mRNA_L-elsbetiae_contig10431.433.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10431.433.1
Unique NamemRNA_L-elsbetiae_contig10431.433.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10431.433.1 vs. uniprot
Match: D8LME4_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME4_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 1.540e-31
Identity = 62/79 (78.48%), Postives = 71/79 (89.87%), Query Frame = 1 
Query:    1 IEWPKRDPEVEEGVIRDPLKGRRTAQSVPVYARRLRLTVSEDEEAFFFSRNEEPLDHCRRDWVSKRRADESLARARASV 237
            IEWPKRDPEV +GV RDPL+GRRTAQSVPVYARRLRLTVSE+EEA+FF+ NEEPLDH RRDWVSKRRA+E+ +R + S 
Sbjct:  926 IEWPKRDPEVSQGVCRDPLEGRRTAQSVPVYARRLRLTVSENEEAYFFAPNEEPLDHHRRDWVSKRRAEEAASRRKLSA 1004
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BLAST of mRNA_L-elsbetiae_contig10431.433.1 vs. uniprot
Match: A0A6H5K463_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K463_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.560e-31
Identity = 63/79 (79.75%), Postives = 70/79 (88.61%), Query Frame = 1 
Query:    1 IEWPKRDPEVEEGVIRDPLKGRRTAQSVPVYARRLRLTVSEDEEAFFFSRNEEPLDHCRRDWVSKRRADESLARARASV 237
            IEWPKRDPEV +GV RDPL+GRRTAQSVPVYARRLRLTVSEDEEA+FF+ NEEPLD  RRDWVSKRRA+E+ AR + S 
Sbjct: 1917 IEWPKRDPEVSQGVCRDPLEGRRTAQSVPVYARRLRLTVSEDEEAYFFAPNEEPLDRNRRDWVSKRRAEEAAARRKLSA 1995
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10431.433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LME4_ECTSI1.540e-3178.48Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K463_9PHAE1.560e-3179.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10431contigL-elsbetiae_contig10431:3648..5983 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size289
Cds size288
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10431.433.1prot_L-elsbetiae_contig10431.433.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10431 3649..5983 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815268.5136225-CDS-L-elsbetiae_contig10431:3648..37021622815268.5136225-CDS-L-elsbetiae_contig10431:3648..3702Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10431 3649..3702 -
1691682807.1173663-CDS-L-elsbetiae_contig10431:3648..37021691682807.1173663-CDS-L-elsbetiae_contig10431:3648..3702Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10431 3649..3702 -
1622815268.5230036-CDS-L-elsbetiae_contig10431:4432..45881622815268.5230036-CDS-L-elsbetiae_contig10431:4432..4588Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10431 4433..4588 -
1691682807.128858-CDS-L-elsbetiae_contig10431:4432..45881691682807.128858-CDS-L-elsbetiae_contig10431:4432..4588Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10431 4433..4588 -
1622815268.5322952-CDS-L-elsbetiae_contig10431:5905..59831622815268.5322952-CDS-L-elsbetiae_contig10431:5905..5983Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10431 5906..5983 -
1691682807.136897-CDS-L-elsbetiae_contig10431:5905..59831691682807.136897-CDS-L-elsbetiae_contig10431:5905..5983Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10431 5906..5983 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10431.433.1

>prot_L-elsbetiae_contig10431.433.1 ID=prot_L-elsbetiae_contig10431.433.1|Name=mRNA_L-elsbetiae_contig10431.433.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
IEWPKRDPEVEEGVIRDPLKGRRTAQSVPVYARRLRLTVSEDEEAFFFSR
NEEPLDHCRRDWVSKRRADESLARARASVTNGGSGGRGTGGKTHDG
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mRNA from alignment at L-elsbetiae_contig10431:3648..5983-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10431.433.1 ID=mRNA_L-elsbetiae_contig10431.433.1|Name=mRNA_L-elsbetiae_contig10431.433.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2336bp|location=Sequence derived from alignment at L-elsbetiae_contig10431:3648..5983- (Laminarionema elsbetiae ELsaHSoW15)
ATCGAGTGGCCCAAGCGAGATCCGGAAGTGGAAGAAGGGGTGATCCGGGA
CCCCCTGAAGGGGCGCCGTACGGCTCAGGTGTGTGTGTGTGTGTGTGCGT
GTTGTTTTCTTCTTTTTTAAAGGAAAAACAGTCAATCAAAGATGGAACCT
AACCCCGGTAGTCTAGTTGGTACCCCCCAAGACCATCTAGCAGGCAGGTC
GTGAGTTTGAATCTCAGCGGAGGCGACTTTTTCTTGCGAAGTGAGTTTTT
TTCTCTCGCTTCCGTCCCTGTCAGTGGATAGCGCTCAGCGTGTGTACACA
AACTTCGACCTCACCGTCGACGAGGGAAAGGGACGGCTGAACCCTTCTCG
CGACAAAAATCCTAAGCAACCACCGCAGACGGGGAGAGTGGGGGCCTCGG
GGAAAAAGGAACCCTTCTGTGTGACCACGGCTCGGTATATACTGTGGCAA
GATGTCCTCGTGACAGGTAGCCCATCGAGCAATAGAAATAAATGTGAAGA
AGGAACAAAAAAAAAACTACACTGAGACGGGACTCCGTGAGATTCAATCT
TTATTTCCTCTTAGTCAGCGTTGATCACGCTGTCAGGTGTGGGTGTGGGT
GGGTGTGCTATTCTTGTGTTCGTTATTAGTTTTGTTTCTCACGTTAGCTC
TTTGGTCTAAAAGCACCGTGGGGCTGGTAAGGGAGGAGGAGGCCGTGGTC
ATACTCGACGTCGCTGAAGAAAACATTCAACAGTTATGGAGAGACATGCG
CGCCCTACGAGAGTGAGTAGTACACTGGGCCCCTAGATAGGTGGTGTGTG
TATGTGTGTTTGCGTGTTTGGTGATTGTTTTGTTCCCAGTATTGGATGCT
GGGACTCTTTTTTGTTTTTTTGGTTGTGGTGTTTTCTGGTGGGTCGGGCG
AATTTGTCAGGGTTAGGGGTCATATTTACACAGGTAGACTAGTCTTTTTT
TTTACCAAGTGGAGTCGGCAAGGCACCCAGAGGTGGAGTGGGGGAACGTC
CCGGGGTCCCTCTGGATGGGAGCTACACGGCTCAGGGGGGGGTGCTGACG
GGATCTCTCGTGGTCGTTGTCTTGTGTTGTCGTTGTGGCACAACCGGCGG
ACGATATTGTAGCCTTCTGTGCGCAGGTATTTTTTACAGATGTGCCGGTG
GATTTCGTATCGTGTGCGTGAGAGCTGATGAGGGTGCCCGCGATCAACGC
GTGTTTATTTCGTCCTTTCCCAGCCGAGGAAATATGGAAACATATATGTA
CCATATACATCACGCAGGATCCTCCTTACACGACACGACCCTCGCCCTCG
CCCCACCCTGACAAACCCTTTGTTCGCCCCGCGACCCTTCAATATGAATC
CAACCACAACACGGGAAAACAAAAAAAACACGCACACACACACAGTCCGT
GCCGGTGTACGCCCGACGGCTGCGGCTGACCGTCTCGGAAGACGAAGAGG
CGTTTTTCTTCTCGCGGAACGAAGAGCCGCTGGACCACTGCAGGAGGGAC
TGGGTCTCCAAGAGGCGTGCCGACGAGAGCCTCGCTCGGGCAAGAGCCTC
GGTAAGGAGAGGCCCGATGGCTACGTACGTCTCCTTCGACGTATCCCAAC
AGTACAGTAGTGATATTTTACAGAATTCGTCTGTTTCGATAAATATGTGC
CAAACCCTGTTTTTGGTGTTAAGTTGTGTTGTCGTGTGTTGTGTGTGGTG
TGTTTTTATTGTTTATTGTTCTCCCATTATTGGCTTATTCGTTGTCTGCC
CCACTGGCCCCCTTCCTCCACTACGACCAGCTAGACGACCCAACTGGGGT
CACACAGGACGGGGCGGGGTGGACCCCTCCTGCGGTGCCTGCCTGTGATG
TTTTTATCGCGAGCAGGGTGTGTGTGGTGTGTTGTGCTGGCTCGCGCAGT
GTGCTCTGCCTCCTGACCCGCGCGGGGACGTCCTCCTATGTACGTACGTG
CCGATCGCAACCTTGACCCGCGGTTTGCGGCGACCCCACCAAAAAGAAGA
GCTGGAGGGGGGGTTCGCCACAATGAAGGCAGCACCTCCCCCCCTGCGAG
GCCTGAACCCCAAGTACCGTTTTCGTGAGGGTAGACTCGGTTGTCCGCGT
GGCTCGTTGTTTTTGTTTGTAGGAGTGTCTGTGAGCACGTCCACCTCGGT
GGCTGTTTACGCCGTAAATCTGTGGCTGGCGGGACCGTGTCGTCCCTGCT
CTCGACAGCCGTGGCGTTTTTTGTACGCGGCAGATGAAGCTGACAAACTT
AAAATTGTGTAAATACGTACATACGTCATAGGTGACGAACGGCGGCAGCG
GAGGCAGAGGAACAGGAGGAAAGACCCACGACGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10431:3648..5983-

>mRNA_L-elsbetiae_contig10431.433.1 ID=mRNA_L-elsbetiae_contig10431.433.1|Name=mRNA_L-elsbetiae_contig10431.433.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig10431:3648..5983- (Laminarionema elsbetiae ELsaHSoW15)
ATCGAGTGGCCCAAGCGAGATCCGGAAGTGGAAGAAGGGGTGATCCGGGA
CCCCCTGAAGGGGCGCCGTACGGCTCAGATCGAGTGGCCCAAGCGAGATC
CGGAAGTGGAAGAAGGGGTGATCCGGGACCCCCTGAAGGGGCGCCGTACG
GCTCAGTCCGTGCCGGTGTACGCCCGACGGCTGCGGCTGACCGTCTCGGA
AGACGAAGAGGCGTTTTTCTTCTCGCGGAACGAAGAGCCGCTGGACCACT
GCAGGAGGGACTGGGTCTCCAAGAGGCGTGCCGACGAGAGCCTCGCTCGG
GCAAGAGCCTCGTCCGTGCCGGTGTACGCCCGACGGCTGCGGCTGACCGT
CTCGGAAGACGAAGAGGCGTTTTTCTTCTCGCGGAACGAAGAGCCGCTGG
ACCACTGCAGGAGGGACTGGGTCTCCAAGAGGCGTGCCGACGAGAGCCTC
GCTCGGGCAAGAGCCTCGGTGACGAACGGCGGCAGCGGAGGCAGAGGAAC
AGGAGGAAAGACCCACGACGGGGTGACGAACGGCGGCAGCGGAGGCAGAG
GAACAGGAGGAAAGACCCACGACGGG
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