mRNA_L-elsbetiae_contig10219.267.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10219.267.1
Unique NamemRNA_L-elsbetiae_contig10219.267.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10219.267.1 vs. uniprot
Match: A0A6H5JS12_9PHAE (EH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS12_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 2.430e-33
Identity = 60/78 (76.92%), Postives = 65/78 (83.33%), Query Frame = 1 
Query:    1 QPLQSSGVNVRNVRDILRIADWDDQGDLGLDEFFLAMYLCRRHRMEGGVPSMLEAWMIPPSLRETRGCQDNSPCPAYP 234
            +PLQ SGVNVR  R IL+IADW  +GDLGLDEF LAMYLCRR R+  GVPSMLEAWMIPPSLRE RGC+DN P PAYP
Sbjct:  343 EPLQGSGVNVRMARAILQIADWQHRGDLGLDEFSLAMYLCRRQRLGEGVPSMLEAWMIPPSLREARGCRDNGPSPAYP 420
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10219.267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JS12_9PHAE2.430e-3376.92EH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10219contigL-elsbetiae_contig10219:5571..6159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size334
Cds size135
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10219.267.1prot_L-elsbetiae_contig10219.267.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10219 5662..6051 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815252.7027848-UTR-L-elsbetiae_contig10219:5570..56611622815252.7027848-UTR-L-elsbetiae_contig10219:5570..5661Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10219 5571..5661 -
1691682797.4402237-UTR-L-elsbetiae_contig10219:5570..56611691682797.4402237-UTR-L-elsbetiae_contig10219:5570..5661Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10219 5571..5661 -
1622815252.7343054-UTR-L-elsbetiae_contig10219:6051..61591622815252.7343054-UTR-L-elsbetiae_contig10219:6051..6159Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10219 6052..6159 -
1691682797.4732916-UTR-L-elsbetiae_contig10219:6051..61591691682797.4732916-UTR-L-elsbetiae_contig10219:6051..6159Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10219 6052..6159 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815252.7144897-CDS-L-elsbetiae_contig10219:5661..57941622815252.7144897-CDS-L-elsbetiae_contig10219:5661..5794Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10219 5662..5794 -
1691682797.4532459-CDS-L-elsbetiae_contig10219:5661..57941691682797.4532459-CDS-L-elsbetiae_contig10219:5661..5794Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10219 5662..5794 -
1622815252.7249455-CDS-L-elsbetiae_contig10219:6049..60511622815252.7249455-CDS-L-elsbetiae_contig10219:6049..6051Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10219 6050..6051 -
1691682797.463995-CDS-L-elsbetiae_contig10219:6049..60511691682797.463995-CDS-L-elsbetiae_contig10219:6049..6051Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10219 6050..6051 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10219.267.1

>prot_L-elsbetiae_contig10219.267.1 ID=prot_L-elsbetiae_contig10219.267.1|Name=mRNA_L-elsbetiae_contig10219.267.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=45bp
MYLCRRHRMEGGVPSMLEAWMIPPSLRETRGCQDNSPCPAYPPW*
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mRNA from alignment at L-elsbetiae_contig10219:5571..6159-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10219.267.1 ID=mRNA_L-elsbetiae_contig10219.267.1|Name=mRNA_L-elsbetiae_contig10219.267.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=589bp|location=Sequence derived from alignment at L-elsbetiae_contig10219:5571..6159- (Laminarionema elsbetiae ELsaHSoW15)
CAGCCTCTTCAAAGTTCCGGGGTGAACGTGCGCAACGTGCGAGACATACT
GCGGATAGCCGACTGGGACGACCAAGGGGATCTGGGTCTCGACGAGTTTT
TCTTGGCGATGTGAGCGGCAAAAGCACACGGACAGACATGCATACTGCTG
TACCTCCTGAAATCGTGGCATTTTTTTTTCAGTGAGGCTGGGAAGGTCGG
TGAGATATTTACTCTTTTTATTTTATTTTATTTATTTTATTACTTTTTGA
AAATCTTGATGGGAAACCTCTGGCGTCAGGTGGAATCTCGCGGGTTTTTT
GGGGCAGAACCTGCAGCTATTCTTAACACCACCCTAACAGCCGTAACCCG
TTCTTACGCCCGTAGGTACCTCTGCAGACGGCACCGCATGGAAGGAGGGG
TCCCGTCGATGCTCGAGGCGTGGATGATACCGCCAAGCCTCCGCGAAACA
CGGGGGTGCCAAGACAACAGCCCCTGCCCTGCGTACCCCCCGTGGTGACG
AAAGCCCCCAAGACGAGAGAGAGGGAGAGAAAGAGGGGAGAGATGCAGAG
TGCTCGTGGCGCACGAGGGGGGAGATAGATATAGAGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10219:5571..6159-

>mRNA_L-elsbetiae_contig10219.267.1 ID=mRNA_L-elsbetiae_contig10219.267.1|Name=mRNA_L-elsbetiae_contig10219.267.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=270bp|location=Sequence derived from alignment at L-elsbetiae_contig10219:5571..6159- (Laminarionema elsbetiae ELsaHSoW15)
ATATGTACCTCTGCAGACGGCACCGCATGGAAGGAGGGGTCCCGTCGATG
CTCGAGGCGTGGATGATACCGCCAAGCCTCCGCGAAACACGGGGGTGCCA
AGACAACAGCCCCTGCCCTGCGTACCCCCCGTGGTGAGTACCTCTGCAGA
CGGCACCGCATGGAAGGAGGGGTCCCGTCGATGCTCGAGGCGTGGATGAT
ACCGCCAAGCCTCCGCGAAACACGGGGGTGCCAAGACAACAGCCCCTGCC
CTGCGTACCCCCCGTGGTGA
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