mRNA_L-elsbetiae_contig10313.358.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10313.358.1
Unique NamemRNA_L-elsbetiae_contig10313.358.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10313.358.1 vs. uniprot
Match: A0A6H5JIN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN4_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 2.480e-47
Identity = 78/87 (89.66%), Postives = 84/87 (96.55%), Query Frame = 1
Query:    7 GVFDERMLVPETTDQFLWILIVAAFGAFFAAFGIGANDVANAFATSVGAKALTLRQAVVLAGIFEFLGAVFLGSHVTKTIRKGIADV 267
            G++ ER+LVPETTDQFLWILIV AFGAFFAAFGIGANDVANAFATSVGAKALT++QAV+LAGIFEFLGAVFLGSHVTKTIR GIADV
Sbjct:    4 GLYAERILVPETTDQFLWILIVGAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVILAGIFEFLGAVFLGSHVTKTIRSGIADV 90          
BLAST of mRNA_L-elsbetiae_contig10313.358.1 vs. uniprot
Match: D7G5U7_ECTSI (High affinity phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U7_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 9.590e-45
Identity = 76/83 (91.57%), Postives = 81/83 (97.59%), Query Frame = 1
Query:   19 ERMLVPETTDQFLWILIVAAFGAFFAAFGIGANDVANAFATSVGAKALTLRQAVVLAGIFEFLGAVFLGSHVTKTIRKGIADV 267
            ER+L PE TDQFLWILIVAAFGAFFAAFGIGANDVANAFATSVGAKALT++QAVVLAG+FEFLGAVFLGSHVTKTIRKGIAD+
Sbjct:   33 ERILAPEATDQFLWILIVAAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAGVFEFLGAVFLGSHVTKTIRKGIADI 115          
BLAST of mRNA_L-elsbetiae_contig10313.358.1 vs. uniprot
Match: A0A6H5JNE7_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE7_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 3.800e-44
Identity = 79/89 (88.76%), Postives = 86/89 (96.63%), Query Frame = 1
Query:    1 MDGVFDERMLVPETTDQFLWILIVAAFGAFFAAFGIGANDVANAFATSVGAKALTLRQAVVLAGIFEFLGAVFLGSHVTKTIRKGIADV 267
            MDGVF+ER+L PETTDQ+LWILIVA+FGAFFAAFGIGANDVANAFATSVGAKALT++QAVVLA IFEF GAVFLGSHVTKTIRKGIAD+
Sbjct:    1 MDGVFEERILAPETTDQWLWILIVASFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAAIFEFAGAVFLGSHVTKTIRKGIADI 89          
BLAST of mRNA_L-elsbetiae_contig10313.358.1 vs. uniprot
Match: D7G0K9_ECTSI (Phosphate transporter n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K9_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 4.340e-41
Identity = 75/86 (87.21%), Postives = 81/86 (94.19%), Query Frame = 1
Query:    7 GVFDERMLVPETTDQFLWILIVAAFGAFFAAFGIGANDVANAFATSVGAKALTLRQAVVLAGIFEFLGAVFLGSHVTKTIRKGIAD 264
            G++ ER+L PETTD FLWI+IV AFGAFFAAFGIGANDVANAFATSVGAKALT++QAVVLAGIFEFLGAVFLGSHVTKTIR GIAD
Sbjct:    4 GLYTERILAPETTDHFLWIVIVGAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAGIFEFLGAVFLGSHVTKTIRSGIAD 89          
BLAST of mRNA_L-elsbetiae_contig10313.358.1 vs. uniprot
Match: D7FZJ7_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ7_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 3.410e-38
Identity = 73/87 (83.91%), Postives = 78/87 (89.66%), Query Frame = 1
Query:    7 GVFDERMLVPETTDQFLWILIVAAFGAFFAAFGIGANDVANAFATSVGAKALTLRQAVVLAGIFEFLGAVFLGSHVTKTIRKGIADV 267
            G+  ER+L P+TT+ FLWILIV  FGAFFAAFGIGANDVANAFATSVGAKALTLRQAVVLAGIFEFLGAVFLGSHVT TIR G AD+
Sbjct:    4 GLNAERILAPDTTNGFLWILIVGTFGAFFAAFGIGANDVANAFATSVGAKALTLRQAVVLAGIFEFLGAVFLGSHVTSTIRSGTADI 90          
BLAST of mRNA_L-elsbetiae_contig10313.358.1 vs. uniprot
Match: D7FWT9_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT9_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 5.510e-36
Identity = 67/86 (77.91%), Postives = 77/86 (89.53%), Query Frame = 1
Query:    7 GVFDERMLVPETTDQFLWILIVAAFGAFFAAFGIGANDVANAFATSVGAKALTLRQAVVLAGIFEFLGAVFLGSHVTKTIRKGIAD 264
            GV DER+L P  T +FLWI+IV++ GA FAAFGIGAND+ANAFATSVGA+ALT++QAVVLAG+FEFLGAVFLGSHV KTIR GIAD
Sbjct:    4 GVLDERILAPAVTSEFLWIVIVSSIGAVFAAFGIGANDLANAFATSVGARALTIKQAVVLAGVFEFLGAVFLGSHVAKTIRSGIAD 89          
BLAST of mRNA_L-elsbetiae_contig10313.358.1 vs. uniprot
Match: D8LJQ3_ECTSI (Pho4 high affinity phosphate transporter, probable (IC) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ3_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 9.130e-35
Identity = 59/93 (63.44%), Postives = 75/93 (80.65%), Query Frame = 1
Query:    1 MDGVFDERMLVPETTDQFLWILIVAAFGAFFAAFGIGANDVANAFATSVGAKALTLRQAVVLAGIFEFLGAVFLGSHVTKTIRKGIADVSFVY 279
            M      RML PE +DQ+LWI++V AFG+F AAFGIGANDVANAF+TSVGA+A+TL+QA+VLAG+FEFLGA+ LG+ VTK IR+ I +   +Y
Sbjct:    1 MSEALQPRMLAPEASDQWLWIVVVGAFGSFLAAFGIGANDVANAFSTSVGARAVTLKQAIVLAGVFEFLGALLLGAPVTKAIRENIVNSRLIY 93          
BLAST of mRNA_L-elsbetiae_contig10313.358.1 vs. uniprot
Match: A0A6U1NDP7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NDP7_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.070e-29
Identity = 57/74 (77.03%), Postives = 63/74 (85.14%), Query Frame = 1
Query:   46 DQFLWILIVAAFGAFFAAFGIGANDVANAFATSVGAKALTLRQAVVLAGIFEFLGAVFLGSHVTKTIRKGIADV 267
            D +LWI+IV  F A F A+GIGANDVANAF+TSVGAK LTL+QAV+L GIFEFLGA   GSHVTKTIRKGIADV
Sbjct:    7 DDYLWIVIVGGFLAVFTAYGIGANDVANAFSTSVGAKTLTLKQAVILGGIFEFLGAFLFGSHVTKTIRKGIADV 80          
BLAST of mRNA_L-elsbetiae_contig10313.358.1 vs. uniprot
Match: A0A7S3Y1S0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1S0_HETAK)

HSP 1 Score: 107 bits (267), Expect = 3.120e-28
Identity = 56/86 (65.12%), Postives = 67/86 (77.91%), Query Frame = 1
Query:   13 FDERML-VPETTDQFLWILIVAAFGAFFAAFGIGANDVANAFATSVGAKALTLRQAVVLAGIFEFLGAVFLGSHVTKTIRKGIADV 267
            +D RML        +LWI++V  F A F ++GIGANDVANAFATSVGAK L+++ AV+LA IFEF GAV LGSHVTKTIRKGIAD+
Sbjct:    3 YDARMLEATYEPKDYLWIVVVGGFLAVFCSYGIGANDVANAFATSVGAKTLSVKHAVILAAIFEFGGAVLLGSHVTKTIRKGIADI 88          
BLAST of mRNA_L-elsbetiae_contig10313.358.1 vs. uniprot
Match: A0A7S2V1L4_9STRA (Phosphate transporter n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1L4_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.130e-27
Identity = 57/74 (77.03%), Postives = 63/74 (85.14%), Query Frame = 1
Query:   46 DQFLWILIVAAFGAFFAAFGIGANDVANAFATSVGAKALTLRQAVVLAGIFEFLGAVFLGSHVTKTIRKGIADV 267
            D +LWI+IV  F A F A+GIGANDVANAF+TSVGAK LTL+QAV+L GIFEFLGA   GSHVTKTIRKGIADV
Sbjct:    7 DDYLWIVIVGGFLAVFTAYGIGANDVANAFSTSVGAKTLTLKQAVILGGIFEFLGAFLFGSHVTKTIRKGIADV 80          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10313.358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIN4_9PHAE2.480e-4789.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5U7_ECTSI9.590e-4591.57High affinity phosphate transporter n=1 Tax=Ectoca... [more]
A0A6H5JNE7_9PHAE3.800e-4488.76Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7G0K9_ECTSI4.340e-4187.21Phosphate transporter n=2 Tax=Ectocarpus siliculos... [more]
D7FZJ7_ECTSI3.410e-3883.91Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D7FWT9_ECTSI5.510e-3677.91Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D8LJQ3_ECTSI9.130e-3563.44Pho4 high affinity phosphate transporter, probable... [more]
A0A6U1NDP7_9STRA1.070e-2977.03Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3Y1S0_HETAK3.120e-2865.12Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2V1L4_9STRA2.130e-2777.03Phosphate transporter n=1 Tax=Fibrocapsa japonica ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10313contigL-elsbetiae_contig10313:1007..1285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.6
Seed ortholog evalue1.1e-38
Seed eggNOG ortholog2880.D7G0K8
Preferred namePHO89
KEGG koko:K01280,ko:K03306,ko:K14640
KEGG TC2.A.20,2.A.20.2
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0005215,GO:0005315,GO:0005436,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006817,GO:0006820,GO:0008150,GO:0008324,GO:0012505,GO:0015075,GO:0015077,GO:0015081,GO:0015291,GO:0015293,GO:0015294,GO:0015318,GO:0015319,GO:0015370,GO:0015672,GO:0015698,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0031226,GO:0034220,GO:0035435,GO:0035725,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098655,GO:0098656,GO:0098660,GO:0098661,GO:0098662
EggNOG free text desc.inorganic phosphate transmembrane transporter activity
EggNOG OGsCOG0306@1,KOG2493@2759
EC3.4.14.10
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko02000,ko03110
Exons1
Model size279
Cds size279
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815260.4149237-CDS-L-elsbetiae_contig10313:1006..12851622815260.4149237-CDS-L-elsbetiae_contig10313:1006..1285Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10313 1007..1285 +
1691682802.434975-CDS-L-elsbetiae_contig10313:1006..12851691682802.434975-CDS-L-elsbetiae_contig10313:1006..1285Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10313 1007..1285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10313.358.1prot_L-elsbetiae_contig10313.358.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10313 1007..1285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10313.358.1

>prot_L-elsbetiae_contig10313.358.1 ID=prot_L-elsbetiae_contig10313.358.1|Name=mRNA_L-elsbetiae_contig10313.358.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=93bp
MDGVFDERMLVPETTDQFLWILIVAAFGAFFAAFGIGANDVANAFATSVG
AKALTLRQAVVLAGIFEFLGAVFLGSHVTKTIRKGIADVSFVY
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mRNA from alignment at L-elsbetiae_contig10313:1007..1285+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10313.358.1 ID=mRNA_L-elsbetiae_contig10313.358.1|Name=mRNA_L-elsbetiae_contig10313.358.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=279bp|location=Sequence derived from alignment at L-elsbetiae_contig10313:1007..1285+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGGTGTGTTCGACGAGCGCATGCTGGTCCCCGAGACCACTGACCA GTTCCTCTGGATCCTCATCGTCGCCGCCTTCGGCGCCTTCTTCGCCGCCT TCGGGATCGGGGCCAACGATGTCGCCAACGCCTTCGCCACGTCCGTGGGC GCCAAGGCGCTCACCCTGCGCCAGGCCGTCGTCCTCGCCGGCATCTTCGA GTTCCTGGGCGCCGTGTTCCTGGGCTCGCACGTGACCAAGACCATTCGCA AGGGCATCGCAGACGTGAGCTTTGTGTAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10313:1007..1285+

>mRNA_L-elsbetiae_contig10313.358.1 ID=mRNA_L-elsbetiae_contig10313.358.1|Name=mRNA_L-elsbetiae_contig10313.358.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig10313:1007..1285+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGGTGTGTTCGACGAGCGCATGCTGGTCCCCGAGACCACTGACCA
GTTCCTCTGGATCCTCATCGTCGCCGCCTTCGGCGCCTTCTTCGCCGCCT
TCGGGATCGGGGCCAACGATGTCGCCAACGCCTTCGCCACGTCCGTGGGC
GCCAAGGCGCTCACCCTGCGCCAGGCCGTCGTCCTCGCCGGCATCTTCGA
GTTCCTGGGCGCCGTGTTCCTGGGCTCGCACGTGACCAAGACCATTCGCA
AGGGCATCGCAGACGTGAGCTTTGTGTATATGGACGGTGTGTTCGACGAG
CGCATGCTGGTCCCCGAGACCACTGACCAGTTCCTCTGGATCCTCATCGT
CGCCGCCTTCGGCGCCTTCTTCGCCGCCTTCGGGATCGGGGCCAACGATG
TCGCCAACGCCTTCGCCACGTCCGTGGGCGCCAAGGCGCTCACCCTGCGC
CAGGCCGTCGTCCTCGCCGGCATCTTCGAGTTCCTGGGCGCCGTGTTCCT
GGGCTCGCACGTGACCAAGACCATTCGCAAGGGCATCGCAGACGTGAGCT
TTGTGTAT
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