mRNA_L-elsbetiae_contig10257.301.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10257.301.1
Unique NamemRNA_L-elsbetiae_contig10257.301.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10257.301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10257contigL-elsbetiae_contig10257:370..880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size511
Cds size453
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10257.301.1prot_L-elsbetiae_contig10257.301.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10257 371..823 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815255.5026762-UTR-L-elsbetiae_contig10257:369..3701622815255.5026762-UTR-L-elsbetiae_contig10257:369..370Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10257 370..370 +
1691682799.1992097-UTR-L-elsbetiae_contig10257:369..3701691682799.1992097-UTR-L-elsbetiae_contig10257:369..370Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10257 370..370 +
1622815255.5222523-UTR-L-elsbetiae_contig10257:823..8801622815255.5222523-UTR-L-elsbetiae_contig10257:823..880Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10257 824..880 +
1691682799.2264805-UTR-L-elsbetiae_contig10257:823..8801691682799.2264805-UTR-L-elsbetiae_contig10257:823..880Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10257 824..880 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815255.5129526-CDS-L-elsbetiae_contig10257:370..8231622815255.5129526-CDS-L-elsbetiae_contig10257:370..823Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10257 371..823 +
1691682799.2071207-CDS-L-elsbetiae_contig10257:370..8231691682799.2071207-CDS-L-elsbetiae_contig10257:370..823Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10257 371..823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10257.301.1

>prot_L-elsbetiae_contig10257.301.1 ID=prot_L-elsbetiae_contig10257.301.1|Name=mRNA_L-elsbetiae_contig10257.301.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=151bp
MVPRTSHPTITEAPVALETAAAAPNAATAPTPTPRLETTNKKCVRVTRGI
RRSWRVRLLGLINLPCGSLGIRVADSGLDIKSSKAPLILENGPLHGKLIR
KLAYHGVNKLLRGLLDTNCRHSVDDHIKPRKVHFGVSARHEANVVELLLE
*
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mRNA from alignment at L-elsbetiae_contig10257:370..880+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10257.301.1 ID=mRNA_L-elsbetiae_contig10257.301.1|Name=mRNA_L-elsbetiae_contig10257.301.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=511bp|location=Sequence derived from alignment at L-elsbetiae_contig10257:370..880+ (Laminarionema elsbetiae ELsaHSoW15)
CATGGTGCCCAGAACCTCCCATCCCACCATTACCGAAGCCCCGGTTGCCC
TGGAGACCGCGGCCGCGGCCCCGAATGCCGCCACCGCCCCCACGCCCACG
CCCAGACTGGAAACCACCAACAAAAAATGCGTGCGGGTCACTCGGGGCAT
CCGGCGCAGCTGGCGGGTCAGGCTGCTTGGTTTGATCAATCTCCCGTGCG
GTTCGCTCGGCATACGCGTTGCCGATAGTGGTCTCGACATCAAGTCGAGT
AAGGCCCCGCTGATTTTGGAGAATGGCCCTCTCCATGGAAAACTCATCAG
GAAGCTGGCGTATCATGGCGTCAACAAGCTGCTGCGGGGACTTCTGGATA
CCAACTGCCGACATTCGGTTGATGACCATATCAAACCCCGCAAAGTACAT
TTTGGGGTCAGCGCCCGGCACGAAGCGAACGTTGTTGAATTGCTTCTCGA
GTAGGTGCTTTTGGGCAGGGGTGACAGGCAACACCCACGTCTCCAGAGTA
GACCAAGCATC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10257:370..880+

>mRNA_L-elsbetiae_contig10257.301.1 ID=mRNA_L-elsbetiae_contig10257.301.1|Name=mRNA_L-elsbetiae_contig10257.301.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=906bp|location=Sequence derived from alignment at L-elsbetiae_contig10257:370..880+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGCCCAGAACCTCCCATCCCACCATTACCGAAGCCCCGGTTGCCCT
GGAGACCGCGGCCGCGGCCCCGAATGCCGCCACCGCCCCCACGCCCACGC
CCAGACTGGAAACCACCAACAAAAAATGCGTGCGGGTCACTCGGGGCATC
CGGCGCAGCTGGCGGGTCAGGCTGCTTGGTTTGATCAATCTCCCGTGCGG
TTCGCTCGGCATACGCGTTGCCGATAGTGGTCTCGACATCAAGTCGAGTA
AGGCCCCGCTGATTTTGGAGAATGGCCCTCTCCATGGAAAACTCATCAGG
AAGCTGGCGTATCATGGCGTCAACAAGCTGCTGCGGGGACTTCTGGATAC
CAACTGCCGACATTCGGTTGATGACCATATCAAACCCCGCAAAGTACATT
TTGGGGTCAGCGCCCGGCACGAAGCGAACGTTGTTGAATTGCTTCTCGAG
TAGATGGTGCCCAGAACCTCCCATCCCACCATTACCGAAGCCCCGGTTGC
CCTGGAGACCGCGGCCGCGGCCCCGAATGCCGCCACCGCCCCCACGCCCA
CGCCCAGACTGGAAACCACCAACAAAAAATGCGTGCGGGTCACTCGGGGC
ATCCGGCGCAGCTGGCGGGTCAGGCTGCTTGGTTTGATCAATCTCCCGTG
CGGTTCGCTCGGCATACGCGTTGCCGATAGTGGTCTCGACATCAAGTCGA
GTAAGGCCCCGCTGATTTTGGAGAATGGCCCTCTCCATGGAAAACTCATC
AGGAAGCTGGCGTATCATGGCGTCAACAAGCTGCTGCGGGGACTTCTGGA
TACCAACTGCCGACATTCGGTTGATGACCATATCAAACCCCGCAAAGTAC
ATTTTGGGGTCAGCGCCCGGCACGAAGCGAACGTTGTTGAATTGCTTCTC
GAGTAG
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