mRNA_L-elsbetiae_contig10348.380.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig10348.380.1 vs. uniprot
Match: D7FWA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWA9_ECTSI) HSP 1 Score: 228 bits (582), Expect = 1.330e-58 Identity = 447/1028 (43.48%), Postives = 510/1028 (49.61%), Query Frame = 1 Query: 1 SLGNRSDVASQYTGGDMGSPLEWMGEEVRFFCEGYSYSEEQSYTGPLSSHMPGSGS----SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPWAPWRRQPTEPSITPVTSSPAAQPAAPRDTA-VVAMEEGGA--------QAGSSGGAPCFASRTVSSSTASMGSLGSLVMLMPPSPATTAPSERTSGRCSHFGSDSARDVAGGLRGGGAVAEVGKRDXXXXXXXXXXXXXXXXXXXXXXXXPNVETCADFAVKSGFVAPSGYQPKTTWLQLAVRKEEKXXXXXXXXXXXXXXXXTAEG---------EERKAGVVPRSPSEACFPT-------SSQRG--------GGDDTSPRPPQRPVPLSLSTSSHSQVSFPPASPAATHTPVLSPFAVLSPLAE-GVAPSLPPXXXXXXXXXXXSSPLSLHAGSPAVSVALLDAEV-SSHSTAAPESPGPLARVCCSPAASQRAAASSLPR----AEAELLHPLAAAGPGTVPPAEAGVLVSAEDEGNEERSWSPS----LLPLGSRATPRAPREDEELGKAYIALRTPDTAMTGTXXXXXXAGTDPN---------CHGDGGSDRHG---------------DDRPARRQA-EAPRSPPXXXXXXXXXXXXXDEXXXXXXXXXXXXXXXXDPAGEVDQTPERLRLPLTTPPPAGRPTRVRKA----AADXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTRASPVALSLTTVGTLPCHFLFAPPSPAGRSSSASPTSSFKSSPLAGVRPPLLPPALPLSGGRDLPPSEPGYFPL-AWSLSDSTLS-CGSRSTGGIGGGMSSVSASACSDAASPLVGMRFVAGEGVGGPXXXXXXXXXXXXXXXXXXPNSWSARGRGHPLVGVRGSVPL------PLALCGVGR----AVQGEVVPACRAPVTLPVAGGXXXXXAAVGEEAAFEGGVGGRQGKRPRRYFFP 2820 SLG RS++ASQ+T GD+GSPLEW+ EEV+ G + SEE + TG LSS + S XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TPWAPWRRQP+EPSI PV+SSPA +TA +V MEEG A AG GG PC A+R + S + SL SLVMLMPPSPA T P E FG + AGGL+ GGA A +G XXXXXX P VETCA FA KSGFV GYQP WL +A++KEEK E+ A R+ ++A F SS+ G G DTSPR P S ASP P L P E PS P XXXXXXXXXXX S + SPA S +L AE SS S AAP L + C SP ASQ +A+ AE++L + + + E+EG S SPS LL + A +E++ XXXXXX P+ C + GS+ G +R QA E R PP XXX XXXX D VD+TPERLR P+TTPPPA RP R RKA A XXXXXXXXXXXXX PTSSF++SP+ RPPLLPPA+ LSG RDLPPS+P L AWSLSDSTLS C TGG SS+ S CS+AASPLVGMRFV +G XXXXXXXXXX PNSWS G G PL+GVRGS PL P+ALCGVGR A + E V VAG A V +E++ EGGVGGR+GKRPRRYFFP Sbjct: 36 SLGYRSEIASQHTAGDIGSPLEWLAEEVKDVEMGDASSEEAANTGALSSLSANATSRHDNGSRLFGRTLNRTLTSSPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTPWAPWRRQPSEPSIAPVSSSPA-------ETAEMVNMEEGNAGAVAGAVATAGIRGGGPCIAARAIPS----LNSLESLVMLMPPSPA-TPPEEDCDAGPGPFGKQNPLAAAGGLQAGGAGARMGD-----GTTVDEXXXXXXKEGELGDGKPGVETCAQFAEKSGFVPFRGYQPSDAWLAVAMQKEEKQKGEEAEKARLAGHPALGRAVPLKEIIHEEKSVASRTERTTAKARFARNHTLVQQSSEAGPLGERKVPGDGDTSPRSP----------------SVTSASPQQPPGPGLLPDGAFRREREVSPPPSRPXXXXXXXXXXXXRS--FMPPASPANSTSLAGAECCSSQSPAAPSQRSSL-KGCTSPTASQLSASPXXXXXXXVAESQLST--YSEEXXXXXXXXXXIARACEEEGLAPFSGSPSPEKELLGCSNTAA------EEQIAXXXXXXXXXXXXXXXXXXXXXXXXXXPSPQPVVAQRRCVAEVGSEPPGAVAGGXXXXXXXXXXXXXGSRDQAAEEKRGPPVSPAEIPLPPXXX--XXXXGRSPTRPPLPDGDSTHAVDETPERLRSPVTTPPPAERPERARKAPRIVARKTGQTKRPRLSRMAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTSSFRTSPVP--RPPLLPPAVVLSG-RDLPPSDPAAAALLAWSLSDSTLSGCSRPGTGGXXXXTSSIPVSVCSEAASPLVGMRFVVKDG----GXXXXXXXXXXSCSSRSRPNSWSDHGGGVPLIGVRGSPPLGHPPSLPVALCGVGRPAASAEEEEGAAXGAGHVAAAVAGAGT---AGVVDESSCEGGVGGRRGKRPRRYFFP 1007
BLAST of mRNA_L-elsbetiae_contig10348.380.1 vs. uniprot
Match: A0A6H5JM28_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM28_9PHAE) HSP 1 Score: 199 bits (506), Expect = 5.550e-49 Identity = 377/1021 (36.92%), Postives = 435/1021 (42.61%), Query Frame = 1 Query: 1 SLGNRSDVASQYTGGDMGSPLEWMGEEVRFFCEGYSYSEEQSYTGPLSSHMPGSGS---SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPWAPWRRQPTEPSITPVTSSPAAQPAAPRDTA-VVAMEEG--GAQAGSS------GGAPCFASRTVSSSTASMGSLGSLVMLMPPSPATTAPSERTSGRCSHFGSDSARDVAGGLRGGGAVAEVGKRDXXXXXXXXXXXXXXXXXXXXXXXX----------------------------PNVETCADFAVKSGFVAPSGYQPKTTWLQLAVRKEEKXXXXXXXXXXXXXXXXTAEG---------EERKAGVVPRSPSEACFPTSSQRGGGDDTSPRPPQRPVPLSLSTSSHSQVSFPPASPAATHTPVLSPFAVLSPLAE-GVAPSLPPXXXXXXXXXXXSSPLSLHAGSPAVSVALLDAEVS-SHSTAAPESPGPLARVCCSPAASQRAAA-------------------------------------------SSLPRAEAELLHPLAAAGPGTVPPAEAGVLVSAEDEGNEERSWSPSLLPLGSRATPRAPRE--DEELGKAYIALRTPDTAMTGTXXXXXXAGTDPNCHGDGGSDRHGDDRPARRQAEAPRSPPXXXXXXXXXXXXXDEXXXXXXXXXXXXXXXXDPAGEVDQTPERLRLPLTTPPPAGRPTRVRKA-------------------------------------------------AADXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTRASPVALSLTTVGTLPCHFLFAPPSPAGRSSSASPTSSFKSSPLAGVRPPLLPPALPLSGGRDLPPSEPGYFPL-AWSLSDSTLS-CGSRSTGGIGGGMSSVSASACSDAASPLVGMRFVAGEGVGGPXXXXXXXXXXXXXXXXXXPNSWSARGRGHPLVGVRG 2622 SLG RS++ASQ+T GD+GSPLEW+ EEV+ G + SE+ + TG LSS + S + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TPWAPWRRQP+EPSI PV+SSPA +TA ++ MEEG GA AG GG PC A+R + S + SL SLVMLMPPSPA T P E FG + AGGL GGA A VG + P V TCA FA KSGFV GYQP WL +A++KEEK EE A R+ ++ + D P + V + TS S S P ASP P L P E PS P XXXXXXXXXXX S + SPA S L AE S SHS AAP L + C SP+ASQ +A+ S P E ELL A + E ++ + G EE S PS + A+P +P+ + A + P G G D GS H AE R PP D VD+TPERLR +TTPPPA RP RVRKA AA + +P LSLTTVG PCH L P ASPTSSF++SP+ RPPLLPPA+ LSG RDLPPS+P L AWSLSDSTLS C TG GGG SS+ S S+AASPLVGMRFV +G XXXXXXXX PNSW G G PL+G RG Sbjct: 18 SLGYRSEIASQHTAGDIGSPLEWLAEEVKDIEMGDASSEKAANTGALSSLSANATSRHENGSQLLGRTLNHTLSSSPQSTERGLTATSPPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTPWAPWRRQPSEPSIAPVSSSPA-------ETAEMINMEEGNAGAAAGEGATAEIRGGGPCIAARAIPS----LNSLESLVMLMPPSPA-TPPKEDCDSGPGPFGKQNTSAAAGGLEAGGAGARVGDGNTVVVAGGGSVPGQQSRGGFVPVAPWRNWVNATFVLEDEEEEEKKEGELGDGKPGVRTCAQFAAKSGFVPFRGYQPSNAWLAVAMQKEEKQKREEAERARLAGHPSLGRAVPLKEMVQEEESVASQTERTTAKTIARNHTLARQSSDAGPHGEHK-VTVDGDTSPRSP-SGPLASPQQPPGPGLRPGRAFRREREVSPPPSRPXXXXXXXXXXXXRS--FMPPASPANSTCLGGAEYSLSHSPAAPSQRSSL-KGCTSPSASQLSASPXXXXXXXVAESQLSTYSEEXXXXXXXXXXXIARACEEGPAAFSGSPSLEKELLGRSITAAEEQIATEE--LIAAGGKSGAEEGSTWPS-----TSASPPSPQTVVAQRRCVAEVGSEAPGALAGGVS-----TGXXXXXSTDSGSPDHA--------AEEKRGPPVSPAEIPLPPSPP--HPPPGRSPTPPRLPNGDSTHAVDETPERLRSLVTTPPPAERPERVRKAPRIVARKTGQTKRPRPSRIASAGAAPPSSAASSSVEMKARAVIPSAPPSAAAPWPSSLGTLSQFAAGARISPTPSAMLLSPSPKTPPPLSLTTVGAPPCHLLLTPXXXXXXXXXASPTSSFRTSPVP--RPPLLPPAVVLSG-RDLPPSDPAAAALLAWSLSDSTLSGCSRPGTGSGGGGTSSIPVSVSSEAASPLVGMRFVGKDG----------GXXXXXXXXRSRPNSWPDHGGGGPLIGGRG 986 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10348.380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10348.380.1 >prot_L-elsbetiae_contig10348.380.1 ID=prot_L-elsbetiae_contig10348.380.1|Name=mRNA_L-elsbetiae_contig10348.380.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=941bp SLGNRSDVASQYTGGDMGSPLEWMGEEVRFFCEGYSYSEEQSYTGPLSSHback to top mRNA from alignment at L-elsbetiae_contig10348:1077..5597- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig10348.380.1 ID=mRNA_L-elsbetiae_contig10348.380.1|Name=mRNA_L-elsbetiae_contig10348.380.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4521bp|location=Sequence derived from alignment at L-elsbetiae_contig10348:1077..5597- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig10348:1077..5597- >mRNA_L-elsbetiae_contig10348.380.1 ID=mRNA_L-elsbetiae_contig10348.380.1|Name=mRNA_L-elsbetiae_contig10348.380.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5646bp|location=Sequence derived from alignment at L-elsbetiae_contig10348:1077..5597- (Laminarionema elsbetiae ELsaHSoW15)back to top |