mRNA_L-elsbetiae_contig104.407.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig104.407.1
Unique NamemRNA_L-elsbetiae_contig104.407.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig104.407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig104contigL-elsbetiae_contig104:35735..36585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size365
Cds size363
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815265.4130583-CDS-L-elsbetiae_contig104:35734..359561622815265.4130583-CDS-L-elsbetiae_contig104:35734..35956Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig104 35735..35956 +
1691682805.2727926-CDS-L-elsbetiae_contig104:35734..359561691682805.2727926-CDS-L-elsbetiae_contig104:35734..35956Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig104 35735..35956 +
1622815265.4222255-CDS-L-elsbetiae_contig104:36444..365851622815265.4222255-CDS-L-elsbetiae_contig104:36444..36585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig104 36445..36585 +
1691682805.281221-CDS-L-elsbetiae_contig104:36444..365851691682805.281221-CDS-L-elsbetiae_contig104:36444..36585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig104 36445..36585 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig104.407.1prot_L-elsbetiae_contig104.407.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig104 35735..36585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig104.407.1

>prot_L-elsbetiae_contig104.407.1 ID=prot_L-elsbetiae_contig104.407.1|Name=mRNA_L-elsbetiae_contig104.407.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
MTRDESEPGRVGTWILAFFLAVLAVVTVASLGHCLQRVYPDKGGVLLEWL
DNSVLKEVGANNSSVASVMPSQKKEYGVGIKHDAASLARSAGGVLRRHGK
KGAMPRAGPMDSSDMRQRRRR
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mRNA from alignment at L-elsbetiae_contig104:35735..36585+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig104.407.1 ID=mRNA_L-elsbetiae_contig104.407.1|Name=mRNA_L-elsbetiae_contig104.407.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=851bp|location=Sequence derived from alignment at L-elsbetiae_contig104:35735..36585+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACCCGCGATGAGAGCGAACCCGGACGGGTCGGCACCTGGATCCTCGC
CTTTTTTCTGGCTGTCCTCGCGGTGGTCACCGTTGCGAGCTTGGGCCATT
GCCTCCAACGCGTCTACCCTGACAAGGGAGGCGTTCTCCTCGAGTGGCTG
GACAATTCCGTCCTCAAGGAAGTCGGCGCCAACAACAGCTCGGTTGCGTC
GGTCATGCCGAGCCAGAAGAAGGTGCCGCGCCGTGCTTGTTGTTTTCGGT
AGCTGGGTGGGCGCGAACTGAGCTCCTGGGTTAGGCGCCTCGGAAAGGGG
AGGAACGGGCGGGATCGCGTTTTGGTGCCCGCCTTATTGCTCTCGAGGTT
TAGATAGAGACTGCGTTTGGCGGTCGCCGAGATGCCTCAGTCGTCGTTGC
AAGAGCTTTCGTTGACTTCGCAACTCCTTGTTGGAAACGTAACCGACCAG
GGAAGGCCTTTCCCGCTCCTGGTGTATGGAGACCCACCCCCAAAAAGCAA
CGTACGCGCGCCTCGAAGTTCTCGCCAAAATTCGATGGAGTCGGCGTGTG
TATGTAGTCGGCCTTTGGTTTCGACTAGGGCACGGAACAATAAGCGGTAC
TGCAATCCCCCTATTCACCCTTCTGCGTGAACCAGACCGACACCACGGGC
CATCCTTGGGCCCCTCATTCTCTCGTCCGTGTTTGTGTTGATCGTCTACC
TTTCGTGAAGGAGTATGGAGTTGGCATCAAGCACGATGCCGCGTCACTAG
CCCGGAGCGCCGGAGGGGTACTGCGGCGGCACGGCAAGAAAGGGGCGATG
CCTCGAGCGGGACCGATGGACAGCTCCGACATGCGGCAGCGGCGGCGGCG
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig104:35735..36585+

>mRNA_L-elsbetiae_contig104.407.1 ID=mRNA_L-elsbetiae_contig104.407.1|Name=mRNA_L-elsbetiae_contig104.407.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig104:35735..36585+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACCCGCGATGAGAGCGAACCCGGACGGGTCGGCACCTGGATCCTCGC
CTTTTTTCTGGCTGTCCTCGCGGTGGTCACCGTTGCGAGCTTGGGCCATT
GCCTCCAACGCGTCTACCCTGACAAGGGAGGCGTTCTCCTCGAGTGGCTG
GACAATTCCGTCCTCAAGGAAGTCGGCGCCAACAACAGCTCGGTTGCGTC
GGTCATGCCGAGCCAGAAGAAGATGACCCGCGATGAGAGCGAACCCGGAC
GGGTCGGCACCTGGATCCTCGCCTTTTTTCTGGCTGTCCTCGCGGTGGTC
ACCGTTGCGAGCTTGGGCCATTGCCTCCAACGCGTCTACCCTGACAAGGG
AGGCGTTCTCCTCGAGTGGCTGGACAATTCCGTCCTCAAGGAAGTCGGCG
CCAACAACAGCTCGGTTGCGTCGGTCATGCCGAGCCAGAAGAAGGAGTAT
GGAGTTGGCATCAAGCACGATGCCGCGTCACTAGCCCGGAGCGCCGGAGG
GGTACTGCGGCGGCACGGCAAGAAAGGGGCGATGCCTCGAGCGGGACCGA
TGGACAGCTCCGACATGCGGCAGCGGCGGCGGCGGGAGTATGGAGTTGGC
ATCAAGCACGATGCCGCGTCACTAGCCCGGAGCGCCGGAGGGGTACTGCG
GCGGCACGGCAAGAAAGGGGCGATGCCTCGAGCGGGACCGATGGACAGCT
CCGACATGCGGCAGCGGCGGCGGCGG
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