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Homology
BLAST of mRNA_L-elsbetiae_contig10187.235.1 vs. uniprot
Match: D7G7D8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7D8_ECTSI) HSP 1 Score: 390 bits (1002), Expect = 2.380e-131 Identity = 185/248 (74.60%), Postives = 215/248 (86.69%), Query Frame = 1
Query: 10 NDHPQGRLVDQLRANMDYCAAWMLVRPNELVRVSAAFQQAFPAPSDGKDRCDFVAAVPIRVAYQDWKTYRGVSATGTPDGVPSSPQKIQLYPRTRKGERLLQEAENRVGMRWSPTPTLPWRMLERMATHDVHWEENVEMFVLCAGYEATPPGSGICIELSVTGMVRAEDGGDGQKAGARVAREVLGLPGANGQKWFVFHVSRPDESDDEAHSITVRTIVETSKMSAGPRRPEASGGAPQPTQPVATPP 753
NDHP GR++DQLRA++DYC++WMLVRP+ELVRVSAAFQ AFPAP+DGKDRCDFVAAVP+R+AY DW+ YRG+S TGTPDGVPS+PQ+IQLYPRTRKGERLLQ+ +NRVGMRWSPTP PW+ LERMATHD +WE N + ++LCAGYEA PPGSG+ IELSVT M++AED GDGQ+AGARVAREVLGLPGANGQKWFVFHVSRPDE+ +EA +IT+R IV+TSKM PR P G APQ QP PP
Sbjct: 55 NDHPNGRIMDQLRASIDYCSSWMLVRPHELVRVSAAFQAAFPAPNDGKDRCDFVAAVPVRLAYNDWQRYRGISTTGTPDGVPSNPQQIQLYPRTRKGERLLQDPQNRVGMRWSPTPYRPWKTLERMATHDQYWESNQDHYLLCAGYEAFPPGSGVYIELSVTDMMKAEDAGDGQRAGARVAREVLGLPGANGQKWFVFHVSRPDEAHEEAFNITIRAIVDTSKMPGVPR-PHEPGRAPQLAQPPVLPP 301
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Sterile alpha motif/pointed domain |
| Ec32 ortholog | Ec-04_003200.1 |
| Exons | 6 |
| Model size | 1226 |
| Cds size | 1224 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815249.2236392-CDS-L-elsbetiae_contig10187:191..401 | 1622815249.2236392-CDS-L-elsbetiae_contig10187:191..401 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10187 192..401 + |
| 1691682795.1678953-CDS-L-elsbetiae_contig10187:191..401 | 1691682795.1678953-CDS-L-elsbetiae_contig10187:191..401 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10187 192..401 + |
| 1622815249.2401915-CDS-L-elsbetiae_contig10187:604..796 | 1622815249.2401915-CDS-L-elsbetiae_contig10187:604..796 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10187 605..796 + |
| 1691682795.1779017-CDS-L-elsbetiae_contig10187:604..796 | 1691682795.1779017-CDS-L-elsbetiae_contig10187:604..796 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10187 605..796 + |
| 1622815249.2542222-CDS-L-elsbetiae_contig10187:1632..1788 | 1622815249.2542222-CDS-L-elsbetiae_contig10187:1632..1788 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10187 1633..1788 + |
| 1691682795.1864412-CDS-L-elsbetiae_contig10187:1632..1788 | 1691682795.1864412-CDS-L-elsbetiae_contig10187:1632..1788 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10187 1633..1788 + |
| 1622815249.2654119-CDS-L-elsbetiae_contig10187:2731..2851 | 1622815249.2654119-CDS-L-elsbetiae_contig10187:2731..2851 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10187 2732..2851 + |
| 1691682795.194795-CDS-L-elsbetiae_contig10187:2731..2851 | 1691682795.194795-CDS-L-elsbetiae_contig10187:2731..2851 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10187 2732..2851 + |
| 1622815249.2760837-CDS-L-elsbetiae_contig10187:3604..3831 | 1622815249.2760837-CDS-L-elsbetiae_contig10187:3604..3831 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10187 3605..3831 + |
| 1691682795.2032635-CDS-L-elsbetiae_contig10187:3604..3831 | 1691682795.2032635-CDS-L-elsbetiae_contig10187:3604..3831 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10187 3605..3831 + |
| 1622815249.286841-CDS-L-elsbetiae_contig10187:3948..4267 | 1622815249.286841-CDS-L-elsbetiae_contig10187:3948..4267 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10187 3949..4267 + |
| 1691682795.213862-CDS-L-elsbetiae_contig10187:3948..4267 | 1691682795.213862-CDS-L-elsbetiae_contig10187:3948..4267 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10187 3949..4267 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10187.235.1 >prot_L-elsbetiae_contig10187.235.1 ID=prot_L-elsbetiae_contig10187.235.1|Name=mRNA_L-elsbetiae_contig10187.235.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=408bp
VCLNDHPQGRLVDQLRANMDYCAAWMLVRPNELVRVSAAFQQAFPAPSDG
KDRCDFVAAVPIRVAYQDWKTYRGVSATGTPDGVPSSPQKIQLYPRTRKG
ERLLQEAENRVGMRWSPTPTLPWRMLERMATHDVHWEENVEMFVLCAGYE
ATPPGSGICIELSVTGMVRAEDGGDGQKAGARVAREVLGLPGANGQKWFV
FHVSRPDESDDEAHSITVRTIVETSKMSAGPRRPEASGGAPQPTQPVATP
PNRSGTPPAATPADPALQQHNLQQRQQQQKRNQQQQQQLKKQQRRQLQQQ
QLSSSSAYAFSNSTAPDQPGIVSFGSFTADESAAAATTGPPPPQPSPPPP
PPPQPQQPENPGVDELTELLASLNMTKYRPKFDDQNVDFKALKTMTVEDQ
LSGIGIPL back to topmRNA from alignment at L-elsbetiae_contig10187:192..4268+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig10187.235.1 ID=mRNA_L-elsbetiae_contig10187.235.1|Name=mRNA_L-elsbetiae_contig10187.235.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4077bp|location=Sequence derived from alignment at L-elsbetiae_contig10187:192..4268+ (Laminarionema elsbetiae ELsaHSoW15)
GTATGTCTCAACGACCACCCTCAGGGCCGCTTGGTGGACCAGCTACGCGC
CAACATGGACTACTGCGCGGCCTGGATGCTGGTGCGGCCGAACGAGCTCG
TGCGGGTGTCGGCGGCGTTTCAGCAGGCTTTCCCCGCGCCGAGCGACGGG
AAGGACCGCTGCGATTTCGTCGCCGCTGTTCCCATACGCGTTGCGTACCA
GGACTGGAAGGTGCGGCCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGGGCGGGGTGTTTTGTAGAGTGTCAGGAATATGAGAAAATAAG
AGCTGGTAAGAGTATCTACGAAGGTTAACGTTTGCAGCACTGCTTGACAA
ACCCGCCAGCCCCCGCGACCCCCCCCCCCCCCCCCCCCTTCATTCCGTTT
GCGTCTGAAATAGACATATCGTGGGGTATCTGCCACAGGAACCCCCGACG
GGGTCCCCAGCTCGCCGCAGAAGATCCAGCTGTATCCGCGAACCCGGAAG
GGGGAGCGCCTCCTGCAGGAGGCGGAGAACCGCGTCGGGATGCGCTGGTC
GCCGACCCCGACCCTGCCGTGGAGGATGCTCGAGCGAATGGCCACTCACG
ACGTGGTGAGGCGAGGAGAGCCTGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGAAAAAGACGCCCCCCCGCCCGCGGCGGGTT
GGGGAGAGCGGGGGGGTGGGGGGGGAGCGAAACCGGGGGGTGGCTCNNNN
NNNNNNCCCTGCGGGGGGGGGTGCCGGGGGGAAGGGCCCCCCGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCAGGAGGTCGGATGGGA
GGGAGGGGCGAAGAAAGCAGCCGCCCGCCCACGACGTTTTCGGGGAACAC
GAGAGCTTTGTAGGGAGCTAAACAGCTGGTCGTGCTCTCGGCGCCACACA
GTCTGATTCGCCCTCGAAAAGGGGGGGTAATCTACGACCTGTGTTGAAAA
GCAACCAACCAAGCAAGCGGAGACCCACTGGCGGGACAAACCCACGAGAC
GGCGTTCTCCGCCGCCCTCTCGCCTGGCGGCGTTTTGCGGCGGTAATTTA
CTATTGTAGGACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCGCGCCCCCCCCCCCCCCCCCCCCCGCCCCCCCGCCCCCCGCCN
NNNNNNNNNCCCGGCGGGGCGTTCCCCCCCCCCCCCCCCCCGGGCGGCGT
TTTGGGGGGGTAATTTACTTTTGTAGGGCCCCCCCCCCCCCCCCGCGCCC
TCGGACTGGCGCTTCGTGTGTGACCCCTCCCGTGGCGCACCGGCCGACCG
CGCGCCATTCTGGTTCGTTTCGCTTGGTTTATTGCCGTTTCTGGCTTTGC
TTTTTGTCGACTTTTGGACGCCCGCACGCACGGACATGCAGCACTGGGAA
GAGAACGTGGAGATGTTCGTGCTCTGCGCCGGCTACGAGGCGACCCCGCC
GGGCAGCGGCATCTGCATCGAGCTCTCGGTGACCGGCATGGTCAGGGCGG
AGGACGGAGGGGACGGGCAGAAGGCGGGTGCACGCGTCGCTCGGGAGGTG
GGTGAGGCTGGCCGCTCAGTGGCTTGACGGGGCAGAGACAGACATACCGT
AGGTGACGCAAGAGAACACACCCCCTGGACACACTTTCAAAACTCGATTC
CTCCCCAGCAAGAAAAGTCTCAGTGCCGAAAGGGGTGGCGTTGGAAAGAT
CTCTTCGAGGGCTGTACGAAAACGTGTCGTACGGTGCTGGCATCTTCGTT
ACGGAGTAATGGAGCTCTGAAATTTGGCCCAGGGGGTGTGGTATCTTGTG
TCACCTACGGTAAACAGGCAGGCAGGCAAATTTGAAGATAAGAGAGAGGG
CGGGGGAGAGAGAGTCCGGTGGGCTGGGGGAGAGCAAGCGAGGGAGGGGG
AGGGGAGGGGGGATGGGCGGGTGGGGCTGGCACACGTGATGTGCGCAAGA
GGGTTAATTAAGAGACGCCATGGCGAAATTTCGAGCAACAGTAGCAGTAG
TGTTAAAATCTCCGACATGGCCGGGACAGCAGACGGTGGGAACCGGTAGC
AAGCGCGGGGGGGCGCGTGCGGTGCCGAGAGGCGACAAAAAATTTTGACG
TCAATCTCTTCCAGATGCTCATGCTTGGTACCAGAGTTTTGGAGCCCGTG
TCGCGGCTTTTTGTTGTTTCGCTTCGTGTCATGCAGTGATTCAGCGGGAG
AGAGGATTTGTTGGTTCTCAAAGGCTTTGAGGTAAAAGCAGTGTGCTCGT
GACCTTGGTGCGGGGCGTTGATGAGCGAGGTGCAAGGTTTGTGATCATCT
ACAATATGGTTTCGATATATGCCACCTCCGCGTCAGGCTTCGCGGGGGGT
TCCGCTGCTGTACTCTAAATAAAGCACAGCAGCAGCAGCAACAACAGCGG
TACCGTAGTCATCGGCACGCGATGGATAGCTGTGCCGCAATCAGGTCCAC
CAGGGAGTATTCGTTTTCCGTGCGCTTGTGGTTCGTTCAGGTGCTGGGAC
TGCCCGGCGCCAACGGCCAGAAGTGGTTCGTGTTCCACGTGTCAAGGCCC
GACGAGTCGGACGACGAGGCGCACTCCATCACCGTCAGGACGATCGTAGA
AACCAGCAAGGTTTGGCCGCCTGATTGATGCCTCAGCCCTCGAGAGCGGG
TGCTTGTTGAGATAGGGGTCTCTGACCTCCGTTCCCACTCGTGTCGTGCG
TGGGGGAGAGAAGGGCGAGGAGTTTGTGCTGTACGAGAAAATTGATGATT
GTATGGTCCGTGCACATACATGTGAAAAAGGTCTTGGTCAGACGGTTGGT
AGGAAGTTCATATTTACCCCTCATAAGGGCGATCTCCACATTTGGGCAGG
CGATAGGAAGTTCATTCCTCTCATCAAGGCGACCTCCACATTAAGAAGGT
ATTTCGACTTTGTTTTTCTCGGAGAATATATTATGTATATCGTAGTGGAG
TTCGAACTCGGGACTTTGTCCACCAAAAACCAGCGGCTTCTTCGCGACGG
ACGCCGGATGTGAAAAAGGTCAAACGTCTTGGACAGACGATACGTAGTAG
GAGGTGCGTGCATACCCTTTATTAGGGTAACCTCCACGTATGAGCCACAT
GTGGAGTCCAAACGCTTTGTGTTGCTGTGCATTTGGGCCAGGAATACTCG
CCTTTGCTCTCTCTGCCCCCCTCCGCTGTAAGTCCGTTCTCTTTCCGCGA
GCGTTTCTTGAGAAGGAGCGCTGGCTCACCCCTCGAGATGCGACTCGTCC
AGCACCATGCCTGATTTCGTTCTGGCGACTCATGATGATGGTTTTGCGTG
GCACACAAAACCACGACGCTTGCTTGATAAGTTCTTTGTGTTCTGCTGTG
CGCCCCGTTGCAGATGTCCGCCGGGCCCCGCCGCCCCGAAGCTAGCGGAG
GAGCGCCCCAGCCGACGCAACCCGTGGCGACACCACCAAACAGGTCCGGG
ACTCCTCCCGCTGCCACTCCGGCGGATCCCGCTCTCCAGCAGCACAACCT
TCAGCAAAGGCAGCAGCAGCAGAAGCGAAACCAGCAGCAGCAGCAGCAGC
TCAAGAAGCAGCAGCGACGACAGCTGCAGCAGCAACAGCTGTTGCAGCAG
CAGCAGCGGCAACAACAACAGCGTGAGCACCTGCAGCAGCAGAAGCAGCA
GCAGCAGCAGCAGCAGCAGCTGGGGCAGCCATCCACCGCACCGGCATCGT
CGGCCAGTTCTTCATCGTCGGCGTACGCGTTCTCCAATTCCACCGCCCCC
GACCAGCCCGGCATCGTCAGCTTCGGCTCTTTCACAGCGGACGAATCCGC
CGCCGCTGCTACGACCGGACCACCCCCGCCGCAACCGTCGCCGCCGCCAC
CACCGCCGCCGCAGCCGCAGCAACCGGAGAACCCGGGCGTCGACGAATTG
ACCGAGCTGTTGGCGAGCCTGAACATGACCAAGTACCGGCCGAAGTTCGA
CGACCAGAACGTGGATTTCAAAGCCCTCAAGACGATGACGGTAGAAGACC
AGCTTTCGGGCATCGGCATCCCGCTGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig10187:192..4268+ >mRNA_L-elsbetiae_contig10187.235.1 ID=mRNA_L-elsbetiae_contig10187.235.1|Name=mRNA_L-elsbetiae_contig10187.235.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2448bp|location=Sequence derived from alignment at L-elsbetiae_contig10187:192..4268+ (Laminarionema elsbetiae ELsaHSoW15)
GTATGTCTCAACGACCACCCTCAGGGCCGCTTGGTGGACCAGCTACGCGC
CAACATGGACTACTGCGCGGCCTGGATGCTGGTGCGGCCGAACGAGCTCG
TGCGGGTGTCGGCGGCGTTTCAGCAGGCTTTCCCCGCGCCGAGCGACGGG
AAGGACCGCTGCGATTTCGTCGCCGCTGTTCCCATACGCGTTGCGTACCA
GGACTGGAAGGTATGTCTCAACGACCACCCTCAGGGCCGCTTGGTGGACC
AGCTACGCGCCAACATGGACTACTGCGCGGCCTGGATGCTGGTGCGGCCG
AACGAGCTCGTGCGGGTGTCGGCGGCGTTTCAGCAGGCTTTCCCCGCGCC
GAGCGACGGGAAGGACCGCTGCGATTTCGTCGCCGCTGTTCCCATACGCG
TTGCGTACCAGGACTGGAAGACATATCGTGGGGTATCTGCCACAGGAACC
CCCGACGGGGTCCCCAGCTCGCCGCAGAAGATCCAGCTGTATCCGCGAAC
CCGGAAGGGGGAGCGCCTCCTGCAGGAGGCGGAGAACCGCGTCGGGATGC
GCTGGTCGCCGACCCCGACCCTGCCGTGGAGGATGCTCGAGCGAATGGCC
ACTCACGACGTGACATATCGTGGGGTATCTGCCACAGGAACCCCCGACGG
GGTCCCCAGCTCGCCGCAGAAGATCCAGCTGTATCCGCGAACCCGGAAGG
GGGAGCGCCTCCTGCAGGAGGCGGAGAACCGCGTCGGGATGCGCTGGTCG
CCGACCCCGACCCTGCCGTGGAGGATGCTCGAGCGAATGGCCACTCACGA
CGTGCACTGGGAAGAGAACGTGGAGATGTTCGTGCTCTGCGCCGGCTACG
AGGCGACCCCGCCGGGCAGCGGCATCTGCATCGAGCTCTCGGTGACCGGC
ATGGTCAGGGCGGAGGACGGAGGGGACGGGCAGAAGGCGGGTGCACGCGT
CGCTCGGGAGCACTGGGAAGAGAACGTGGAGATGTTCGTGCTCTGCGCCG
GCTACGAGGCGACCCCGCCGGGCAGCGGCATCTGCATCGAGCTCTCGGTG
ACCGGCATGGTCAGGGCGGAGGACGGAGGGGACGGGCAGAAGGCGGGTGC
ACGCGTCGCTCGGGAGGTGCTGGGACTGCCCGGCGCCAACGGCCAGAAGT
GGTTCGTGTTCCACGTGTCAAGGCCCGACGAGTCGGACGACGAGGCGCAC
TCCATCACCGTCAGGACGATCGTAGAAACCAGCAAGGTGCTGGGACTGCC
CGGCGCCAACGGCCAGAAGTGGTTCGTGTTCCACGTGTCAAGGCCCGACG
AGTCGGACGACGAGGCGCACTCCATCACCGTCAGGACGATCGTAGAAACC
AGCAAGATGTCCGCCGGGCCCCGCCGCCCCGAAGCTAGCGGAGGAGCGCC
CCAGCCGACGCAACCCGTGGCGACACCACCAAACAGGTCCGGGACTCCTC
CCGCTGCCACTCCGGCGGATCCCGCTCTCCAGCAGCACAACCTTCAGCAA
AGGCAGCAGCAGCAGAAGCGAAACCAGCAGCAGCAGCAGCAGCTCAAGAA
GCAGCAGCGACGACAGCTGCAGCAGCAACAGCTATGTCCGCCGGGCCCCG
CCGCCCCGAAGCTAGCGGAGGAGCGCCCCAGCCGACGCAACCCGTGGCGA
CACCACCAAACAGGTCCGGGACTCCTCCCGCTGCCACTCCGGCGGATCCC
GCTCTCCAGCAGCACAACCTTCAGCAAAGGCAGCAGCAGCAGAAGCGAAA
CCAGCAGCAGCAGCAGCAGCTCAAGAAGCAGCAGCGACGACAGCTGCAGC
AGCAACAGCTTTCTTCATCGTCGGCGTACGCGTTCTCCAATTCCACCGCC
CCCGACCAGCCCGGCATCGTCAGCTTCGGCTCTTTCACAGCGGACGAATC
CGCCGCCGCTGCTACGACCGGACCACCCCCGCCGCAACCGTCGCCGCCGC
CACCACCGCCGCCGCAGCCGCAGCAACCGGAGAACCCGGGCGTCGACGAA
TTGACCGAGCTGTTGGCGAGCCTGAACATGACCAAGTACCGGCCGAAGTT
CGACGACCAGAACGTGGATTTCAAAGCCCTCAAGACGATGACGGTAGAAG
ACCAGCTTTCGGGCATCGGCATCCCGCTGTTCTTCATCGTCGGCGTACGC
GTTCTCCAATTCCACCGCCCCCGACCAGCCCGGCATCGTCAGCTTCGGCT
CTTTCACAGCGGACGAATCCGCCGCCGCTGCTACGACCGGACCACCCCCG
CCGCAACCGTCGCCGCCGCCACCACCGCCGCCGCAGCCGCAGCAACCGGA
GAACCCGGGCGTCGACGAATTGACCGAGCTGTTGGCGAGCCTGAACATGA
CCAAGTACCGGCCGAAGTTCGACGACCAGAACGTGGATTTCAAAGCCCTC
AAGACGATGACGGTAGAAGACCAGCTTTCGGGCATCGGCATCCCGCTG back to top
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