mRNA_L-elsbetiae_contig1044.437.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1044.437.1
Unique NamemRNA_L-elsbetiae_contig1044.437.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1044.437.1 vs. uniprot
Match: D7FZM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM0_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 5.550e-59
Identity = 91/143 (63.64%), Postives = 112/143 (78.32%), Query Frame = 1 
Query:    1 LSVPGTCSNGMPGFQDDQVCCQLNCGQCGGVGCGTIVGTAGSSDCCPSEILLSNQTCGGDVVPPCILPMTPAPTLAPAATPFXXRTPFVAGNANDFINDTSSAEPGVLQTPAGMLMPLATAAAAFLGALAISAQH----ARGG 417
            ++VP TCSNG+PG+QD Q CC +NCG CGG GCG++ GTAG+SDCCPS I+ S + CGGD+V PCI+P TPAPT APA T      PF+AGNANDFINDT++A+PG+L+ PA +++PLATA AAFLGALA  A H    ARGG
Sbjct:    1 MTVPSTCSNGLPGYQDGQACCLMNCGLCGGDGCGSVNGTAGASDCCPSTIINSARVCGGDIVAPCIIPATPAPTPAPALTLMPTPVPFLAGNANDFINDTNAADPGMLREPASLVLPLATATAAFLGALAFGAAHQHQAARGG 143
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BLAST of mRNA_L-elsbetiae_contig1044.437.1 vs. uniprot
Match: D7FZM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM1_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 2.320e-15
Identity = 41/79 (51.90%), Postives = 49/79 (62.03%), Query Frame = 1 
Query:    7 VPGTCSNGMPGFQDDQVCCQLNCGQCGGVGCGTIVGTAGSSDCCPSEILLSNQTCGGDVVPPCILP-MTPAPTLAPAAT 240
             P TCSNG+ G+QD  +CC   CG+CGG GCGTI GT GS +CCPS IL +   CG     PCI+   TPAP +    T
Sbjct:  371 APSTCSNGIAGYQDGAICCLEICGRCGGDGCGTIPGTGGSDNCCPSTILAAGVVCGEA---PCIIEGYTPAPAVVGGGT 446
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BLAST of mRNA_L-elsbetiae_contig1044.437.1 vs. uniprot
Match: A0A6H5JSA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA0_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.160e-14
Identity = 32/49 (65.31%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    7 VPGTCSNGMPGFQDDQVCCQLNCGQCGGVGCGTIVGTAGSSDCCPSEIL 153
             P TCSNG+PG+QD  +CC   CG+CGG GCGTI GT GS +CCPS+IL
Sbjct:   85 APSTCSNGIPGYQDGVICCLEICGRCGGDGCGTIPGTGGSDNCCPSDIL 133
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BLAST of mRNA_L-elsbetiae_contig1044.437.1 vs. uniprot
Match: A0A6H5JSV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV2_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.880e-11
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:  259 PFVAGNANDFINDTSSA-EPGVLQTPAGMLMPLATAAAAFLGALAISAQH----ARGG 417
            PF+AGNANDF+N T+SA +PG+L+ P  +++PLATA AAFLGALA  A H    ARGG
Sbjct:    6 PFLAGNANDFVNSTTSAADPGMLRGPGSLVLPLATATAAFLGALAFGAAHQHQPARGG 63
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BLAST of mRNA_L-elsbetiae_contig1044.437.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 9.740e-7
Identity = 27/62 (43.55%), Postives = 33/62 (53.23%), Query Frame = 1 
Query:   16 TCSNGMPGFQDDQVCCQLNCGQCGGVGCGTIVGTAGSSDCCPSEILLSNQTCGGDVVPPCIL 201
            TCSNG+ G +   VCC + CG CGG GCG+  G     DCC S I   N  C      PC++
Sbjct:   23 TCSNGLSGLEKGGVCCPVECGTCGGTGCGSRPGLT-KYDCCTSTIKEDNHLCSVTKEAPCVI 83
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BLAST of mRNA_L-elsbetiae_contig1044.437.1 vs. uniprot
Match: D8LG71_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG71_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 4.890e-5
Identity = 30/66 (45.45%), Postives = 37/66 (56.06%), Query Frame = 1 
Query:   16 TCSNGMPGFQDDQ--VCCQLNCGQCGGVGCGTIVGTAG--SSDCCPSEILLSNQTCGGDVVPPCIL 201
            TC+ G+ G +     VCC L CG CGGVGC T   T+   ++DCC +EI  S   C    V PCIL
Sbjct:   24 TCAGGISGVESTSLDVCCTLECGTCGGVGC-TPANTSSLTANDCCATEISESGVMCSDTGVAPCIL 88
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1044.437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FZM0_ECTSI5.550e-5963.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZM1_ECTSI2.320e-1551.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSA0_9PHAE1.160e-1465.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSV2_9PHAE1.880e-1162.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNF5_9PHAE9.740e-743.55MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D8LG71_ECTSI4.890e-545.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1044contigL-elsbetiae_contig1044:6376..8836 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_003620.1
Exons3
Model size417
Cds size387
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1044.437.1prot_L-elsbetiae_contig1044.437.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1044 6406..8836 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815268.8156173-UTR-L-elsbetiae_contig1044:6375..64051622815268.8156173-UTR-L-elsbetiae_contig1044:6375..6405Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1044 6376..6405 +
1691682807.3011732-UTR-L-elsbetiae_contig1044:6375..64051691682807.3011732-UTR-L-elsbetiae_contig1044:6375..6405Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1044 6376..6405 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815268.828615-CDS-L-elsbetiae_contig1044:6405..64411622815268.828615-CDS-L-elsbetiae_contig1044:6405..6441Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1044 6406..6441 +
1691682807.3097868-CDS-L-elsbetiae_contig1044:6405..64411691682807.3097868-CDS-L-elsbetiae_contig1044:6405..6441Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1044 6406..6441 +
1622815268.8415966-CDS-L-elsbetiae_contig1044:7837..79761622815268.8415966-CDS-L-elsbetiae_contig1044:7837..7976Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1044 7838..7976 +
1691682807.317718-CDS-L-elsbetiae_contig1044:7837..79761691682807.317718-CDS-L-elsbetiae_contig1044:7837..7976Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1044 7838..7976 +
1622815268.9195416-CDS-L-elsbetiae_contig1044:8624..88361622815268.9195416-CDS-L-elsbetiae_contig1044:8624..8836Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1044 8625..8836 +
1691682807.3256428-CDS-L-elsbetiae_contig1044:8624..88361691682807.3256428-CDS-L-elsbetiae_contig1044:8624..8836Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1044 8625..8836 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1044.437.1

>prot_L-elsbetiae_contig1044.437.1 ID=prot_L-elsbetiae_contig1044.437.1|Name=mRNA_L-elsbetiae_contig1044.437.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=129bp
MPGFQDDQVCCQLNCGQCGGVGCGTIVGTAGSSDCCPSEILLSNQTCGGD
VVPPCILPMTPAPTLAPAATPFPTRTPFVAGNANDFINDTSSAEPGVLQT
PAGMLMPLATAAAAFLGALAISAQHARGG
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mRNA from alignment at L-elsbetiae_contig1044:6376..8836+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1044.437.1 ID=mRNA_L-elsbetiae_contig1044.437.1|Name=mRNA_L-elsbetiae_contig1044.437.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2461bp|location=Sequence derived from alignment at L-elsbetiae_contig1044:6376..8836+ (Laminarionema elsbetiae ELsaHSoW15)
CTTTCAGTGCCGGGCACGTGCAGCAACGGTATGCCCGGGTTCCAGGATGA
CCAAGTTTGCTGCCAGGTGGGTGCTGCTGTCGGTTGTTTTTTCATGCTAT
TATGCCATTTCGGGAAAAAGTAGCTGCCACTTGACACGCTCATGCCGGAC
TGCGTGCCTTGCTGCTGCTGCTGCTGCTAGATACCGCTGCTGCTTTACCA
TCTCTCGTCAGACCCCTCCCCCCCGCTCTCAATACAGAGACCTCTCACAA
CTGACTGCATAAAACAGTGTTATTTTAACTAAATTTTAAGGGGGCGCATG
TGCGGGAGGTTTTTAAGAAGGCACCTTCCGTCACGGCCTAAAGGCACCGG
GCCTCAGTATACCCCACGCACCGAGGAGCCGATATCTCAGCTTGCAGGAA
GTGATCCAAAACAAAACTTCAAGGCTGCGCAGTAGAGATGTGTGGCTACA
GAGCGGGCCAAAAATCTAGTTGGTAGCTCTTGCACTGCATTTAGAGGCGC
CATCGCAAAAAAATGATAGGGAAGAGAGAGGGAGAGGCGAAAAAAGAGAG
CCAGCTGCGAGACAGACGAGCACGATTCCTATACAAACGCAGCTTTTTGG
TCCCCGAAGAGGTTCATCGTAAGACCGCCCACGTTGGCAAGAGGAGGGTC
TAAGGTGTGCAGAGCACCCGCTGAAATGAGCTTACTCACTGCGCTGCAAT
TATACGAGCTGCTGCCGTCTGCTGCTACTGGCCTGGCCGAGGGCACCAAC
GTGTGCGGGAAGGCAGCTCTGATTCGACACTCACAGAGCGATTCTGAGTT
TAACATCTGCACCGGCACTAGCTATGAGCAGCATACCGCTCCCCCTCTAG
TTTGTTTGGTCTGGGAAGAGAGCGGGGGTTTTTGATGGTGGGGCCTTTAA
TGCGCGTGCCTTTCGTCTGCGAGTCCCCGACGAACTTGTGATCGGTGTAA
ATCATCCCCACGCCGCGGCTAGAGCATCGATTCGCTTCGTTCTTTTTCCT
ACCCCCTCGAGAAGTACAAGAGCTACAGGCCTGTTCATTCCCCACCACCA
ACACGGCACTCTGCGGCGAGAACTCGGAAGTGTTTACTAGGAGCGCAACA
AGTGCCTCCTTAAAATTGAATCCAAATAACACTGAAAAAAGCCGTGCCCA
CGGCAGTGTTCAGGAATGTTGCCCCCACACGGCAGACTTTGCTCATCTTC
GCTGTCTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCGNNNNNNNN
NNAAGCCGCGCCCCCGGCGCTGTGCGGGGCGGGCGCCCCCCCCCGGGCGC
CCTCTCCCCCCTCCGCCCCCGCGCCCCCCCCCCCCCCCCGCCGCCTGTCC
TCCCACTCCCCTCTCCGACTTCCCCCCCCCCTCATCTCGAACGATACCCC
GGGTGCGTGCAGTTGAACTGCGGCCAATGCGGGGGTGTCGGGTGCGGTAC
GATCGTCGGCACTGCCGGGTCTTCGGACTGCTGCCCGTCGGAGATCCTCC
TGTCCAACCAGACCTGCGGCGGCGACGTTGTGCCCCCGTGTATCCTCCCC
AGTGAGTGCATACATATGTGGGTGTCTCGGCTCACACACCAGGCTAGGTT
GGTGTGCCGGGTCTATGCCTAGGTGGCTGTACCGAGCTACTGGTTTTTAT
AAGACTTGACCCCAGGGCTGGTGTATATGCGTGCTGCGCGCTGGGCCCTC
GCAGCTGTCCGCTGCCTTTCGCTTCGTCGTTCGTGTATTGCCGGTCGGTC
GGTTCTCGCTGTTCTCGTTGCTCTCCCATGTACTCCAATTCATCAACGAT
TGCTATGTTATCATCCGGAAAAAGCTTTCGGTGTCAATGCACCATTGCTT
CGCTGTGTTTGATTTGGTTTTGTATGTGTGTTGTACGTTGTTTGTGATTC
TGGATGTTTGTTTTGCGCCTATTTACACAGCAGTAGTTTTACGAAAGTCT
CTCTTTTTATTAGGAGTATTTATTTTTGACACGGGGAGTTAACGTTGGGC
TGACCAAGTGACAGCCCGACTTTGCGTTTGCCTTTCTTGTGAGTCCGACT
TTTAGTTGATATTCCCTGCCCCAAACCAAACAATTAATTAATTAATGATT
AAATCAAATTAAACACACCATATAATAACACTTTGTTTTGCCTTTTTGCC
TTTACCTTTGTTCATCACTTTGTCTTTTTCCATTTTTTGGATGAAACAGT
GACTCCGGCCCCAACCCTAGCGCCGGCGGCGACACCGTTCCCCACCCGGA
CGCCCTTCGTGGCTGGCAACGCCAACGACTTCATCAACGACACCAGCAGC
GCCGAGCCGGGGGTGCTGCAGACGCCGGCCGGGATGCTGATGCCGCTCGC
GACCGCCGCGGCAGCGTTCCTCGGCGCTCTCGCCATCAGTGCGCAGCACG
CCCGGGGCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1044:6376..8836+

>mRNA_L-elsbetiae_contig1044.437.1 ID=mRNA_L-elsbetiae_contig1044.437.1|Name=mRNA_L-elsbetiae_contig1044.437.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=774bp|location=Sequence derived from alignment at L-elsbetiae_contig1044:6376..8836+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCGGGTTCCAGGATGACCAAGTTTGCTGCCAGATGCCCGGGTTCCA
GGATGACCAAGTTTGCTGCCAGTTGAACTGCGGCCAATGCGGGGGTGTCG
GGTGCGGTACGATCGTCGGCACTGCCGGGTCTTCGGACTGCTGCCCGTCG
GAGATCCTCCTGTCCAACCAGACCTGCGGCGGCGACGTTGTGCCCCCGTG
TATCCTCCCCATTGAACTGCGGCCAATGCGGGGGTGTCGGGTGCGGTACG
ATCGTCGGCACTGCCGGGTCTTCGGACTGCTGCCCGTCGGAGATCCTCCT
GTCCAACCAGACCTGCGGCGGCGACGTTGTGCCCCCGTGTATCCTCCCCA
TGACTCCGGCCCCAACCCTAGCGCCGGCGGCGACACCGTTCCCCACCCGG
ACGCCCTTCGTGGCTGGCAACGCCAACGACTTCATCAACGACACCAGCAG
CGCCGAGCCGGGGGTGCTGCAGACGCCGGCCGGGATGCTGATGCCGCTCG
CGACCGCCGCGGCAGCGTTCCTCGGCGCTCTCGCCATCAGTGCGCAGCAC
GCCCGGGGCGGCTGACTCCGGCCCCAACCCTAGCGCCGGCGGCGACACCG
TTCCCCACCCGGACGCCCTTCGTGGCTGGCAACGCCAACGACTTCATCAA
CGACACCAGCAGCGCCGAGCCGGGGGTGCTGCAGACGCCGGCCGGGATGC
TGATGCCGCTCGCGACCGCCGCGGCAGCGTTCCTCGGCGCTCTCGCCATC
AGTGCGCAGCACGCCCGGGGCGGC
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