mRNA_L-elsbetiae_contig1033.369.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1033.369.1 vs. uniprot
Match: A0A6H5KWQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ8_9PHAE) HSP 1 Score: 533 bits (1372), Expect = 4.190e-168 Identity = 293/392 (74.74%), Postives = 316/392 (80.61%), Query Frame = 3 Query: 21 TLGFRGWGQGLGAVGAAGGIELFDVPAGESLTLRVTPRLDKLRSGTGLALLANEQSLEEHFVVYNRRHPTEQYRISLKLTSGALRMFFLSPGSKNAYPFWTLEDKITTFLQAYQWMWREFLDLEPELNAVLSELERGGAAFKESGLLVFERALNRLDVAMVAAGEPRSTVGGTRSVSATSAAATGSA--RPTRRVSATGXXASSVGEDGGHAGSSSSRSLSSSPAAAAGAMVAVAQQCSRLIFEMFYITDELLYYALKHEGFVGEFALRLANLVYSVVFRHEVFVAFAALPGGGDAGTDGDGDGEGAPVFLRRWGAHVNHFLGYFPYPQAKPVILPLVELRRSLAPCFAPLPAGDKGRAREGAPTLDDAPSPRNAGPTAASGWKGGGXXGEE 1190 TLGFRGWGQGLG G AGGIELFDVPAGESLTLR+TPRLDKLRSGTGLALLANEQSLEEHF+VYNRRHPTEQYRISLKLTSGALRMFFLSPGSKNAYPFWTLEDKITTFLQAYQWMW EFLDLEP+LNAVL E E+GGA FKESGLLVF RAL+ LD AM+AAGEPRS + GTRS SA AAT +A R T + S G S D G A SSSS + P G +VAVAQQCSRLIFEMF ITDELL+YALKHEG VGEF L+LANLVY+VVFRHE+FVAFAAL DG DG+GAPVFLRRWGAHVNHFLGYFP PQA+P ILPLV++RRSLAP FA LPAGDKGR REG PT+DDAP A + + G GG G+E Sbjct: 3163 TLGFRGWGQGLGGAGVAGGIELFDVPAGESLTLRITPRLDKLRSGTGLALLANEQSLEEHFMVYNRRHPTEQYRISLKLTSGALRMFFLSPGSKNAYPFWTLEDKITTFLQAYQWMWSEFLDLEPQLNAVLREREKGGAVFKESGLLVFRRALDHLDAAMIAAGEPRSKICGTRSNSAGGVAATSAAVVRSTSQCSDCGDEGGSC--DDGRAFSSSSADAAGDP----GPLVAVAQQCSRLIFEMFNITDELLFYALKHEGRVGEFPLKLANLVYTVVFRHEIFVAFAALA------LDGGDDGDGAPVFLRRWGAHVNHFLGYFPCPQAQPSILPLVDMRRSLAPFFAALPAGDKGRTREGVPTVDDAPISTAAVLSPSRGGVVGGDGGKE 3542
BLAST of mRNA_L-elsbetiae_contig1033.369.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI) HSP 1 Score: 279 bits (714), Expect = 5.460e-80 Identity = 180/314 (57.32%), Postives = 196/314 (62.42%), Query Frame = 3 Query: 180 EQSLEEHFVVYNRRHPTEQYRISLKLTSGALRMFFLSPGSKNAYPFWTLEDKITTFLQAYQWMWREFLDLEPELNAVLSELERGGAAFKESGLLVFERALNRLDVAMVAAGEPRSTVGGTRSVSATSAAATGSA--RPTRRVSATGXXASSVGEDGGHAGSSSSRSLSSSPAAAAG---AMVAVAQQCSRLIFEMFYITDELLYYALKHEGFVGEFALRLANLVYSVVFRHEVFVAFAALPGGGDAGTDGDGDGEGAPVFLRRWGAHVNHFLGYFPYPQAKPVILPLVELRRSLAPCFAPLPAGDKGRAREGAP 1106 E L EHF+VYNRRHPTEQYRISLKLTSGALRMFFLSPGSKNAYPFWTLEDKITTFLQAY+WMW EFLDLEP+LNAVL E ERGGA FKESGLLVF RAL+ LD AM+AAGEPRS + GTRS S AAT +A R TR+ S G++GG G R+LSSS A AAG +VAVAQQCSRLIFEMF ITDELL+YALKHEG F L G G G P + G N F G FP P +P LPL P F P PAG +G G P Sbjct: 4393 EIQLFEHFMVYNRRHPTEQYRISLKLTSGALRMFFLSPGSKNAYPFWTLEDKITTFLQAYKWMWSEFLDLEPQLNAVLRERERGGAVFKESGLLVFRRALDHLDAAMIAAGEPRSKICGTRSNSTGGVAATSAAVARSTRQCS-------DCGDEGGSCGDG--RALSSSSADAAGDPGPLVAVAQQCSRLIFEMFNITDELLFYALKHEG-------------------------FRRLRRAGARGGRRRRRGSRLPAEV---GGPRNPFPGVFPVPPGQPKNLPLGGEEEFARPFFGPPPAGRQGGDERGGP 4669
BLAST of mRNA_L-elsbetiae_contig1033.369.1 vs. uniprot
Match: A0A835YYQ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYQ9_9STRA) HSP 1 Score: 156 bits (395), Expect = 9.310e-38 Identity = 131/371 (35.31%), Postives = 175/371 (47.17%), Query Frame = 3 Query: 48 GLGAVGAAGGIELFDVPAGESLTLRVTPRLDKLRSGTGLALLANEQSLEEHFVVYNRRHPTEQYRISLKLTSGALRMFFLSPGSKNAYPFWTLEDKITTFLQAYQWMWREFLDLEPELNAVLSELERGGAAFKESGLLVFERALNRLDVAMVAAGEPRSTVGGTRSVSATSAAATGS--ARPTRRVSATGXXASSVGEDGGHA-----GSSSSRSLSSSPAAA-AGAMVAVAQQCSRLIFEMFYITDELLYYALKHEGFVGEFALRLANLVYSVVFRHEVFVAFAALPG---------------------------------GGDAGTDGDGDGEGAPVFLRRWGAHVNHFLGYFPYPQAKPVILPLVELR 1037 G A G G+++F + G SL LRVTP ++ L SG GL+LLAN++ +EEHF+VYN NAY FWTLED IT+FL+AY MW + P L ++L ++ +E L L + V A R + + TS AT A P R ++V GG A G L++ PA+ A + A QC+RL FEM Y+TDELLYYALKHEG+VG+FAL+LANL+YSV F AFAA P G + GT+ + P L R+ AH+++FL +FPY +A I PLV+LR Sbjct: 2035 GAAAGGPIKGVQVFSLLPGTSLRLRVTPNMEALSSGDGLSLLANDEHVEEHFMVYN-----------------------------NAYQFWTLEDNITSFLRAYHCMWAQLFQARPALASILGDIRAKSNPLQEPELSRVAAVLQEVSVLAEALEAVRIVQDDGSNFNITSPPATPGKHALPLR--------GNAVAPGGGGAVLEGVGPMVPIPLTTLPASVVAEELGEAAAQCARLSFEMLYLTDELLYYALKHEGYVGDFALKLANLLYSV------FAAFAASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGEERGTENRKE---LPALLIRFAAHLDYFLSFFPYVKAG--IKPLVDLR 2357
BLAST of mRNA_L-elsbetiae_contig1033.369.1 vs. uniprot
Match: A0A485LAB2_9STRA (Aste57867_18395 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LAB2_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 3.880e-11 Identity = 73/254 (28.74%), Postives = 100/254 (39.37%), Query Frame = 3 Query: 117 LRVTPRLDKLRSGTGLALLANEQSLEEHFVVYNRRHPTEQYRISLKLTSGALRMFFLSPGSKNAYPFWTLEDKITTFLQAYQWMWREFLDLEPELNAVLSELERGGAAFKESGLLVFERALNRLDVAMVAAGEPRSTVGGTRSVSATSAAATGSARPTRRVSATGXXASSVGEDGGHAGSSSSRSLSSSPAAAAGAMV----AVAQQCSRLIFEMFYITDELLYYALKHEGFVGEFALRLANLVYSVVFRHEVF 866 +R+ P L+ LR E +++EH YN + E Y +SL T F++ P + AYPF TLED I FL+ Y W L E G SG + N +D AM P S PT R +A ++ AAA +V AQ L F+ +YITDEL++Y ++ G A+ LA+LVY VVF H+VF Sbjct: 3240 VRIRPNLELLRKNR----TQWEHAVKEHIAFYNMKQFAEHYHVSLSFTPSNTSSFYVPPQLREAYPFSTLEDTIAKFLRHYNLFWTTLL-------------EALGGHGGHSGATMLYDLENAIDHAM-----PSS--------------------PTHRAAA------------------------ANSFAAAAVVVRDTHTFAQAFRALYFDFYYITDELIWYGIRSSA--GRHAITLADLVYGVVFGHDVF 3425
BLAST of mRNA_L-elsbetiae_contig1033.369.1 vs. uniprot
Match: A0A7S0ZEV6_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZEV6_9RHOD) HSP 1 Score: 62.4 bits (150), Expect = 7.790e-7 Identity = 79/295 (26.78%), Postives = 111/295 (37.63%), Query Frame = 3 Query: 117 LRVTPRLDKLRSGTGLALLANEQSLEEHFVVYNRRHPTEQYRISLKLTSGALRMFFLSPGSKNAYPFWTLEDKITTFLQAYQWMWREFLDLEPELNAVLSELERGGAAFKESGLLVFERALNRLDVAMVAAGEPRSTVGGTRSVSATSAAATGSARPTRRVSATGXXASSVGEDGGHAGSSSSRSLSSSPAAAAGAMVAVAQQCSRLIFEMFYITDELLYYALKHEGFVGEFALRLANLVYSVVFRHEVFVAFAALPGGGDAGTDGDGDGEGAPVF---LRRWGAHVNHFLGYFP 992 L V P L ++R L NE+ +EEH +YN + P E + + L+L+ G F S + A F LED + FL + W A+FK V + L +AM + GE +V A TG S L ++ A Q +L+FEM Y+TDEL+YYAL+ E + LAN++YS VF+H +F F D PV L + + HFL YFP Sbjct: 261 LVVKPNLVRIRERWNF--LKNEKYVEEHITIYNEKVPREFFWVRLRLSFGGATEFSASI-HRRATAFAELEDIVAAFLPLFATFW---------------------ASFKRPR--VAGSGADSLALAMASGGEGNESVDHLLESIARHRRVTGDVESLE---------------------SWLEKLETAKQA---------QGYDQLLFEMHYVTDELVYYALRDPS---EAVIELANVLYSFVFKHSIFSEFI------HHAFDSSRSNAHIPVMPRVLAPFVGQLTHFLSYFP 490
BLAST of mRNA_L-elsbetiae_contig1033.369.1 vs. uniprot
Match: A0A7S3A8C9_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A8C9_9RHOD) HSP 1 Score: 62.8 bits (151), Expect = 9.550e-7 Identity = 77/303 (25.41%), Postives = 116/303 (38.28%), Query Frame = 3 Query: 111 LTLRVTPRLDKLRSGTGLALLANEQSLEEHFVVYNRRHPTEQYRISLKLTSGALRMFFLSPGSKNAYPFWTLEDKITTFLQAYQWMWREFLDLEPELNAVLSELERGGAAFKESGLLVFERALNRLDVAMVAAGEPRSTVGGTRSVSATSAAATGSARPTRRVSATGXXASSVGEDGGHAGSSSSRSLSSSPAAAAGAMVAVAQQCSR---------LIFEMFYITDELLYYALKHEGFVGEFALRLANLVYSVVFRHEVFVAFAALPGGGDAGTDGDGDGEGAPVFLRRWGAHVNHFLGYFP 992 LTLRV+ L++L A L E+ +EEH VYN+R P E Y + L+++ G F S+ AY F LE+ + FLQ W V PR G SV+ A+ +G + + + A + E + ++S AA ++ QQ L+FEM Y+TDEL+Y+AL+H ALR+A +++S +F+ VF D A + W + +FL YFP Sbjct: 2633 LTLRVSRLLERL------AFLVKEKYVEEHIAVYNKRLPEEYYWVRLRISFGGASEFSAVMNSR-AYTFSVLEELVALFLQKSSAFW-------------------------------------------VNIRRPRVAGAGVDSVAMAVASESGDSDSVQNMLA------QIRE----------KQRNASAAAGLPSLDDWFQQLDETMRKPDYMNLLFEMHYVTDELVYFALRHGP---SSALRIATMLFSFIFKQSVF----------STSLQADHGSAIASRLIAPWAGQLRYFLSYFP 2856
BLAST of mRNA_L-elsbetiae_contig1033.369.1 vs. uniprot
Match: A0A7S3XQE6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQE6_HETAK) HSP 1 Score: 55.5 bits (132), Expect = 6.760e-5 Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 3 Query: 735 LIFEMFYITDELLYYALKHEGFVGEFALRLANLVYSVVFRHEVFVAFAALPGGG 896 + F+ Y+ DEL+Y+A+ HEG G FAL+LA L++ + F H VF A AL GG Sbjct: 101 IYFDFHYLVDELVYFAMVHEGRSGNFALQLACLLFKITFSHWVFKAAIALAQGG 154 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1033.369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1033.369.1 >prot_L-elsbetiae_contig1033.369.1 ID=prot_L-elsbetiae_contig1033.369.1|Name=mRNA_L-elsbetiae_contig1033.369.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=307bp MFFLSPGSKNAYPFWTLEDKITTFLQAYQWMWREFLDLEPELNAVLSELEback to top mRNA from alignment at L-elsbetiae_contig1033:23251..26707+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1033.369.1 ID=mRNA_L-elsbetiae_contig1033.369.1|Name=mRNA_L-elsbetiae_contig1033.369.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3457bp|location=Sequence derived from alignment at L-elsbetiae_contig1033:23251..26707+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1033:23251..26707+ >mRNA_L-elsbetiae_contig1033.369.1 ID=mRNA_L-elsbetiae_contig1033.369.1|Name=mRNA_L-elsbetiae_contig1033.369.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1842bp|location=Sequence derived from alignment at L-elsbetiae_contig1033:23251..26707+ (Laminarionema elsbetiae ELsaHSoW15)back to top |