mRNA_L-elsbetiae_contig10335.371.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10335.371.1
Unique NamemRNA_L-elsbetiae_contig10335.371.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10335.371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10335contigL-elsbetiae_contig10335:2357..4728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815261.5938652-CDS-L-elsbetiae_contig10335:2356..25721622815261.5938652-CDS-L-elsbetiae_contig10335:2356..2572Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10335 2357..2572 -
1691682803.2898626-CDS-L-elsbetiae_contig10335:2356..25721691682803.2898626-CDS-L-elsbetiae_contig10335:2356..2572Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10335 2357..2572 -
1622815261.6048827-CDS-L-elsbetiae_contig10335:4644..47281622815261.6048827-CDS-L-elsbetiae_contig10335:4644..4728Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10335 4645..4728 -
1691682803.3337646-CDS-L-elsbetiae_contig10335:4644..47281691682803.3337646-CDS-L-elsbetiae_contig10335:4644..4728Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10335 4645..4728 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10335.371.1prot_L-elsbetiae_contig10335.371.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10335 2357..4728 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10335.371.1

>prot_L-elsbetiae_contig10335.371.1 ID=prot_L-elsbetiae_contig10335.371.1|Name=mRNA_L-elsbetiae_contig10335.371.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
SRAEGGTAGTPSRARPSALKKPPSFISKFKGLLSHSSSKSDCHSPTGAAA
AVAGRRSPRGFPDDQGTDNPGPNQASASSGAAAAPGGGSGQRSYTFNSPP
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mRNA from alignment at L-elsbetiae_contig10335:2357..4728-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10335.371.1 ID=mRNA_L-elsbetiae_contig10335.371.1|Name=mRNA_L-elsbetiae_contig10335.371.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2372bp|location=Sequence derived from alignment at L-elsbetiae_contig10335:2357..4728- (Laminarionema elsbetiae ELsaHSoW15)
TCCAGGGCGGAAGGAGGAACCGCGGGGACCCCGTCGAGGGCACGGCCGTC
GGCTCTCAAGAAGCCTCCCAGTTTCATCAGCAAGGCAAGCAAAAGCGATG
CATGAATTACACGCGCTTGTCTCGTGTACCGTAGGTGACACAAGATACCA
CGGCACCCCCTGGACAGATTTTCAAAGCTCGATTCCTCCCCAGCGAGAAG
AATGACAGTGTCGAAAGGGATGACGTCGGAAATATCTAGTCGAGGACTGT
CCGAAAATGTGTCGTTTGGTGCTGACACCTTTTTCGTTACGGAGTTATGG
AGCTCTAAAATTCGGCCCAGGGGGTGTAGTATCTTGTGTCACCTACGGTA
GCTGGTGTGTGTGTATGTACATATCTCATGAGGCACACGTTTTGTCTCCG
TGCAATGAAACGGCTTTCAAGTCACAAGCCTCCCAGTCTCGCCGTCAGCA
AGGGAGGCAAGCGGTGCATGAAAACACACTTGTTTGATGTAGCTCGTGCA
TGTTGTTGTTTCTTCACATTAGCTCGTATAATCGAGATTGCTAATTCCAA
AAATCTAGCAACTCACGGCCCGTGGTCACAGAAGTGCTAGAGCCATCAGA
AGATCCGAAAAAGGACATACGCGGATCCACCGGGCAAGGGTACACAAAGC
CGAGGAGGTACACCTATGAAGATGCCGGTAAAAAACATAGAAGTATATCC
TACGAACCACGCATCCACGAATGAATCTCCATTCGACTGCAGAACTACGT
TTCCCCCCCGTCCACGATTAACCAATGCACGGTTGGTTGCCGGCTACAGC
CAATGACTGTCTGGAGTGCTGCCTGTACAAAAACGCACGGGTGGCGTGGT
GGATATGGGAGAGGAACGCGATTGCTGTCTGAAGTGCCTCCCAGTCTCGC
CATCCGCGAGGGAAGCAAGCGGTGCATGAAAACACACACCTTGTCTGATG
TAGCTCGTACATATGCATGGATGTATCTCATGAAGCGCACCTTATCCCCA
TCAAATGAAACGGCTTTCAAGTCATAAGCCTCCCAGTTTCGTCATCGGCA
AGGCAAGCAAGCGGTGTTTGAAAACACACGCTTGTCTCGTGAACTTAGCT
GGATATCTCGTGTATGCAGCACATCTTGTCTTCCATAAAATGAAACGGTC
ATCGAGAGGCCTCCCAGTTTCATCAGCAAGGCGAGCGAGCTTTGTGTGTA
CAATTTTACTGGAAGCACATATTATGTCCATAAAATGAAACGGCTCTCAA
GGCACACGCCTCCCAATCTCACCAGCGAGTCCAAGCAAGCAGTGTAGTAA
AGAGCACACGCTTCTCATGCTGCTACTTGTCTCGCATGAAGCACATCAAC
GCTTACATCAAATGAAACGGTTCTTGACAAGTATCCCGGTTTCATGAGCA
AGGCCAGCAAGCTGTGCGGAACAAACATCCTCGTCTCATGCAGCTGGATA
TCTCATGTATGTACATGAAATAGCTCACGTCATCTCCATCAAATGAAATT
GCTCTCGAGGAAAACGCTTCCCAGATTCGTCATTGAGACGAGCTGACATC
CATGAAATGAACCTGGCCTCAAATGAAAACGCCTCCCAGATTCGTCAGCA
AGGGTAAGCAAGCCCAGCCATGTAGCAAGTGTCTTCTCCATCAAATTAAA
CGGTCCACAAGACGCTTCCATCTCATCAAGTCAAAGCTACCGCAGCACGC
ATTATTGATCTCCACAAAATGGTACTCTATCTAAGAACCGAAACTCGACT
TTTTGGGTGACGAACGACGAGAGCAGCGCAGGGCTGAATGAGCGCTCGTT
CTGGAACCAGTTCTCATTTAACCAGTTCTAGTCAACCGGACAATGTCTCC
GAAAATCCGCCCAAGTTGAACAGACTGCTGAGCCACTCAATCTTTCAAGT
GAACCAAAAGGCTCAGATCAACACGACACACGACACACCGTTCGCTAAAC
TGGACCGAACCGAACCGAACCGAACCTGAATTGCTTCGAACTTCGAACAA
AACAGTTCAAGGTTCAAGTGCCTACTGCTGAGCCACTCGTCTTTCAAGTC
CAGTGAACAAAAAAAGGCTCAGATCAACACGACACACGACCCACCCTTTC
GCTCCAACTGAACCGAACCAAATCGAACCGAACCTGAATTGCTTCGGACA
CAACAGTTCAAGGGCCTGCTTAGCCACTCGTCGTCCAAGTCGGACTGCCA
CTCCCCCACCGGCGCCGCGGCGGCAGTGGCAGGGAGGAGGTCGCCGCGAG
GGTTCCCCGATGACCAAGGCACCGATAATCCGGGGCCTAACCAAGCATCC
GCGTCCTCGGGCGCCGCTGCCGCGCCTGGAGGCGGTAGCGGGCAAAGGAG
CTACACCTTCAACAGTCCCCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10335:2357..4728-

>mRNA_L-elsbetiae_contig10335.371.1 ID=mRNA_L-elsbetiae_contig10335.371.1|Name=mRNA_L-elsbetiae_contig10335.371.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig10335:2357..4728- (Laminarionema elsbetiae ELsaHSoW15)
TCCAGGGCGGAAGGAGGAACCGCGGGGACCCCGTCGAGGGCACGGCCGTC
GGCTCTCAAGAAGCCTCCCAGTTTCATCAGCAAGTCCAGGGCGGAAGGAG
GAACCGCGGGGACCCCGTCGAGGGCACGGCCGTCGGCTCTCAAGAAGCCT
CCCAGTTTCATCAGCAAGTTCAAGGGCCTGCTTAGCCACTCGTCGTCCAA
GTCGGACTGCCACTCCCCCACCGGCGCCGCGGCGGCAGTGGCAGGGAGGA
GGTCGCCGCGAGGGTTCCCCGATGACCAAGGCACCGATAATCCGGGGCCT
AACCAAGCATCCGCGTCCTCGGGCGCCGCTGCCGCGCCTGGAGGCGGTAG
CGGGCAAAGGAGCTACACCTTCAACAGTCCCCCGTTCAAGGGCCTGCTTA
GCCACTCGTCGTCCAAGTCGGACTGCCACTCCCCCACCGGCGCCGCGGCG
GCAGTGGCAGGGAGGAGGTCGCCGCGAGGGTTCCCCGATGACCAAGGCAC
CGATAATCCGGGGCCTAACCAAGCATCCGCGTCCTCGGGCGCCGCTGCCG
CGCCTGGAGGCGGTAGCGGGCAAAGGAGCTACACCTTCAACAGTCCCCCG
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