mRNA_L-elsbetiae_contig104.408.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig104.408.1
Unique NamemRNA_L-elsbetiae_contig104.408.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig104.408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig104contigL-elsbetiae_contig104:38617..40069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size716
Cds size510
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig104.408.1prot_L-elsbetiae_contig104.408.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig104 38684..39641 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815265.453336-UTR-L-elsbetiae_contig104:38616..386831622815265.453336-UTR-L-elsbetiae_contig104:38616..38683Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig104 38617..38683 +
1691682805.2897184-UTR-L-elsbetiae_contig104:38616..386831691682805.2897184-UTR-L-elsbetiae_contig104:38616..38683Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig104 38617..38683 +
1622815265.4939556-UTR-L-elsbetiae_contig104:39641..396471622815265.4939556-UTR-L-elsbetiae_contig104:39641..39647Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig104 39642..39647 +
1691682805.3250701-UTR-L-elsbetiae_contig104:39641..396471691682805.3250701-UTR-L-elsbetiae_contig104:39641..39647Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig104 39642..39647 +
1622815265.510418-UTR-L-elsbetiae_contig104:39936..400691622815265.510418-UTR-L-elsbetiae_contig104:39936..40069Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig104 39937..40069 +
1691682805.3445284-UTR-L-elsbetiae_contig104:39936..400691691682805.3445284-UTR-L-elsbetiae_contig104:39936..40069Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig104 39937..40069 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815265.4661279-CDS-L-elsbetiae_contig104:38683..390881622815265.4661279-CDS-L-elsbetiae_contig104:38683..39088Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig104 38684..39088 +
1691682805.2998366-CDS-L-elsbetiae_contig104:38683..390881691682805.2998366-CDS-L-elsbetiae_contig104:38683..39088Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig104 38684..39088 +
1622815265.477316-CDS-L-elsbetiae_contig104:39536..396411622815265.477316-CDS-L-elsbetiae_contig104:39536..39641Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig104 39537..39641 +
1691682805.3155425-CDS-L-elsbetiae_contig104:39536..396411691682805.3155425-CDS-L-elsbetiae_contig104:39536..39641Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig104 39537..39641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig104.408.1

>prot_L-elsbetiae_contig104.408.1 ID=prot_L-elsbetiae_contig104.408.1|Name=mRNA_L-elsbetiae_contig104.408.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=170bp
MGSRLSRDSSWLMAPTSRGSAILAGLVPDRCASMPSMESFPEERVSNRAP
SMPSLESSLPDERMFRTASVSSSESPLPDERMPARDASVPSSEPPLSGGK
RSRDDARDGGGGSGGQERRRRRESPTRSFLSMSYRTSDEFFEDGFSENGF
FEDESSEDESSEDESSEDE*
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mRNA from alignment at L-elsbetiae_contig104:38617..40069+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig104.408.1 ID=mRNA_L-elsbetiae_contig104.408.1|Name=mRNA_L-elsbetiae_contig104.408.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1453bp|location=Sequence derived from alignment at L-elsbetiae_contig104:38617..40069+ (Laminarionema elsbetiae ELsaHSoW15)
CCTGCAGCCCCTGCTGTACACCGGGTCCTCTCTGGTGTACCCCGAGGTGT
CGCCTGGCGGGTCCGCTATGGGGTCCCGTCTGAGCCGAGATTCATCTTGG
TTGATGGCGCCGACCTCGAGGGGGTCCGCCATCCTCGCCGGGCTCGTGCC
CGACAGATGTGCATCGATGCCCTCAATGGAGTCATTCCCTGAAGAGCGCG
TGTCCAACAGAGCTCCATCGATGCCCTCGTTGGAGTCATCATTACCTGAC
GAGCGCATGTTCAGGACTGCATCAGTGTCCTCGTCGGAGTCGCCATTACC
CGACGAGCGCATGCCCGCCAGAGATGCATCAGTGCCCTCGTCGGAGCCAC
CATTATCCGGCGGGAAGAGAAGCCGTGACGACGCCCGGGACGGCGGCGGC
GGCAGCGGTGGTCAGGAGAGGAGACGACGACGAGAATCACCCACGCGAAG
CTTTTTGAGCATGTCGTATCGGGTAAGGGGAACATGGATGGATGTGCTTG
GGGTCTTGCTTTTGCGACGGTGGTGTTGTTGGATTTCCTTCCTGATGATG
ACGAGTAGCGCCACACCTGTAGTTCGACTTCTTCCAAGAGACAACAGCAG
CGAAGAGAGGGGGGATGGCTGGCCGCGTTGTGCAGAGGCCGTTTTTCGTT
TGGCGCGGTTTGACGCGGTTCGGATCCCATGGCCAAGCGCTCGGTTCTTC
CAACACGGCAACCCGGTGCTTGTTGGTATTTAGTCTGCACAGGCTTAGGC
TTGATCGAGGGAAACATAATTTTCCGATCATGACGAGCCAATGGGGCTCA
CCTCGCGACATGTAGTAGTCACGACCCTCTGTACGGGTCACGCGCGCATC
GTTGCTACTCGGCCAGCCCTCCCCCGCCACCCACACCTTCACTGTAAAAC
CTTGCTGTCACGCCCCGCAGACCTCGGACGAGTTCTTCGAGGATGGGTTC
TCCGAGAACGGATTCTTCGAGGACGAATCCTCCGAGGACGAATCCTCCGA
GGACGAATCCTCCGAGGACGAATAATCGCAGGTGATTTTTGTCGCTGGTG
GGCTGCCGGCGGGCTGTTGGTGACTGCGGTAGTTGGTTATGTGCGGCTGC
TGCTGTTGCTACATATTGTTGCATTACTGCATCCACCCTACGCGACCCAC
CCGGGGTACCAAGTCTACTCGGCGGGCAGCTCGACTTTATATCGTACTAT
TTAGAGCATGTATATTCGCAAGATGTGTTTCGGACGATCAACCACAGAAG
AACAAAGCAAAAGCAAAAGCAAACGCAAATCTTGACCCTATCCCCCTTTC
AACGCGCGCCCGGCTCCCAGGTGGCGATCGTTGCGAATGGCGGCGCCGGG
GACGGCTACTCCTCGGGCGTCTGTGATGTTCTCGGTTCTGCTTCTGCTGC
GGCGGCAACGGGGGGCGCGTCAGGGGCGCCGAAGAAGAGCTGAGGAAGCC
GGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig104:38617..40069+

>mRNA_L-elsbetiae_contig104.408.1 ID=mRNA_L-elsbetiae_contig104.408.1|Name=mRNA_L-elsbetiae_contig104.408.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1020bp|location=Sequence derived from alignment at L-elsbetiae_contig104:38617..40069+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGTCCCGTCTGAGCCGAGATTCATCTTGGTTGATGGCGCCGACCTC
GAGGGGGTCCGCCATCCTCGCCGGGCTCGTGCCCGACAGATGTGCATCGA
TGCCCTCAATGGAGTCATTCCCTGAAGAGCGCGTGTCCAACAGAGCTCCA
TCGATGCCCTCGTTGGAGTCATCATTACCTGACGAGCGCATGTTCAGGAC
TGCATCAGTGTCCTCGTCGGAGTCGCCATTACCCGACGAGCGCATGCCCG
CCAGAGATGCATCAGTGCCCTCGTCGGAGCCACCATTATCCGGCGGGAAG
AGAAGCCGTGACGACGCCCGGGACGGCGGCGGCGGCAGCGGTGGTCAGGA
GAGGAGACGACGACGAGAATCACCCACGCGAAGCTTTTTGAGCATGTCGT
ATCGGATGGGGTCCCGTCTGAGCCGAGATTCATCTTGGTTGATGGCGCCG
ACCTCGAGGGGGTCCGCCATCCTCGCCGGGCTCGTGCCCGACAGATGTGC
ATCGATGCCCTCAATGGAGTCATTCCCTGAAGAGCGCGTGTCCAACAGAG
CTCCATCGATGCCCTCGTTGGAGTCATCATTACCTGACGAGCGCATGTTC
AGGACTGCATCAGTGTCCTCGTCGGAGTCGCCATTACCCGACGAGCGCAT
GCCCGCCAGAGATGCATCAGTGCCCTCGTCGGAGCCACCATTATCCGGCG
GGAAGAGAAGCCGTGACGACGCCCGGGACGGCGGCGGCGGCAGCGGTGGT
CAGGAGAGGAGACGACGACGAGAATCACCCACGCGAAGCTTTTTGAGCAT
GTCGTATCGGACCTCGGACGAGTTCTTCGAGGATGGGTTCTCCGAGAACG
GATTCTTCGAGGACGAATCCTCCGAGGACGAATCCTCCGAGGACGAATCC
TCCGAGGACGAATAAACCTCGGACGAGTTCTTCGAGGATGGGTTCTCCGA
GAACGGATTCTTCGAGGACGAATCCTCCGAGGACGAATCCTCCGAGGACG
AATCCTCCGAGGACGAATAA
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