mRNA_L-elsbetiae_contig1023.280.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1023.280.1
Unique NamemRNA_L-elsbetiae_contig1023.280.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1023.280.1 vs. uniprot
Match: D7FIK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK1_ECTSI)

HSP 1 Score: 317 bits (812), Expect = 4.710e-98
Identity = 195/272 (71.69%), Postives = 211/272 (77.57%), Query Frame = 2
Query:  377 YVILDYTVPGLGFVADILTSFLQWVENNPGLGAIAFAAVYIFTTVAFIPGSLLTLGAGLVFGRALXXXXXXXXXXXXXXXXXXXXXILAFLLGRFVLQDQAQGLFNKFKVLKAVDRAIETQGLKLVILLRLSPVVPFSAFNYVMGVTAVKFRDYALGCVGMVPGTAAFVFIGTTASGLLGDADEEXXXXXXXXXXXAVQLIVLIVGGIATVIAVILISIYSKRALNKVLAED-AEAENNEARVVDGSALTPDDNIEAAQG*RDARTRLTVRL 1189
            YVILDYTVPGLGFVAD LTSFL+WVE+NPGLGA+AFA VY+FTTV FIPGSLLTLGAGLVFGRAL                     ILAFLLGRFVLQ+QAQGLFNKFKVLKAV+RAI++QGLKLVILLRLSPVVPFSAFNYVMGVT V FRDYA+GCVG +PGT AFVFIGTTASGLLGD D E XXXXXXXXX  VQLIV IVGGIATVIAV+LISIY+KRALNKVL ED  E E  E  +  G+    +    A  G R A     VR+
Sbjct:   57 YVILDYTVPGLGFVADTLTSFLEWVEDNPGLGALAFALVYVFTTVCFIPGSLLTLGAGLVFGRALGTGLGILVGSLAVLAGATVGSILAFLLGRFVLQEQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFRDYAIGCVGFIPGTVAFVFIGTTASGLLGD-DSEEXXXXXXXXXGTVQLIVGIVGGIATVIAVVLISIYAKRALNKVLEEDRVEQEALEMGLESGNGGMNNMEQSAQDGARPAVVEHAVRM 327          
BLAST of mRNA_L-elsbetiae_contig1023.280.1 vs. uniprot
Match: A0A7S3YEX9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEX9_HETAK)

HSP 1 Score: 273 bits (697), Expect = 1.640e-81
Identity = 188/282 (66.67%), Postives = 224/282 (79.43%), Query Frame = 2
Query:  269 YKTMPTKQGEAIATPPT--QQEKLTKAGLLFGLVVVVGYVILDYTVPGLGFVADILTSFLQWVENNPGLGAIAFAAVYIFTTVAFIPGSLLTLGAGLVFGRALXXXXXXXXXXXXXXXXXXXXXILAFLLGRFVLQDQAQGLFNKFKVLKAVDRAIETQGLKLVILLRLSPVVPFSAFNYVMGVTAVKFRDYALGCVGMVPGTAAFVFIGTTASGLLGDADE----------EXXXXXXXXXXXAVQLIVLIVGGIATVIAVILISIYSKRALNKVLAEDAE 1078
            YK   TK   ++    T  ++ KL K GLL  LV ++ YV+LDYT+P LG V  ILTSFL WVE +PG G +AFA+VY+ TTV FIPGS+LTLGAGLVFGRALXXXXXXXXXXXXXXXXXXXXX +AFLLGR+VLQD AQ LFNKF VLKAVD+AIE +GL+LVILLRLSPV+PFSAFNYVMG+T V FR Y LGCVGM+PGT A+VFIGT+A+GLLGDAD+           XXXXXXXXXX  V ++VL+VG  ATV+AV+LI++ S+RAL +VL ++AE
Sbjct:   25 YKKETTKGSGSLGGEKTGDRKNKLIKFGLLSLLVGIIIYVVLDYTLPSLGHVNRILTSFLLWVEEHPGEGVVAFASVYVLTTVLFIPGSILTLGAGLVFGRALXXXXXXXXXXXXXXXXXXXXXXIAFLLGRYVLQDSAQKLFNKFSVLKAVDKAIENEGLRLVILLRLSPVIPFSAFNYVMGLTRVMFRQYVLGCVGMLPGTVAYVFIGTSAAGLLGDADDGSQESEXXXXXXXXXXXXXXXRLVNIVVLVVGAAATVLAVVLITVASRRALRRVLMKEAE 306          
BLAST of mRNA_L-elsbetiae_contig1023.280.1 vs. uniprot
Match: A0A7S2Y1P9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1P9_9STRA)

HSP 1 Score: 251 bits (641), Expect = 2.690e-73
Identity = 143/269 (53.16%), Postives = 185/269 (68.77%), Query Frame = 2
Query:  320 QQEKLTKAGLLFGLVVVVGYVILDYTVPGLGFVADILTSFLQWVENNPGLGAIAFAAVYIFTTVAFIPGSLLTLGAGLVFGRALXXXXXXXXXXXXXXXXXXXXXILAFLLGRFVLQDQAQGLFNKFKVLKAVDRAIETQGLKLVILLRLSPVVPFSAFNYVMGVTAVKFRDYALGCVGMVPGTAAFVFIGTTASGL---------LGDADEEXXXXXXXXXXXAVQLIVLIVGGIATVIAVILISIYSKRALNKVLAEDAEAENNEAR 1099
            ++EK+ K  L   LV ++ YVI+DY+VP LG V  +L+ FL WVE+NP  G  AFA VY+F TVAFIPGSLLTLGAGLVFGRAL                     I+AF+LGR+VLQD AQ LFNKFK+++AVD+AIE+QGLKL +LLRLSPVVPF+AFNY+MG+TA+  +DY +GC+G++PGT A+VFIG++ASG+           D  ++            V LIV+IVG IATVIAV LIS Y+K+ALN++L E    EN + +
Sbjct:   20 KKEKIRKLCLGLVLVGLIIYVIVDYSVPSLGNVNIVLSDFLAWVEDNPIEGVFAFACVYMFCTVAFIPGSLLTLGAGLVFGRALGIGRGVALGSFAVILGASIGAIIAFILGRYVLQDTAQVLFNKFKIMRAVDKAIESQGLKLCLLLRLSPVVPFNAFNYIMGLTAISLKDYTIGCLGIIPGTVAYVFIGSSASGIGDMKGNDEEQNDNTKDADGEESSSDNDTVFLIVIIVGAIATVIAVFLISWYAKKALNRILNEVELEENQDGK 288          
BLAST of mRNA_L-elsbetiae_contig1023.280.1 vs. uniprot
Match: A0A6H5JID7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JID7_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 1.270e-46
Identity = 98/232 (42.24%), Postives = 145/232 (62.50%), Query Frame = 2
Query:  431 TSFLQWVENNPGLGAIAFAAVYIFTTVAFIPGSLLTLGAGLVFGRALXXXXXXXXXXXXXXXXXXXXXILAFLLGRFVLQDQAQGLFNKFKVLKAVDRAIETQGLKLVILLRLSPVVPFSAFNYVMGVTAVKFRDYALGCVGMVPGTAAFVFIGTTASGLLGDADEEXXXXXXXXXXXAVQLIVLIVGGIATVIAVILISIYSKRALNKVLAE---DAEAENNEARVVDGSA 1117
            TSF +W+E+NP  G + FA ++  +T+ F+PG LLT+GAG+ FGRAL                     ++AF LGR+VL +QAQ    ++++L AV+ AIE  G+K++ILLRLSP+VPFS FN++ G+T V  RDY LG VG+VPGT AFV+IG + +G + +  E             +++  LIVG +A V+A++ ++IY++RAL + L E   DA A+  E    +GSA
Sbjct:   95 TSF-EWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNE-QEAMNSGEADRTECIIRMATLIVGAVAAVLAIVAVTIYARRALKQALVESELDANADKEEKAEHEGSA 324          
BLAST of mRNA_L-elsbetiae_contig1023.280.1 vs. uniprot
Match: A0A7S4JVV3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JVV3_9STRA)

HSP 1 Score: 175 bits (443), Expect = 1.100e-45
Identity = 102/254 (40.16%), Postives = 153/254 (60.24%), Query Frame = 2
Query:  326 EKLTKAGLLFGLVVVVGYVILDYTVPGLGFVADILTSFLQWVENNPGLGAIAFAAVYIFTTVAFIPGSLLTLGAGLVFGRALXXXXXXXXXXXXXXXXXXXXXILAFLLGRFVLQDQAQGLFNKFKVLKAVDRAIETQGLKLVILLRLSPVVPFSAFNYVMGVTAVKFRDYALGCVGMVPGTAAFVFIGTTASGL--LGDADEEXXXXXXXXXXXAVQLIVLIVGGIATVIAVILISIYSKRALNKVLAEDAEA 1081
            +KL  A +L G +V   +VI+D T  G  ++ D + +FL+W+E NP  G   F  VY+  TV F+PG +LTLGAG VF  A                      +LAFL+ R++L++ A GL  KF + +A+D+A+E +GLK++ILLRLSPV+PF+A NYV GVTAV F+DY+L    M+PGT  +VF+G +A  L  +G + +            A+ +  ++VG +  ++AV L S Y+K+ LNK+L ++ EA
Sbjct:   17 KKLVLALVLIGFIV---FVIIDSTTNG--YIKDGIQTFLRWIEENPIEGFFMFMGVYVLATVLFVPGLILTLGAGYVFSNAFGTGLGLFVGTISVFVGASLGSMLAFLISRYILREWAVGLTEKFPIFRAIDQALEEKGLKIIILLRLSPVIPFNALNYVCGVTAVSFKDYSLALFAMLPGTILYVFLGASAQSLATIGSSTDSK----------ALTISTVVVGVVLGIVAVALSSRYAKKELNKILDQEEEA 255          
BLAST of mRNA_L-elsbetiae_contig1023.280.1 vs. uniprot
Match: A0A0G4EY60_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EY60_VITBC)

HSP 1 Score: 172 bits (436), Expect = 4.420e-44
Identity = 109/266 (40.98%), Postives = 159/266 (59.77%), Query Frame = 2
Query:  359 LVVVVGYVILDYTVPGLGFVADILTSFLQWVENNPGLGAIAFAAVYIFTTVAFIPGSLLTLGAGLVFGRALXXXXXXXXXXXXXXXXXXXXXILAFLLGRFVLQDQAQGLFNKFKVLKAVDRAIETQGLKLVILLRLSPVVPFSAFNYVMGVTAVKFRDYALGCVGMVPGTAAFVFIGTT---ASGLLGDADEEXXXXXXXXXXXAVQLIVLIVGGIATVIAVILISIYSKRALNKVLAEDAEAENNEARVVDGSALTPDDNIEAA 1147
            ++ ++ Y+I+D T      VA+ L  F +WV++NP  G +A+ AVY+  TVAFIPGS+LTLGAG  F  A                       LAF  GRF+ +   QGL +KFKV++A+D+  ETQGLKL ILLRLSPVVPFSAFNY+MG T  ++RDYA+G +G++PGTA +V+IG     A    G A+               Q + L VG +AT IAV +++ ++++AL ++  ++A AE ++A   +G   TP  +++ A
Sbjct:   62 IIAIIVYIIIDSTTGQR--VAEGLDIFKEWVQDNPATGILAYMAVYMVCTVAFIPGSILTLGAGFTFVCAFGNGPGMAAGIGAVLVGAFVGAQLAFFCGRFLFKSWVQGLTDKFKVMRAIDKVFETQGLKLNILLRLSPVVPFSAFNYIMGGTRTRYRDYAIGTLGIIPGTALYVYIGAIPAFAGACSGKAEGSGHWS---------QWVFLAVGLVATFIAVFIVTWFARKALREITEKEA-AEASKADGKEG-VETPGPDLDGA 314          
BLAST of mRNA_L-elsbetiae_contig1023.280.1 vs. uniprot
Match: W7TSR1_9STRA (SNARE associated Golgi protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSR1_9STRA)

HSP 1 Score: 168 bits (426), Expect = 9.030e-43
Identity = 102/259 (39.38%), Postives = 155/259 (59.85%), Query Frame = 2
Query:  338 KAGLLFGLVVVVGYVILDYTVPGLGFVADILTSFLQWVENNPGLGAIAFAAVYIFTTVAFIPGSLLTLGAGLVFGRALXXXXXXXXXXXXXXXXXXXXXILAFLLGRFVLQDQAQGLFNKFKVLKAVDRAIET-QGLKLVILLRLSPVVPFSAFNYVMGVTAVKFRDYALGCVGMVPGTAAFVFIGTTASGLLGDADEEXXXXXXXXXXXAVQLIVLIVGGIATVIAVILISIYSKRALNKVLAEDAEAENNEARVVDG 1111
            + G+L   +VVV  + +DY+  G   VA +L++FL+WV  +P  GA+AFAAVY  + V F+PG+ LTLG G +FG+AL                     + AF LGR++L + AQ   N++ +L+A+D ++   +GLK+V+LLRLSP+VPF+A NY+M VT+V  + Y LG VGMVP   A+ F+GTTA GL  +A  E            V++ + +VG +A V AV ++S +++  L K+  ++ E    E R V+G
Sbjct:   51 QGGILVLWLVVVILIAVDYSPAGHRHVARVLSTFLEWVGRHPLRGAMAFAAVYALSVVFFVPGAALTLGGGFLFGQALGVGPGTVFASLAVFVGASAGAVAAFSLGRWLLHETAQSTLNRYTILRALDASLHGHRGLKIVLLLRLSPLVPFTALNYMMSVTSVSLKTYTLGLVGMVPAVVAYSFLGTTAGGLTREAGGESSVER------GVKIAMYVVGAVALVAAVGVLSRFAREELRKI-QDEGEGARGEGRDVEG 302          
BLAST of mRNA_L-elsbetiae_contig1023.280.1 vs. uniprot
Match: A0A7S2A6Q3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6Q3_TRICV)

HSP 1 Score: 161 bits (408), Expect = 2.170e-40
Identity = 92/242 (38.02%), Postives = 140/242 (57.85%), Query Frame = 2
Query:  347 LLFGLVVVVGYVILDYTVPGLGFVADILTSFLQWVENNPGLGAIAFAAVYIFTTVAFIPGSLLTLGAGLVFGRALXXXXXXXXXXXXXXXXXXXXXILAFLLGRFVLQDQAQGLFNKFKVLKAVDRAIETQGLKLVILLRLSPVVPFSAFNYVMGVTAVKFRDYALGCVGMVPGTAAFVFIGTTASGLLGDADEEXXXXXXXXXXXAVQLIVLIVGGIATVIAVILISIYSKRALNKVLAED 1072
            +L GL+V   ++I+D    G  FV   +   LQW+E NP  G   F AVY   TV F+PGSLLTLG+G VF  +                      ++AF+LGR++L+D  + L  K+ V +A+D+A+E +GL+++ILLRLSP++PF+A NY+ GVT+V F+ YA     ++PGT  FVF+G +A  L+   +              V +  ++VG +  VIA+ L S Y+K+ LNK+L ++
Sbjct:   52 VLVGLIV---FIIVDSVTHG--FVKGAIEGLLQWIEENPIRGLFVFMAVYFVATVLFVPGSLLTLGSGFVFAESFGLGFGVLLATLAVFVGATLGALVAFILGRYLLRDWVENLTKKYNVFRAIDKALEEKGLRIMILLRLSPIIPFNALNYICGVTSVSFKHYAWANFAILPGTILFVFLGASAGSLVDSGN--------GGDTPVVTIATIVVGVVFGVIAIALTSRYAKKELNKILEQE 280          
BLAST of mRNA_L-elsbetiae_contig1023.280.1 vs. uniprot
Match: A0A7S4W131_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W131_9STRA)

HSP 1 Score: 161 bits (407), Expect = 2.820e-40
Identity = 106/301 (35.22%), Postives = 166/301 (55.15%), Query Frame = 2
Query:  299 AIATPPTQQEK-LTKAGLLFGLVVV--VGYVILDY--TVPGLGFVADILTSFLQWVENNPGLGAIAFAAVYIFTTVAFIPGSLLTLGAGLVFGRALXXXXXXXXXXXXXXXXXXXXXILAFLLGRFVLQDQAQGLFNKFKVLKAVDRAIETQGLKLVILLRLSPVVPFSAFNYVMGVTAVKFRDYALGCVGMVPGTAAFVFIGTTASGLLGDADEEXXXXXXXXXXXAVQLIVLIVGGIATVIAVILISIYSKRALNKVLAE------------DAEAENNEARVVDG--SALTPDDNIEA 1144
            A  TPPT +   L K G  FGL++V  + YVI+D   T   +  VAD    FL W+E+NP  G  AF  VYI  ++ FIPG +LTLGAG VF  AL                       +FL+GR++L+D    L  K  + +A+D A++ +GL+++ILLR+SP+VPF+ FNYV GVT++  RDYA+G +G++PGT  ++ +G++A  L+  +               V++I +++G +  V+ V   + Y+K+ LNK+L++            D ++ N +     G  S  T +D++EA
Sbjct:   15 ATQTPPTSRRAFLFKIG--FGLILVGFIIYVIIDLATTKNTMRIVAD----FLDWIEDNPAAGVFAFIGVYIIASIFFIPGLILTLGAGFVFANALGLGVGIFLATVAVFFGAFFGACASFLIGRYLLRDCVGKLTKKRVIFEAIDAALKDKGLRIMILLRVSPLVPFNVFNYVAGVTSISLRDYAIGMIGILPGTLLYILLGSSAGSLVDSSSS--------GNDSTVRIISIVLGIVFAVLGVYATTYYAKKELNKILSQRREVNAAASTEGDVDSSNGKGASTIGNDSVTTDEDDVEA 301          
BLAST of mRNA_L-elsbetiae_contig1023.280.1 vs. uniprot
Match: A0A7S3XRA4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRA4_HETAK)

HSP 1 Score: 155 bits (393), Expect = 1.050e-39
Identity = 78/180 (43.33%), Postives = 118/180 (65.56%), Query Frame = 2
Query:  377 YVILDYTVPGLGFVADILTSFLQWVENNPGLGAIAFAAVYIFTTVAFIPGS--LLTLGAGLVFGRALXXXXXXXXXXXXXXXXXXXXXILAFLLGRFVLQDQAQGLFNKFKVLKAVDRAIETQGLKLVILLRLSPVVPFSAFNYVMGVTAVKFRDYALGCVGMVPGTAAFVFIGTTASGL 910
            Y++LDY + GLG+    +  FL WV  +P  G  AFAAVYI  T+   PG+   LT+ +G++FG+A                      I+ F +GR +L+++AQ LFN++K+LKA+D AIE +GLKL+ LLRLSPVVP++ FNY++GVT V+ +D+ +GC+G++P TAA  ++G +A+ L
Sbjct:   15 YIVLDYNLEGLGYFQRAMVDFLDWVNGHPVEGIFAFAAVYILITLPGFPGAGIALTISSGVLFGQAFGEGMGILLATTSVFIGGSIGGIMCFKIGRLLLREKAQKLFNRYKLLKAIDMAIEKEGLKLIFLLRLSPVVPWATFNYLLGVTRVRTKDFVVGCLGLIPITAAQAYLGISAASL 194          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1023.280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIK1_ECTSI4.710e-9871.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3YEX9_HETAK1.640e-8166.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2Y1P9_9STRA2.690e-7353.16Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6H5JID7_9PHAE1.270e-4642.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4JVV3_9STRA1.100e-4540.16Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A0G4EY60_VITBC4.420e-4440.98Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
W7TSR1_9STRA9.030e-4339.38SNARE associated Golgi protein n=2 Tax=Nannochloro... [more]
A0A7S2A6Q3_TRICV2.170e-4038.02Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4W131_9STRA2.820e-4035.22Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S3XRA4_HETAK1.050e-3943.33Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1023contigL-elsbetiae_contig1023:24227..28951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score313.2
Seed ortholog evalue1.4e-82
Seed eggNOG ortholog2880.D7FIK1
KEGG rclassRC00046
KEGG koko:K00486
KEGG ReactionR01960
KEGG Pathwayko00380,ko01100,map00380,map01100
KEGG ModuleM00038
Hectar predicted targeting categoryother localisation
EggNOG free text desc.canonical Wnt signaling pathway involved in osteoblast differentiation
EggNOG OGsCOG0398@1,KOG3140@2759
EC1.14.13.9
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons4
Model size2431
Cds size921
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1023.280.1prot_L-elsbetiae_contig1023.280.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1023 24462..27676 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815253.6937783-UTR-L-elsbetiae_contig1023:24226..244611622815253.6937783-UTR-L-elsbetiae_contig1023:24226..24461Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1023 24227..24461 +
1691682797.9916377-UTR-L-elsbetiae_contig1023:24226..244611691682797.9916377-UTR-L-elsbetiae_contig1023:24226..24461Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1023 24227..24461 +
1622815253.746591-UTR-L-elsbetiae_contig1023:27676..289511622815253.746591-UTR-L-elsbetiae_contig1023:27676..28951Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1023 27677..28951 +
1691682798.0480223-UTR-L-elsbetiae_contig1023:27676..289511691682798.0480223-UTR-L-elsbetiae_contig1023:27676..28951Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1023 27677..28951 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815253.7036312-CDS-L-elsbetiae_contig1023:24461..246231622815253.7036312-CDS-L-elsbetiae_contig1023:24461..24623Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1023 24462..24623 +
1691682798.0079916-CDS-L-elsbetiae_contig1023:24461..246231691682798.0079916-CDS-L-elsbetiae_contig1023:24461..24623Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1023 24462..24623 +
1622815253.7173285-CDS-L-elsbetiae_contig1023:26078..262941622815253.7173285-CDS-L-elsbetiae_contig1023:26078..26294Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1023 26079..26294 +
1691682798.0183735-CDS-L-elsbetiae_contig1023:26078..262941691682798.0183735-CDS-L-elsbetiae_contig1023:26078..26294Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1023 26079..26294 +
1622815253.7266834-CDS-L-elsbetiae_contig1023:26736..269301622815253.7266834-CDS-L-elsbetiae_contig1023:26736..26930Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1023 26737..26930 +
1691682798.0274973-CDS-L-elsbetiae_contig1023:26736..269301691682798.0274973-CDS-L-elsbetiae_contig1023:26736..26930Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1023 26737..26930 +
1622815253.7369976-CDS-L-elsbetiae_contig1023:27327..276761622815253.7369976-CDS-L-elsbetiae_contig1023:27327..27676Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1023 27328..27676 +
1691682798.0375872-CDS-L-elsbetiae_contig1023:27327..276761691682798.0375872-CDS-L-elsbetiae_contig1023:27327..27676Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1023 27328..27676 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1023.280.1

>prot_L-elsbetiae_contig1023.280.1 ID=prot_L-elsbetiae_contig1023.280.1|Name=mRNA_L-elsbetiae_contig1023.280.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=307bp
MSAMGSSNASNYKTMPTKQGEAIATPPTQQEKLTKAGLLFGLVVVVGYVI
LDYTVPGLGFVADILTSFLQWVENNPGLGAIAFAAVYIFTTVAFIPGSLL
TLGAGLVFGRALGTGLGVLVGTLAVLVGATVGAILAFLLGRFVLQDQAQG
LFNKFKVLKAVDRAIETQGLKLVILLRLSPVVPFSAFNYVMGVTAVKFRD
YALGCVGMVPGTAAFVFIGTTASGLLGDADEEEEEDSGDGSNSAVQLIVL
IVGGIATVIAVILISIYSKRALNKVLAEDAEAENNEARVVDGSALTPDDN
IEAAQG*
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mRNA from alignment at L-elsbetiae_contig1023:24227..28951+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1023.280.1 ID=mRNA_L-elsbetiae_contig1023.280.1|Name=mRNA_L-elsbetiae_contig1023.280.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4725bp|location=Sequence derived from alignment at L-elsbetiae_contig1023:24227..28951+ (Laminarionema elsbetiae ELsaHSoW15)
GCAGAACCCGCGAGCTGGGGCGGTAGCAGGCACAGCCGCGCACCCTTCCT CCTCGCGCTTCACACACAATCGCACTCGAGCACTCGAGATACACCACCAC CACCATCACCACCACTACCACCACGACCACCACAACTTCAGCTCCCTCTC CCTCCATTTCCAACGAAACAAGCGCCCTCTCTTTGCACTTGCACTGCTAC ATATACGGAGTACGTCGCAGGTCAGACACCGCAGCATGTCGGCCATGGGA TCGTCCAACGCGTCCAACTACAAGACCATGCCAACGAAACAAGGAGAGGC GATAGCCACACCGCCAACCCAGCAGGAAAAGCTCACCAAAGCTGGATTGC TCTTCGGGCTCGTCGTGGTCGTTGGTTATGTCATCCTTGACTACACGGTG AGTGGGTCGTGTAGAGGGCAGCCCCAGCCAGCTTTGTGCGAGGTTATTAG ACACAAAACTAAGCACCAGGAGTTACAGCCCATAATCTTGCCATGCGATA TGATGGCCAGTTGTGCCTTGCGAGGATAACAGGCTGGGCGTTTCTTTAAA GCACGATGCCCACTTGACTAAATGTACCCAAGGAACCGCGACTCGTCGAC CACTGGATTACGCATCGCCGGCCCGCGCCACAACTGGCACTTTTGTGTTA ACGCGAGGGGTTCGAATCTTATCCTGCGCATTTTTCCTTGTCAATAAATA GATGTAACCTCCACAATCATCGTGCTTTTCAACGAGTGCTGCCCGAGAGA CATAAAACACTTGGAATCGTTATAGAATCGGATACATTAGATGGATAGAT TCACGTGCTGCTGTACGATAGGAGTATTACCAATGCTCCGACGAGGATCC TTGCAAATTGAAATGCACAGCAGTGGTATAGATATTTTATTGTCTATCGT GCCCGTCTTCTATTTCTGTCCTGGACACAGGTACAGTTAGTGGTATCTCC CCTACTCGTAGGTAGTGTTAACGGGCTAACAAGCAAGTACAGTATCGGTA TGTTGTTTCATCTTCCCATGTTCTTTTTCTATCCCGGGCACAGGTACAGT AGTGATAATCCTCCTGCTAGTATCACCCGGCTCAACAAGACAGGCAGTAA TGGTTGCCATCTTATGTCGGAATGTATTCATGGGGGGAGTAATAGAGGGT GCGTTATGAGACGAGAAAGGTTTAAGATTAGAGGACTATTCCGTGGAGAT GACTGGGTTTATGTTGCTAATGGGTAGCAGAGCAGTAGTCGGGGCGGTCC ACTCTGAAAGAGCCCGTGAGCGAGAAAACGTGTACTATTGTATTGTGTCA GCAAAAACCACCCGCACGCACGCATGCGATAGACAGCAGCGAGGATCGGC CATGTAGCACTCGGGGGCTTTGGGCACGGGGGCTTTGGGCACGGGGTCTT CGGCTAAGCATCTCATATCAGACCCTTGAAGAAAAATAGTCGGAGCACAG CAGGAGTGGTGCACAGCAGTACATGGCTTCGATCTGGAGAATATTGTGTT TTCCAAACCCCTCACAACGCCCAATGTTCTCCCAATCTGGTGGGGTTTTT AAAAATAAACAATGAATCAAATGGTGGGGTTTTTGCTTCGCGAAAAAGAG GACACACACTGCTGTGTGAAACAGCCAAAACAGCAGACACGCGAAGATAC CCAGGATGCTTCCCTTCAACAAAACAGTTCCGAAGACAGCCGAACGGGTC CCGCCCCCCTTGAACTTGCGATGCCAAATACACATCTGTTTGTATTGATT TAAAAGAGCGCAATTCCCTGACTACCAGTCTCTTCCCTCAACTTCAAGTC GGCGGGGCAGCCTTAAGCTTCATTTCCCCTAATTTATTGATGTACCTTCC AGGTCCCTGGGCTTGGTTTCGTTGCCGATATCCTCACGTCTTTCCTCCAG TGGGTCGAGAACAACCCTGGACTAGGTGCGATCGCCTTCGCCGCAGTGTA CATCTTTACAACCGTGGCCTTCATTCCCGGGTCCCTTCTCACGCTTGGCG CCGGGCTGGTGTTTGGTCGCGCACTGGGCACTGGCTTGGGCGTGCTGGTC GGGACTCTGGCAGTGCTGGTGAGTTGTCAATCGCAGGAAGACGGTATGTA TGCATACAAAGCGGTGGTTTCCCGAATGTTGAAATAATTTGTGTCAGTAG GTGGAAGCAACTATGGAATTTTCCCACGATTGTTTGTTTCTGTGGGATAA TGAGAGGGATAGCTGCGCGGCTATTGAATGAAATGGTGCATCGATATAAA CGATCAATTATTATGTATATACCTTCACTGGTAAAAAATAAAGTACATTC ACTGGTCACCTCGATAATTGTAGGTCAGGCAAAGAGCGAGAGGAAAATGC CAACACCCCCCCATAGAACAGCAAAACACAATCTTGGGGGCGAGTTTCGG ACACCACAACGACGATTTTGGAGTTGGATCAAATGGGGGCTTGTTGAAAG AAGCTTTTCGTTTCCTGACCTCCCGCGCAATCCTTCTCCCGGATCTTCTT GAGACCGCAGGTTGGTGCTACAGTCGGGGCCATCTTGGCCTTCCTGCTGG GCCGTTTCGTGCTTCAAGATCAGGCGCAAGGGCTGTTTAACAAGTTTAAG GTTCTCAAGGCCGTCGACCGGGCGATCGAGACGCAGGGATTAAAGCTGGT GATTCTCCTCCGCCTCTCTCCCGTCGTGCCTTTCAGCGCCTTCAACTACG TCATGTGAGATCATTGAAAACAGGCATTGGCTCTTCCAAAATGCGATATT TTAGGGCATTTATTTTGCTCTCTGGTTTGGTACGGGTATACGACGAGATG CGGGGAGTCACGCGATAGGTTTCGTGTCTGGCACTTATTTGCGGTGTTGC TCAGCTCACTGCAAAAGCGAAAGCGTTACACGCGACAATGGCTAGGCGAG GAATCCTTCGAACTTATTAACGCAATCGGCCGTGTGACCTACAGCAAAAA GCAGAGCGCCCCGAAGCGCATGGAAAAGGCGCCACAAGCGTATCTGAGAG AGGCCCCTCTTTCTCCCCATGTAGCACAGCATATAGCCGCGACTCACTTA CGCGCTCTTTTTGCAATGCCTTCTTGTCGTCCGGCTCTGGTTCTTCCTCA GGGGCGTAACGGCGGTCAAGTTCCGAGACTACGCCCTTGGCTGCGTCGGC ATGGTCCCCGGCACGGCGGCGTTCGTCTTCATCGGCACCACGGCGTCGGG TCTCTTGGGAGACGCCGACGAGGAGGAGGAAGAGGACTCCGGGGACGGGA GTAACTCCGCGGTACAGCTCATCGTTCTCATCGTGGGGGGGATCGCTACC GTAATCGCTGTCATCCTGATCAGCATCTACTCCAAGCGCGCCCTGAACAA GGTGCTGGCGGAGGACGCGGAAGCCGAGAACAATGAAGCGCGGGTCGTAG ACGGCTCGGCGTTGACCCCTGATGATAACATCGAAGCGGCCCAGGGTTAA CGTGATGCACGCACAAGACTAACCGTTCGTCTAATAATGCACATCGTCGT TGTGTGGTACTGTAGCGTGATAGAAGTTTTTAATCGGCGGCTTCGACTTG TTGTTATCCTGGATGTTGTTGTTGCTTGTGCGCTCCGCGGTATTTCACGC TTAGCGGTGTTCAATGCCCCTTGCGTAATATTTCATTTTCTGGCGTCTGA TGTGCTTGCAGCAGCTGCTATTTAGTTTGTTTTTTACCACCATCGCCCAT TTCGTGGCGCGTTGGATCGTTCGTTGTTGTCTTATGTGACAGTTTTTCGA TATCGAAACATTTGACTGAAGAATATACTTTCGTCTGATAGTGTTTTCCG TGTAAAATTATGTCTGCGTCGTCATTATTAATGTTGGGGTTGAGCTCTAG AAAGTCGGGGCCGTGCGTTTGGGTGTGAGGGCCTGTGATCTACGGAGTCA TCGGGTAGGTGACGTTGTACACAGCAGGAGTAAATATATACATATTTTGT ACATGTCCATGGTTGAATTTAGTCGGGCGGACAGGTAGTATGTGATTGAA GTACGCCGCACTTCGACGGAATCATTTATTTTTCATCTCCTCTATAAGAA GAATGGTGTCGAAAGTCCGTTAAACGTGCGCACGTGTGGGCTGGAATGGC GCGCTTCATGCATGAGTCCTTGTATCATAGATACTACAAGAGTGCGTGTG GAACACGAAAAACGCCGGCTAGCGAGAACAGCAGTTGATTATAATCTGTT TAGTATGCCGCGTGTGGTGACGGCTGTGCAGCGGAGATCAAAACAACCAA AGCCGTAATCGGCTTTGTGCGATGTGTGCAAGAACAGTTGATATTCGAGT CTTAGACTTCATGTTTGTACAGCAACGATGCATTAGTGAGACATTTGTGT AGGTGATCTTCCTCGCAGACACCACGCACTCTGAATTGTACCAAATCGGT TCTGACAGTGCTCTGAATTTTGTAGTCAAAGTGGCGACGTTCCTGCCTCG ATACTGGTCGTAATGTGGTGTTGTATGCAGTCTATAGTATGCAGATGATA ATTACAGCAAGCTGCGCCGATGGGCAAAGACGAACGAAGTCTTGTAGCAA TCCCGCTTACTAGCATCTTGACTCTTAAGTCACATAATGCGACGTGTTCC TATCATAGAAGTAGTTTTGACAACATCAACACGTCACGGAGGGTTTCTCC CCGGAATAGATACATGTGGTTTGATCTGGCAGAGACTTGCAGGGGAGATG GTGATTTTTTTTCATATTCGGCCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1023:24227..28951+

>mRNA_L-elsbetiae_contig1023.280.1 ID=mRNA_L-elsbetiae_contig1023.280.1|Name=mRNA_L-elsbetiae_contig1023.280.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1842bp|location=Sequence derived from alignment at L-elsbetiae_contig1023:24227..28951+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGGCCATGGGATCGTCCAACGCGTCCAACTACAAGACCATGCCAAC
GAAACAAGGAGAGGCGATAGCCACACCGCCAACCCAGCAGGAAAAGCTCA
CCAAAGCTGGATTGCTCTTCGGGCTCGTCGTGGTCGTTGGTTATGTCATC
CTTGACTACACGATGTCGGCCATGGGATCGTCCAACGCGTCCAACTACAA
GACCATGCCAACGAAACAAGGAGAGGCGATAGCCACACCGCCAACCCAGC
AGGAAAAGCTCACCAAAGCTGGATTGCTCTTCGGGCTCGTCGTGGTCGTT
GGTTATGTCATCCTTGACTACACGGTCCCTGGGCTTGGTTTCGTTGCCGA
TATCCTCACGTCTTTCCTCCAGTGGGTCGAGAACAACCCTGGACTAGGTG
CGATCGCCTTCGCCGCAGTGTACATCTTTACAACCGTGGCCTTCATTCCC
GGGTCCCTTCTCACGCTTGGCGCCGGGCTGGTGTTTGGTCGCGCACTGGG
CACTGGCTTGGGCGTGCTGGTCGGGACTCTGGCAGTGCTGGTCCCTGGGC
TTGGTTTCGTTGCCGATATCCTCACGTCTTTCCTCCAGTGGGTCGAGAAC
AACCCTGGACTAGGTGCGATCGCCTTCGCCGCAGTGTACATCTTTACAAC
CGTGGCCTTCATTCCCGGGTCCCTTCTCACGCTTGGCGCCGGGCTGGTGT
TTGGTCGCGCACTGGGCACTGGCTTGGGCGTGCTGGTCGGGACTCTGGCA
GTGCTGGTTGGTGCTACAGTCGGGGCCATCTTGGCCTTCCTGCTGGGCCG
TTTCGTGCTTCAAGATCAGGCGCAAGGGCTGTTTAACAAGTTTAAGGTTC
TCAAGGCCGTCGACCGGGCGATCGAGACGCAGGGATTAAAGCTGGTGATT
CTCCTCCGCCTCTCTCCCGTCGTGCCTTTCAGCGCCTTCAACTACGTCAT
GTTGGTGCTACAGTCGGGGCCATCTTGGCCTTCCTGCTGGGCCGTTTCGT
GCTTCAAGATCAGGCGCAAGGGCTGTTTAACAAGTTTAAGGTTCTCAAGG
CCGTCGACCGGGCGATCGAGACGCAGGGATTAAAGCTGGTGATTCTCCTC
CGCCTCTCTCCCGTCGTGCCTTTCAGCGCCTTCAACTACGTCATGGGCGT
AACGGCGGTCAAGTTCCGAGACTACGCCCTTGGCTGCGTCGGCATGGTCC
CCGGCACGGCGGCGTTCGTCTTCATCGGCACCACGGCGTCGGGTCTCTTG
GGAGACGCCGACGAGGAGGAGGAAGAGGACTCCGGGGACGGGAGTAACTC
CGCGGTACAGCTCATCGTTCTCATCGTGGGGGGGATCGCTACCGTAATCG
CTGTCATCCTGATCAGCATCTACTCCAAGCGCGCCCTGAACAAGGTGCTG
GCGGAGGACGCGGAAGCCGAGAACAATGAAGCGCGGGTCGTAGACGGCTC
GGCGTTGACCCCTGATGATAACATCGAAGCGGCCCAGGGTTAAGGGCGTA
ACGGCGGTCAAGTTCCGAGACTACGCCCTTGGCTGCGTCGGCATGGTCCC
CGGCACGGCGGCGTTCGTCTTCATCGGCACCACGGCGTCGGGTCTCTTGG
GAGACGCCGACGAGGAGGAGGAAGAGGACTCCGGGGACGGGAGTAACTCC
GCGGTACAGCTCATCGTTCTCATCGTGGGGGGGATCGCTACCGTAATCGC
TGTCATCCTGATCAGCATCTACTCCAAGCGCGCCCTGAACAAGGTGCTGG
CGGAGGACGCGGAAGCCGAGAACAATGAAGCGCGGGTCGTAGACGGCTCG
GCGTTGACCCCTGATGATAACATCGAAGCGGCCCAGGGTTAA
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