mRNA_L-elsbetiae_contig10218.263.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10218.263.1
Unique NamemRNA_L-elsbetiae_contig10218.263.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10218.263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10218contigL-elsbetiae_contig10218:2102..2968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size868
Cds size867
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815252.5563805-CDS-L-elsbetiae_contig10218:2101..29681622815252.5563805-CDS-L-elsbetiae_contig10218:2101..2968Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10218 2102..2968 +
1691682797.3765135-CDS-L-elsbetiae_contig10218:2101..29681691682797.3765135-CDS-L-elsbetiae_contig10218:2101..2968Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10218 2102..2968 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10218.263.1prot_L-elsbetiae_contig10218.263.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10218 2102..2968 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10218.263.1

>prot_L-elsbetiae_contig10218.263.1 ID=prot_L-elsbetiae_contig10218.263.1|Name=mRNA_L-elsbetiae_contig10218.263.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=289bp
QRHAGLSGQRPDGGSPPPHVLVDLGFDDAGPAPTGVGGGGRTAGNGAARA
VEVSAVAAAATLRGGGGSGGFERTSRSAERPQQGRPRSMQSSLAPPQQRI
GGVERAASLGHPNTSEWKSLASRASSPSVVAGRSDFATRTATPPLGQQHQ
LGTGPSLPPTQLPESASYGHTPPHNSAAGRAPPPPVSDAFMGFGGPQQGV
AHHNHHPPPPPPPPPPPPTPPMQQQHQQQRQPQWSNPPSTLARHVAPQTA
MQAGNTFRHVSIAPQKQQLGAGSGGPLATNPVTSSGMTW
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mRNA from alignment at L-elsbetiae_contig10218:2102..2968+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10218.263.1 ID=mRNA_L-elsbetiae_contig10218.263.1|Name=mRNA_L-elsbetiae_contig10218.263.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=867bp|location=Sequence derived from alignment at L-elsbetiae_contig10218:2102..2968+ (Laminarionema elsbetiae ELsaHSoW15)
CAACGCCACGCGGGGTTGAGCGGGCAAAGACCCGACGGAGGCTCTCCTCC
GCCGCACGTGCTTGTCGATCTGGGTTTCGACGACGCCGGTCCGGCGCCAA
CGGGCGTTGGAGGCGGGGGCCGAACCGCCGGCAATGGTGCGGCTAGAGCA
GTGGAAGTCTCAGCGGTAGCAGCGGCAGCGACGCTTCGCGGCGGCGGCGG
CAGCGGTGGGTTTGAACGAACGTCGCGGTCGGCGGAGCGCCCTCAGCAGG
GCCGACCGCGTTCGATGCAGTCGTCGCTAGCCCCCCCGCAGCAACGAATC
GGAGGTGTAGAGAGGGCAGCCAGTCTGGGGCACCCGAATACGAGCGAGTG
GAAGAGCCTGGCGTCCCGGGCGTCGTCGCCGTCAGTAGTAGCCGGCCGCT
CCGACTTTGCAACGAGAACGGCAACGCCCCCGTTAGGGCAGCAGCACCAG
CTTGGCACCGGTCCAAGCCTGCCGCCAACACAGCTTCCAGAGTCTGCGTC
GTACGGGCACACCCCGCCTCACAACTCTGCCGCAGGCCGAGCGCCCCCGC
CACCGGTGTCCGATGCCTTTATGGGTTTCGGAGGGCCGCAGCAGGGTGTA
GCACATCACAATCACCACCCACCACCCCCTCCGCCGCCGCCGCCGCCGCC
ACCAACACCCCCTATGCAGCAGCAGCATCAGCAGCAGCGGCAGCCGCAAT
GGAGCAACCCCCCTTCCACGCTTGCCCGGCACGTTGCCCCGCAAACTGCA
ATGCAGGCGGGCAACACCTTTAGACACGTTAGTATAGCGCCGCAGAAGCA
GCAGCTAGGAGCAGGGAGTGGAGGACCACTGGCCACCAACCCAGTGACGA
GCTCGGGGATGACGTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10218:2102..2968+

>mRNA_L-elsbetiae_contig10218.263.1 ID=mRNA_L-elsbetiae_contig10218.263.1|Name=mRNA_L-elsbetiae_contig10218.263.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1734bp|location=Sequence derived from alignment at L-elsbetiae_contig10218:2102..2968+ (Laminarionema elsbetiae ELsaHSoW15)
CAACGCCACGCGGGGTTGAGCGGGCAAAGACCCGACGGAGGCTCTCCTCC
GCCGCACGTGCTTGTCGATCTGGGTTTCGACGACGCCGGTCCGGCGCCAA
CGGGCGTTGGAGGCGGGGGCCGAACCGCCGGCAATGGTGCGGCTAGAGCA
GTGGAAGTCTCAGCGGTAGCAGCGGCAGCGACGCTTCGCGGCGGCGGCGG
CAGCGGTGGGTTTGAACGAACGTCGCGGTCGGCGGAGCGCCCTCAGCAGG
GCCGACCGCGTTCGATGCAGTCGTCGCTAGCCCCCCCGCAGCAACGAATC
GGAGGTGTAGAGAGGGCAGCCAGTCTGGGGCACCCGAATACGAGCGAGTG
GAAGAGCCTGGCGTCCCGGGCGTCGTCGCCGTCAGTAGTAGCCGGCCGCT
CCGACTTTGCAACGAGAACGGCAACGCCCCCGTTAGGGCAGCAGCACCAG
CTTGGCACCGGTCCAAGCCTGCCGCCAACACAGCTTCCAGAGTCTGCGTC
GTACGGGCACACCCCGCCTCACAACTCTGCCGCAGGCCGAGCGCCCCCGC
CACCGGTGTCCGATGCCTTTATGGGTTTCGGAGGGCCGCAGCAGGGTGTA
GCACATCACAATCACCACCCACCACCCCCTCCGCCGCCGCCGCCGCCGCC
ACCAACACCCCCTATGCAGCAGCAGCATCAGCAGCAGCGGCAGCCGCAAT
GGAGCAACCCCCCTTCCACGCTTGCCCGGCACGTTGCCCCGCAAACTGCA
ATGCAGGCGGGCAACACCTTTAGACACGTTAGTATAGCGCCGCAGAAGCA
GCAGCTAGGAGCAGGGAGTGGAGGACCACTGGCCACCAACCCAGTGACGA
GCTCGGGGATGACGTGGCAACGCCACGCGGGGTTGAGCGGGCAAAGACCC
GACGGAGGCTCTCCTCCGCCGCACGTGCTTGTCGATCTGGGTTTCGACGA
CGCCGGTCCGGCGCCAACGGGCGTTGGAGGCGGGGGCCGAACCGCCGGCA
ATGGTGCGGCTAGAGCAGTGGAAGTCTCAGCGGTAGCAGCGGCAGCGACG
CTTCGCGGCGGCGGCGGCAGCGGTGGGTTTGAACGAACGTCGCGGTCGGC
GGAGCGCCCTCAGCAGGGCCGACCGCGTTCGATGCAGTCGTCGCTAGCCC
CCCCGCAGCAACGAATCGGAGGTGTAGAGAGGGCAGCCAGTCTGGGGCAC
CCGAATACGAGCGAGTGGAAGAGCCTGGCGTCCCGGGCGTCGTCGCCGTC
AGTAGTAGCCGGCCGCTCCGACTTTGCAACGAGAACGGCAACGCCCCCGT
TAGGGCAGCAGCACCAGCTTGGCACCGGTCCAAGCCTGCCGCCAACACAG
CTTCCAGAGTCTGCGTCGTACGGGCACACCCCGCCTCACAACTCTGCCGC
AGGCCGAGCGCCCCCGCCACCGGTGTCCGATGCCTTTATGGGTTTCGGAG
GGCCGCAGCAGGGTGTAGCACATCACAATCACCACCCACCACCCCCTCCG
CCGCCGCCGCCGCCGCCACCAACACCCCCTATGCAGCAGCAGCATCAGCA
GCAGCGGCAGCCGCAATGGAGCAACCCCCCTTCCACGCTTGCCCGGCACG
TTGCCCCGCAAACTGCAATGCAGGCGGGCAACACCTTTAGACACGTTAGT
ATAGCGCCGCAGAAGCAGCAGCTAGGAGCAGGGAGTGGAGGACCACTGGC
CACCAACCCAGTGACGAGCTCGGGGATGACGTGG
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