mRNA_L-elsbetiae_contig10180.230.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10180.230.1
Unique NamemRNA_L-elsbetiae_contig10180.230.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10180.230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10180contigL-elsbetiae_contig10180:301..2134 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size356
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815248.85201-CDS-L-elsbetiae_contig10180:301..4031622815248.85201-CDS-L-elsbetiae_contig10180:301..403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10180 302..403 -
1691682794.9745233-CDS-L-elsbetiae_contig10180:301..4031691682794.9745233-CDS-L-elsbetiae_contig10180:301..403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10180 302..403 -
1622815248.8623023-CDS-L-elsbetiae_contig10180:1882..21341622815248.8623023-CDS-L-elsbetiae_contig10180:1882..2134Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10180 1883..2134 -
1691682794.9833233-CDS-L-elsbetiae_contig10180:1882..21341691682794.9833233-CDS-L-elsbetiae_contig10180:1882..2134Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10180 1883..2134 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10180.230.1prot_L-elsbetiae_contig10180.230.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10180 302..2134 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10180.230.1

>prot_L-elsbetiae_contig10180.230.1 ID=prot_L-elsbetiae_contig10180.230.1|Name=mRNA_L-elsbetiae_contig10180.230.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
PYFATRGVTDDDTVSTPATRRWGLKNPGITFTDRSDGRSGGGDGTPGSYS
PRILTVLTTYANRSSLIKPYKEASSNRSDNYQPTIFAVSNAGDDASDEVV
DFKTGSAGQHRALAAIAE
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mRNA from alignment at L-elsbetiae_contig10180:301..2134-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10180.230.1 ID=mRNA_L-elsbetiae_contig10180.230.1|Name=mRNA_L-elsbetiae_contig10180.230.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1834bp|location=Sequence derived from alignment at L-elsbetiae_contig10180:301..2134- (Laminarionema elsbetiae ELsaHSoW15)
CCCTACTTCGCAACAAGAGGTGTTACCGACGATGACACCGTGTCGACGCC
GGCAACAAGACGGTGGGGCCTCAAAAACCCTGGCATCACTTTCACCGACC
GGAGCGACGGCAGATCAGGTGGTGGCGATGGAACACCTGGTTCGTACAGC
CCAAGGATATTGACGGTGTTGACTACCTATGCCAATCGATCCAGTTTGAT
CAAGCCGTACAAAGAGGCTTCTTCCAATCGAAGCGACAACTACCAACCCA
CGGTGCGCGCCGGACAGCGTAGGATTGACTGTGTCAACTTGACGATGTTG
TGATTTACATGCTAGGGGCGCTGAGTTATTAGTTTCCCTTTGCCACCCGA
CAAGTGCTGACTTCCAAAAATTCCTACTCTTATATAAAAGGCCCCGCTGG
CGAGAGGTCGATGAATCCAGTTTTTCGCCGATATCTCACCAACCATCGTT
TTTATCAATAATCGGAAAAAGTACCAGTCTGGGGACTTTCGAGAGGAATC
GTTTGCCGTGTTTTTTTTTAAACGTATGATTGATTATCGCAGGAAAACGC
GAACAAAATATTCCGGTAATTTGGGGATTTCATCGAAACGAAAAGAAAAA
AAAACTCTTCCCATACCGAGACGCGCCTGAAGACAGGGCGTTTGCCGGTG
TCTGTGAAATTCGGAAAAACCACCCGTCCGTGTCCAGAGAAATGTGTGCA
GGTCGAAATTGTGGATAAACTGATCCAGACGGACCATACCTAGACATGAA
TCATAGACTAGTCTATCTATGGTGTGTACCTTTCTACACCAACCCTGCGT
ATAGTGGTGTGTGTTCAACATAAACACACACACACCCACAGCGGCAGTAG
TCTATTAGTCTTGTTGCGGTATCGTGGGTTTTCGGTTCTGTGTATCTATG
TATGTATGTTATGTAGATACGGCAATGCTTTCGCGGGGGGCTTACCCCGA
TACCCATGTTTACCCGTTTGCATGGCACTTTGGATTCCCTGTCACATACA
TACAATGAATGAGTTACGAAGTACACCAACAATGACGGCCGAGATTGTCC
TGCCTCCTGCCTTGCCCGGTTCAATCTTTCTGTCCGAAAGCTTTTTTCTC
TTTCGGTAAATCCATGTATGTACTTCGTTCAAAATATATACTGGTATACT
TCATCGCCAATCCATCACGCCCGCCCTCGACTCTGCTGATTTCGCGAACA
GCAAGGGCATGTTCGCACGTCTGCCTCACCCACATTCCTTTTCACGGCCT
GCGCTACCGTGCAACTTCCTTCCTTCTCCCCCATCCTGCCTTCACGTCGA
GAGTCTTCTGGCCCCACCGTCCACTGGGGGCGGGGGGGTGCGTTCTATAA
CCCTAGTAAGACTATATGTACATAGATACATGTAGTCTACTCGTACACCA
GCACAGACAGGTGTTTTCTTACGGATACCCACAAAATCGTCGGCGAGAAA
GCCGACTTTTCTCCGATGTACACACCGACGAGCCATGCATGTGATCATCC
ACCCAAGGACTCTGTGATGTGGTTTGAGCGTCAATAGCAACTATCATCCT
CACGGAAATGTGAGCTTCGCGCCTTTCCTGTGCATGTTCCCCAGGCTGTG
GCGAAAGTAAGCCATGGTGCAGTTGTGTTTCTGATGGCCCCACGTCCCTC
GCGGGAGGCTATCTATTGGTGGGAGACGGCCTCTGTGCATGGTAGTTTCA
GAATGAAATCGCAACTACAACCATTGCACAGATTTTCGCCGTTTCCAACG
CGGGCGACGACGCCTCCGATGAAGTTGTGGACTTTAAGACCGGGTCCGCG
GGGCAGCACCGTGCGTTAGCTGCTATTGCTGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10180:301..2134-

>mRNA_L-elsbetiae_contig10180.230.1 ID=mRNA_L-elsbetiae_contig10180.230.1|Name=mRNA_L-elsbetiae_contig10180.230.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig10180:301..2134- (Laminarionema elsbetiae ELsaHSoW15)
CCCTACTTCGCAACAAGAGGTGTTACCGACGATGACACCGTGTCGACGCC
GGCAACAAGACGGTGGGGCCTCAAAAACCCTGGCATCACTTTCACCGACC
GGAGCGACGGCAGATCAGGTGGTGGCGATGGAACACCTGGTTCGTACAGC
CCAAGGATATTGACGGTGTTGACTACCTATGCCAATCGATCCAGTTTGAT
CAAGCCGTACAAAGAGGCTTCTTCCAATCGAAGCGACAACTACCAACCCA
CGCCCTACTTCGCAACAAGAGGTGTTACCGACGATGACACCGTGTCGACG
CCGGCAACAAGACGGTGGGGCCTCAAAAACCCTGGCATCACTTTCACCGA
CCGGAGCGACGGCAGATCAGGTGGTGGCGATGGAACACCTGGTTCGTACA
GCCCAAGGATATTGACGGTGTTGACTACCTATGCCAATCGATCCAGTTTG
ATCAAGCCGTACAAAGAGGCTTCTTCCAATCGAAGCGACAACTACCAACC
CACGATTTTCGCCGTTTCCAACGCGGGCGACGACGCCTCCGATGAAGTTG
TGGACTTTAAGACCGGGTCCGCGGGGCAGCACCGTGCGTTAGCTGCTATT
GCTGAGATTTTCGCCGTTTCCAACGCGGGCGACGACGCCTCCGATGAAGT
TGTGGACTTTAAGACCGGGTCCGCGGGGCAGCACCGTGCGTTAGCTGCTA
TTGCTGAG
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