mRNA_L-elsbetiae_contig1029.334.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1029.334.1
Unique NamemRNA_L-elsbetiae_contig1029.334.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1029.334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1029contigL-elsbetiae_contig1029:18248..18909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size664
Cds size384
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815257.9372356-UTR-L-elsbetiae_contig1029:18247..185251622815257.9372356-UTR-L-elsbetiae_contig1029:18247..18525Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1029 18248..18525 +
1691682800.5927184-UTR-L-elsbetiae_contig1029:18247..185251691682800.5927184-UTR-L-elsbetiae_contig1029:18247..18525Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1029 18248..18525 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815257.9481533-CDS-L-elsbetiae_contig1029:18525..189091622815257.9481533-CDS-L-elsbetiae_contig1029:18525..18909Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1029 18526..18909 +
1691682800.6084836-CDS-L-elsbetiae_contig1029:18525..189091691682800.6084836-CDS-L-elsbetiae_contig1029:18525..18909Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1029 18526..18909 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1029.334.1prot_L-elsbetiae_contig1029.334.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1029 18526..18909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1029.334.1

>prot_L-elsbetiae_contig1029.334.1 ID=prot_L-elsbetiae_contig1029.334.1|Name=mRNA_L-elsbetiae_contig1029.334.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
MQQRQQTQHHALLHARDIQTRQAHAGRQAACFPFPRLRSPSSTKTNTNDR
HLKPLGPSLTPSKPAGRRPQLNTPTAQASEADRAHAHTHAHHSLVAKHGS
LSIWWAISKQNVRHAQQKPLLLLRPSCS
back to top

mRNA from alignment at L-elsbetiae_contig1029:18248..18909+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1029.334.1 ID=mRNA_L-elsbetiae_contig1029.334.1|Name=mRNA_L-elsbetiae_contig1029.334.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=662bp|location=Sequence derived from alignment at L-elsbetiae_contig1029:18248..18909+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGTGTGCAACATTTCAAGACGCGTTGCGCGCGTGAGAGAGCAAAAAAT
GGGGGTGTGCATGTGCATTGTACCTAAGATCGCGCGGCTAGTTCGTGGTG
GGGGTGAAGTAAAGTACCCCTGACCCAACAGCGTTGCTTACCGACCGTAG
AAACGAGGAAGCGCACCTGAAACCGTCGGCGCCGCGAGGCATGGCATGCA
CGGCATCGCAAGCAGGCAGGCAGGCAGGCAGCACGCCACACACAAATACC
AGCGGCGTGCACCTCGCCAGATGTAGACATGCAGCAACGACAACAAACAC
AGCATCACGCTCTTCTTCACGCACGCGATATTCAGACGAGACAGGCTCAC
GCCGGCAGGCAAGCAGCCTGTTTTCCCTTTCCCCGTCTTCGATCCCCCTC
CTCAACGAAGACAAACACAAACGACCGACACCTGAAACCCCTTGGTCCTT
CTCTTACTCCTTCCAAACCCGCTGGAAGACGACCACAGCTAAACACACCC
ACAGCGCAGGCTTCAGAGGCTGACCGAGCGCACGCGCACACACACGCGCA
CCATTCCCTCGTGGCCAAGCACGGATCGCTGAGCATTTGGTGGGCCATTT
CGAAACAAAACGTTCGGCACGCACAGCAAAAACCATTATTACTGCTGCGC
CCCTCGTGCTCA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1029:18248..18909+

>mRNA_L-elsbetiae_contig1029.334.1 ID=mRNA_L-elsbetiae_contig1029.334.1|Name=mRNA_L-elsbetiae_contig1029.334.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig1029:18248..18909+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGCAACGACAACAAACACAGCATCACGCTCTTCTTCACGCACGCGA
TATTCAGACGAGACAGGCTCACGCCGGCAGGCAAGCAGCCTGTTTTCCCT
TTCCCCGTCTTCGATCCCCCTCCTCAACGAAGACAAACACAAACGACCGA
CACCTGAAACCCCTTGGTCCTTCTCTTACTCCTTCCAAACCCGCTGGAAG
ACGACCACAGCTAAACACACCCACAGCGCAGGCTTCAGAGGCTGACCGAG
CGCACGCGCACACACACGCGCACCATTCCCTCGTGGCCAAGCACGGATCG
CTGAGCATTTGGTGGGCCATTTCGAAACAAAACGTTCGGCACGCACAGCA
AAAACCATTATTACTGCTGCGCCCCTCGTGCTCAATGCAGCAACGACAAC
AAACACAGCATCACGCTCTTCTTCACGCACGCGATATTCAGACGAGACAG
GCTCACGCCGGCAGGCAAGCAGCCTGTTTTCCCTTTCCCCGTCTTCGATC
CCCCTCCTCAACGAAGACAAACACAAACGACCGACACCTGAAACCCCTTG
GTCCTTCTCTTACTCCTTCCAAACCCGCTGGAAGACGACCACAGCTAAAC
ACACCCACAGCGCAGGCTTCAGAGGCTGACCGAGCGCACGCGCACACACA
CGCGCACCATTCCCTCGTGGCCAAGCACGGATCGCTGAGCATTTGGTGGG
CCATTTCGAAACAAAACGTTCGGCACGCACAGCAAAAACCATTATTACTG
CTGCGCCCCTCGTGCTCA
back to top