAGTACTGGCTGGCTCCCTATTTCTTCCTCT
TGCCAGGAGTGCGAATCTTGTGGACTCTCTATCAGTCAATGATGACGATG
GTGTTATCCAGCTTGGCTTTGATGCAGAGGTGCGGCGTCGAAAGGAATCT
GTTCAGAGGCTGGGGGTTAGCATCGGGGTTCGCTACTCCGCAACTTACGG
AAGGCAGTACTGGCTGGCTCCCTATTTCTTCCTCTTGCCAGGAGTGCGAA
TCTTGTGGACTCTCTATCAGTCAATGATGACGATGGTGTTATCCAGCTTG
GCTTTGATGCAGAGGTCGGATGCCAACGGGCTGGGCAGAGAAGACCGCAA
AGAGGAAACGCAGGCGCTTTGGGTGGTGGCCCTGCGGAGCTGGGCAGCGG
CTAAAACATCAGGACTGGGCTATTCTTTGTACTACTCTGGCCAGCGCTTG
GGGGGAGCTGCGTACGTAAACTTTATGCCTTTCTTCCTTCCTTTCTCATT
TAACCGCTTCACGTCGGAGGAAGCGAGCGATACAGAGGGGCTAGGCGAAG
TGCCCCAGCCTGCGGAACCCGAACCACAACCAGCGACATCCAACGCACAA
GATGCGGTAAAACAAGGGATTGAAGGAGAGATGGAAGGAGAGATGGAGCG
CAACGACGGTGGCCAGCGCACCACTCCCCTACTGCAAGCGTGCTCTACGT
GAGTCGGATGCCAACGGGCTGGGCAGAGAAGACCGCAAAGAGGAAACGCA
GGCGCTTTGGGTGGTGGCCCTGCGGAGCTGGGCAGCGGCTAAAACATCAG
GACTGGGCTATTCTTTGTACTACTCTGGCCAGCGCTTGGGGGGAGCTGCG
TACGTAAACTTTATGCCTTTCTTCCTTCCTTTCTCATTTAACCGCTTCAC
GTCGGAGGAAGCGAGCGATACAGAGGGGCTAGGCGAAGTGCCCCAGCCTG
CGGAACCCGAACCACAACCAGCGACATCCAACGCACAAGATGCGGTAAAA
CAAGGGATTGAAGGAGAGATGGAAGGAGAGATGGAGCGCAACGACGGTGG
CCAGCGCACCACTCCCCTACTGCAAGCGTGCTCTACGTGA
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