mRNA_L-elsbetiae_contig10177.226.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10177.226.1
Unique NamemRNA_L-elsbetiae_contig10177.226.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10177.226.1 vs. uniprot
Match: A0A6H5KIA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA2_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.610e-18
Identity = 69/142 (48.59%), Postives = 83/142 (58.45%), Query Frame = -3 
Query:    2 PVDSSGVDLLSPSVVPLTSMWDLSSSPAAPDSKRFHGGTT---DASAPT-VRGGEAREGTSGQSS--------GSGRKLEECNMGQRAPEKEAAEKGVSETETNKRGGGHCTTLVRHLGAVLGLRGKEAYRRPRPGQPVWRK 391
            PVDS+GV LL+P +VPLTS+  LS++ A   +    G  +   DAS  T +   E +E  S  SS        G GR  E   MG+R       E G  E    +RGGG CTTLV+HLG VLGLRGKEAYRRP PG+PVWRK
Sbjct:   19 PVDSTGVKLLTPRIVPLTSIRALSAAGATAAAAAAEGPNSTDNDASFTTSISRAERKEEFSRHSSVHPSGGALGHGRAAEV--MGERK-----FEAGSQEDHKKRRGGGPCTTLVQHLGTVLGLRGKEAYRRPGPGKPVWRK 153
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BLAST of mRNA_L-elsbetiae_contig10177.226.1 vs. uniprot
Match: D7FGV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV1_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 3.290e-18
Identity = 67/144 (46.53%), Postives = 83/144 (57.64%), Query Frame = -3 
Query:    2 PVDSSGVDLLSPSVVPLTSMWDLSSSPA----------APDSKRFHGG-TTDASAPTVRGGEAREGT---SGQSSGSGRKLEECNMGQRAPEKEAAEKGVSETETNKRGGGHCTTLVRHLGAVLGLRGKEAYRRPRPGQPVWRK 391
            PVDS+GV+LL+P +VPLTS+  LS++ A           P+S       TT  S   +R   +R  +   SG + G GR  E    G+R  E  +      E    + GGGHCTTLVRHLG VLGLRGKEAYRRP PG+PVWRK
Sbjct:   33 PVDSTGVELLTPRIVPLTSIRALSAAGAXXXXXXXXTEGPNSTNNDASFTTQISRAEIREEFSRHSSVHLSGGALGDGRVAEA--RGERKLEARS-----QEDHKKRGGGGHCTTLVRHLGTVLGLRGKEAYRRPGPGKPVWRK 169
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10177.226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KIA2_9PHAE1.610e-1848.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FGV1_ECTSI3.290e-1846.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10177contigL-elsbetiae_contig10177:5003..5431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size431
Cds size420
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815248.4140801-CDS-L-elsbetiae_contig10177:5002..54221622815248.4140801-CDS-L-elsbetiae_contig10177:5002..5422Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10177 5003..5422 +
1691682794.7778008-CDS-L-elsbetiae_contig10177:5002..54221691682794.7778008-CDS-L-elsbetiae_contig10177:5002..5422Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10177 5003..5422 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815248.4246674-UTR-L-elsbetiae_contig10177:5422..54311622815248.4246674-UTR-L-elsbetiae_contig10177:5422..5431Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10177 5423..5431 +
1691682794.7867694-UTR-L-elsbetiae_contig10177:5422..54311691682794.7867694-UTR-L-elsbetiae_contig10177:5422..5431Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10177 5423..5431 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10177.226.1prot_L-elsbetiae_contig10177.226.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10177 5003..5422 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10177.226.1

>prot_L-elsbetiae_contig10177.226.1 ID=prot_L-elsbetiae_contig10177.226.1|Name=mRNA_L-elsbetiae_contig10177.226.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=140bp
FFAKPAGRASAVDTPPYPADPTLPPGASPASCSARRPACSSPSRSPLFRR
PLFLAPVVPCCILPASYQNLSSGQRYPLLLLLLERLAHSHPSCRRETSWS
LVPRERMRGPTSTSEERRSGTRGPLRCYPREALLIHHRR*
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mRNA from alignment at L-elsbetiae_contig10177:5003..5431+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10177.226.1 ID=mRNA_L-elsbetiae_contig10177.226.1|Name=mRNA_L-elsbetiae_contig10177.226.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=429bp|location=Sequence derived from alignment at L-elsbetiae_contig10177:5003..5431+ (Laminarionema elsbetiae ELsaHSoW15)
TTTTTCGCCAAACCGGCTGGCCGGGCCTCGGCCGTCGATACGCCTCCTTA
CCCCGCAGACCCAACACTGCCCCCAGGTGCCTCACCAGCGTCGTGCAGTG
CCCGCCGCCCCGCTTGTTCGTCTCCGTCTCGCTCACCCCTTTTTCGGCGG
CCTCTTTTTCTGGCGCCCGTTGTCCCATGTTGCATTCTTCCAGCTTCCTA
CCAGAACCTGAGCTCTGGCCAGAGGTACCCTCTCTTGCTTCTCCTCCTCG
AACGGTTGGCGCACTCGCATCCGTCGTGCCGCCGTGAAACCTCTTGGAGT
CTGGTGCCGCGGGAGAGGATGAGAGGTCCCACATCGACGTCAGAGGAACG
ACGCTCGGGGACAAGAGGTCCACTCCGCTGCTATCCACGGGAGGCTCTGC
TGATTCACCACAGGCGGTGACGATCGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10177:5003..5431+

>mRNA_L-elsbetiae_contig10177.226.1 ID=mRNA_L-elsbetiae_contig10177.226.1|Name=mRNA_L-elsbetiae_contig10177.226.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig10177:5003..5431+ (Laminarionema elsbetiae ELsaHSoW15)
TTTTTCGCCAAACCGGCTGGCCGGGCCTCGGCCGTCGATACGCCTCCTTA
CCCCGCAGACCCAACACTGCCCCCAGGTGCCTCACCAGCGTCGTGCAGTG
CCCGCCGCCCCGCTTGTTCGTCTCCGTCTCGCTCACCCCTTTTTCGGCGG
CCTCTTTTTCTGGCGCCCGTTGTCCCATGTTGCATTCTTCCAGCTTCCTA
CCAGAACCTGAGCTCTGGCCAGAGGTACCCTCTCTTGCTTCTCCTCCTCG
AACGGTTGGCGCACTCGCATCCGTCGTGCCGCCGTGAAACCTCTTGGAGT
CTGGTGCCGCGGGAGAGGATGAGAGGTCCCACATCGACGTCAGAGGAACG
ACGCTCGGGGACAAGAGGTCCACTCCGCTGCTATCCACGGGAGGCTCTGC
TGATTCACCACAGGCGGTGATTTTTCGCCAAACCGGCTGGCCGGGCCTCG
GCCGTCGATACGCCTCCTTACCCCGCAGACCCAACACTGCCCCCAGGTGC
CTCACCAGCGTCGTGCAGTGCCCGCCGCCCCGCTTGTTCGTCTCCGTCTC
GCTCACCCCTTTTTCGGCGGCCTCTTTTTCTGGCGCCCGTTGTCCCATGT
TGCATTCTTCCAGCTTCCTACCAGAACCTGAGCTCTGGCCAGAGGTACCC
TCTCTTGCTTCTCCTCCTCGAACGGTTGGCGCACTCGCATCCGTCGTGCC
GCCGTGAAACCTCTTGGAGTCTGGTGCCGCGGGAGAGGATGAGAGGTCCC
ACATCGACGTCAGAGGAACGACGCTCGGGGACAAGAGGTCCACTCCGCTG
CTATCCACGGGAGGCTCTGCTGATTCACCACAGGCGGTGA
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