mRNA_L-elsbetiae_contig10183.232.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10183.232.1
Unique NamemRNA_L-elsbetiae_contig10183.232.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10183.232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10183contigL-elsbetiae_contig10183:1..175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815248.958877-CDS-L-elsbetiae_contig10183:0..801622815248.958877-CDS-L-elsbetiae_contig10183:0..80Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10183 1..80 -
1691682795.0198781-CDS-L-elsbetiae_contig10183:0..801691682795.0198781-CDS-L-elsbetiae_contig10183:0..80Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10183 1..80 -
1622815248.9717004-CDS-L-elsbetiae_contig10183:90..1751622815248.9717004-CDS-L-elsbetiae_contig10183:90..175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10183 91..175 -
1691682795.0313003-CDS-L-elsbetiae_contig10183:90..1751691682795.0313003-CDS-L-elsbetiae_contig10183:90..175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10183 91..175 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10183.232.1prot_L-elsbetiae_contig10183.232.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10183 1..175 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10183.232.1

>prot_L-elsbetiae_contig10183.232.1 ID=prot_L-elsbetiae_contig10183.232.1|Name=mRNA_L-elsbetiae_contig10183.232.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=55bp
RAPRRWHRFPPLRTLWTCSRVFVNKGSRNETNEQPTRPPLSRDSSASRAG
VEVF*
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mRNA from alignment at L-elsbetiae_contig10183:1..175-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10183.232.1 ID=mRNA_L-elsbetiae_contig10183.232.1|Name=mRNA_L-elsbetiae_contig10183.232.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=175bp|location=Sequence derived from alignment at L-elsbetiae_contig10183:1..175- (Laminarionema elsbetiae ELsaHSoW15)
CGGGCCCCCCGAAGGTGGCATCGTTTCCCCCCACTCCGTACTCTGTGGAC
GTGTAGTCGTGTGTTCGTTAACAAGGGCTCGAGAAGCAGAAAGAGACGAG
ACGAACGAGCAGCCGACACGGCCGCCGCTGTCCAGAGATAGCAGCGCCTC
CAGAGCTGGTGTTGAAGTTTTCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10183:1..175-

>mRNA_L-elsbetiae_contig10183.232.1 ID=mRNA_L-elsbetiae_contig10183.232.1|Name=mRNA_L-elsbetiae_contig10183.232.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=330bp|location=Sequence derived from alignment at L-elsbetiae_contig10183:1..175- (Laminarionema elsbetiae ELsaHSoW15)
CGGGCCCCCCGAAGGTGGCATCGTTTCCCCCCACTCCGTACTCTGTGGAC
GTGTAGTCGTGTGTTCGTTAACAAGGGCTCGAGAACGGGCCCCCCGAAGG
TGGCATCGTTTCCCCCCACTCCGTACTCTGTGGACGTGTAGTCGTGTGTT
CGTTAACAAGGGCTCGAGAAACGAGACGAACGAGCAGCCGACACGGCCGC
CGCTGTCCAGAGATAGCAGCGCCTCCAGAGCTGGTGTTGAAGTTTTCTGA
ACGAGACGAACGAGCAGCCGACACGGCCGCCGCTGTCCAGAGATAGCAGC
GCCTCCAGAGCTGGTGTTGAAGTTTTCTGA
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