mRNA_L-elsbetiae_contig10218.265.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10218.265.1
Unique NamemRNA_L-elsbetiae_contig10218.265.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig10218.265.1 vs. uniprot
Match: A0A6H5KR82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR82_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.350e-17
Identity = 77/164 (46.95%), Postives = 91/164 (55.49%), Query Frame = 1 
Query:   19 CRRSCSGGALSALSGYPQPMS-PSSNSAQGRASPTSSFGGMVSSVGRAGFVGAGXXXXXRA-TGLPLSPASSVHSGFGXXXXXXXXGGISPVSS-LSNSPANSPFRRADSLTRRSQTPPPMTRRAATNSYGYAHGGG--AAASVSLGAGRLSPGSQTPPRRATA 495
            CRRS SGG LSAL G+  P++ P+ + A+G A           S+GR   +G G         GL LSPASS HS  G           SP SS L+NSPA+SPFRRAD+L+RRSQTPP    R               A A+VSLG GR SP SQ+PPRRATA
Sbjct:  910 CRRSSSGGTLSALLGHLDPLTLPNGDRARGLA---------AGSMGRPASLGHGSLGVSTGGDGLVLSPASSAHSNNGFAS--------SPASSSLNNSPASSPFRRADALSRRSQTPPLTGSRIGRGGXXXXXXXXXXAGAAVSLGVGRSSPDSQSPPRRATA 1056
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10218.265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KR82_9PHAE1.350e-1746.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10218contigL-elsbetiae_contig10218:3473..3975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size504
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815252.6205592-CDS-L-elsbetiae_contig10218:3472..39731622815252.6205592-CDS-L-elsbetiae_contig10218:3472..3973Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10218 3473..3973 +
1691682797.398727-CDS-L-elsbetiae_contig10218:3472..39731691682797.398727-CDS-L-elsbetiae_contig10218:3472..3973Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10218 3473..3973 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10218.265.1prot_L-elsbetiae_contig10218.265.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10218 3473..3973 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10218.265.1

>prot_L-elsbetiae_contig10218.265.1 ID=prot_L-elsbetiae_contig10218.265.1|Name=mRNA_L-elsbetiae_contig10218.265.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=167bp
DVRPGLCRRSCSGGALSALSGYPQPMSPSSNSAQGRASPTSSFGGMVSSV
GRAGFVGAGAGAGARATGLPLSPASSVHSGFGGGGGGGHGGGISPVSSLS
NSPANSPFRRADSLTRRSQTPPPMTRRAATNSYGYAHGGGAAASVSLGAG
RLSPGSQTPPRRATASF
back to top

mRNA from alignment at L-elsbetiae_contig10218:3473..3975+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10218.265.1 ID=mRNA_L-elsbetiae_contig10218.265.1|Name=mRNA_L-elsbetiae_contig10218.265.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=503bp|location=Sequence derived from alignment at L-elsbetiae_contig10218:3473..3975+ (Laminarionema elsbetiae ELsaHSoW15)
GATGTTCGCCCGGGGCTGTGCCGCCGCTCGTGCAGCGGCGGGGCGCTGTC
GGCGCTATCGGGATACCCCCAACCGATGAGCCCCTCGTCCAACAGTGCGC
AGGGCCGAGCTTCGCCCACGAGCAGCTTCGGCGGAATGGTGTCGTCGGTC
GGGCGTGCGGGCTTCGTCGGTGCCGGTGCCGGTGCCGGCGCCAGGGCCAC
GGGGCTGCCGTTGTCCCCGGCGTCTTCGGTGCACAGCGGCTTCGGCGGCG
GCGGCGGCGGGGGGCACGGCGGCGGCATCTCCCCCGTGTCCTCGCTCAGC
AACAGCCCGGCGAATAGCCCCTTCAGGCGGGCGGACTCCCTCACCAGGCG
CTCGCAGACCCCGCCGCCGATGACGCGGAGGGCGGCGACGAACAGCTACG
GCTACGCCCACGGCGGCGGCGCGGCGGCGTCAGTCAGCCTGGGGGCGGGG
CGGTTGTCGCCGGGCTCGCAGACCCCGCCGCGGCGGGCCACGGCGAGCTT
TGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig10218:3473..3975+

>mRNA_L-elsbetiae_contig10218.265.1 ID=mRNA_L-elsbetiae_contig10218.265.1|Name=mRNA_L-elsbetiae_contig10218.265.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1002bp|location=Sequence derived from alignment at L-elsbetiae_contig10218:3473..3975+ (Laminarionema elsbetiae ELsaHSoW15)
GATGTTCGCCCGGGGCTGTGCCGCCGCTCGTGCAGCGGCGGGGCGCTGTC
GGCGCTATCGGGATACCCCCAACCGATGAGCCCCTCGTCCAACAGTGCGC
AGGGCCGAGCTTCGCCCACGAGCAGCTTCGGCGGAATGGTGTCGTCGGTC
GGGCGTGCGGGCTTCGTCGGTGCCGGTGCCGGTGCCGGCGCCAGGGCCAC
GGGGCTGCCGTTGTCCCCGGCGTCTTCGGTGCACAGCGGCTTCGGCGGCG
GCGGCGGCGGGGGGCACGGCGGCGGCATCTCCCCCGTGTCCTCGCTCAGC
AACAGCCCGGCGAATAGCCCCTTCAGGCGGGCGGACTCCCTCACCAGGCG
CTCGCAGACCCCGCCGCCGATGACGCGGAGGGCGGCGACGAACAGCTACG
GCTACGCCCACGGCGGCGGCGCGGCGGCGTCAGTCAGCCTGGGGGCGGGG
CGGTTGTCGCCGGGCTCGCAGACCCCGCCGCGGCGGGCCACGGCGAGCTT
TGATGTTCGCCCGGGGCTGTGCCGCCGCTCGTGCAGCGGCGGGGCGCTGT
CGGCGCTATCGGGATACCCCCAACCGATGAGCCCCTCGTCCAACAGTGCG
CAGGGCCGAGCTTCGCCCACGAGCAGCTTCGGCGGAATGGTGTCGTCGGT
CGGGCGTGCGGGCTTCGTCGGTGCCGGTGCCGGTGCCGGCGCCAGGGCCA
CGGGGCTGCCGTTGTCCCCGGCGTCTTCGGTGCACAGCGGCTTCGGCGGC
GGCGGCGGCGGGGGGCACGGCGGCGGCATCTCCCCCGTGTCCTCGCTCAG
CAACAGCCCGGCGAATAGCCCCTTCAGGCGGGCGGACTCCCTCACCAGGC
GCTCGCAGACCCCGCCGCCGATGACGCGGAGGGCGGCGACGAACAGCTAC
GGCTACGCCCACGGCGGCGGCGCGGCGGCGTCAGTCAGCCTGGGGGCGGG
GCGGTTGTCGCCGGGCTCGCAGACCCCGCCGCGGCGGGCCACGGCGAGCT
TT
back to top