mRNA_L-elsbetiae_contig10177.225.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10177.225.1
Unique NamemRNA_L-elsbetiae_contig10177.225.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10177.225.1 vs. uniprot
Match: A0A6H5KIA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA2_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 5.380e-44
Identity = 88/119 (73.95%), Postives = 96/119 (80.67%), Query Frame = 1 
Query:    1 IVQYTTLDEEGTVQELLETEKSQTEVLHMECKRTGEFAHSESTHYESGEAFNGEV------VLEEAGVERYVHLRSIDDEYEHLESTLPSRARNGGAAGGVGGSPPAEGLESGPDANEN 339
            IVQYTTLDEEG VQEL ETEKSQTEVLHMECKRTGEFAH ESTHYESGE FNGEV          + ++     RS+DDEYEHLESTLPSR R+GGAAGGVGG+P AEG+ESGP AN+N
Sbjct:  162 IVQYTTLDEEGAVQELFETEKSQTEVLHMECKRTGEFAHRESTHYESGETFNGEVGQHVTFAFFMSALQIQTSARSVDDEYEHLESTLPSRWRSGGAAGGVGGTPGAEGVESGPGANQN 280
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BLAST of mRNA_L-elsbetiae_contig10177.225.1 vs. uniprot
Match: A0A7S3XTY1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTY1_HETAK)

HSP 1 Score: 120 bits (301), Expect = 8.610e-30
Identity = 63/97 (64.95%), Postives = 73/97 (75.26%), Query Frame = 1 
Query:    1 IVQYTTLDEEGTVQELLETEKSQTEVLHMECKRTGEFAHSESTHYESGEAFNGEVVLEEAGVERYVHLRSIDDEYEHLESTLPSRARNGGAAGGVGG 291
            IV YTT+DE+G  QEL+ETEKSQTEVLHMECK TGEFAH E T YE  E FN EVV+ + G E YVHL+S +DE+EH+ES +P R   GG  GG GG
Sbjct:   29 IVVYTTVDEDGNQQELVETEKSQTEVLHMECKDTGEFAHREKTDYEQTETFNQEVVMAQRGNEEYVHLKSAEDEFEHMESNMPPRG--GGPGGGDGG 123
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BLAST of mRNA_L-elsbetiae_contig10177.225.1 vs. uniprot
Match: A0A6U4FDE0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4FDE0_9STRA)

HSP 1 Score: 113 bits (283), Expect = 5.760e-27
Identity = 58/96 (60.42%), Postives = 70/96 (72.92%), Query Frame = 1 
Query:    1 IVQYTTLDEEGTVQELLETEKSQTEVLHMECKRTGEFAHSESTHYESGEAFNGEVVLEEAGVERYVHLRSIDDEYEHLESTLPSRARNGGAAGGVG 288
            +V YTT+DEEG VQEL+ETEK+QTE+LHME K  GEFAH E+T+YES E  N E+V    G E YVHL+S +DEYEH+ES +P RA   GA    G
Sbjct:  268 VVHYTTIDEEGYVQELVETEKNQTEILHMETKDAGEFAHRETTNYESTEKLNNELVNASTGTEEYVHLKSQNDEYEHIESNMPPRAGATGAGQSAG 363
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BLAST of mRNA_L-elsbetiae_contig10177.225.1 vs. uniprot
Match: A0A7S2G1L3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G1L3_9STRA)

HSP 1 Score: 111 bits (278), Expect = 8.710e-27
Identity = 57/104 (54.81%), Postives = 73/104 (70.19%), Query Frame = 1 
Query:    1 IVQYTTLDEEGTVQELLETEKSQTEVLHMECKRTGEFAHSESTHYESGEAFNGEVVLEEAGVERYVHLRSIDDEYEHLESTLPSRARNGGAAGGVGGSPPAEGL 312
            IVQYTT+D +GTVQEL+ET++S  EV+H+ECK +GEF H E  + E  E FN EVV EE G E Y+HL+S +DEYEHL+S +P +     AA  + G  PAE L
Sbjct:  163 IVQYTTIDADGTVQELIETQRSHNEVVHLECKESGEFVHRERLNIEQWETFNNEVVSEERGHEEYLHLKSKEDEYEHLDSNMPKKEEEQQAAPAMDGEAPAEPL 266
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BLAST of mRNA_L-elsbetiae_contig10177.225.1 vs. uniprot
Match: A0A7S4QRT5_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QRT5_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.290e-23
Identity = 45/88 (51.14%), Postives = 65/88 (73.86%), Query Frame = 1 
Query:    1 IVQYTTLDEEGTVQELLETEKSQTEVLHMECKRTGEFAHSESTHYESGEAFNGEVVLEEAGVERYVHLRSIDDEYEHLESTLPSRARN 264
            IV+Y T++ +GTV EL+ET+K+Q+EVLHMECK TGEF H E T YE  E F+ E V  + G E Y+HL++++DEYE + S +P + ++
Sbjct:   62 IVKYITVEPDGTVHELVETDKNQSEVLHMECKDTGEFLHREHTEYEQTEKFDAEFVTADRGTEEYLHLKNLEDEYEFMNSDMPKKKQS 149
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BLAST of mRNA_L-elsbetiae_contig10177.225.1 vs. uniprot
Match: F0YE42_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YE42_AURAN)

HSP 1 Score: 103 bits (258), Expect = 1.440e-23
Identity = 53/87 (60.92%), Postives = 65/87 (74.71%), Query Frame = 1 
Query:    1 IVQYTTLDEEGTVQELLETEKSQTEVLHMECKRTGEFAHSESTHYESGEAFNGEVVLEEAGVERYVHLRSIDDEYEHLEST-LPSRA 258
            IVQYTT+D  G VQEL+ETE+S TEV+HMECK TGEFAH E++ YE  E FNG+ V E  G E Y HL+S +DE E +ES  +P+RA
Sbjct:  316 IVQYTTVDVSGAVQELVETERSSTEVVHMECKETGEFAHRETSEYEQLETFNGQAVAENRGNEEYYHLKSAEDEVEFMESNNMPNRA 402
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BLAST of mRNA_L-elsbetiae_contig10177.225.1 vs. uniprot
Match: A0A7S2RGV7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RGV7_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.780e-23
Identity = 50/87 (57.47%), Postives = 67/87 (77.01%), Query Frame = 1 
Query:    1 IVQYTTLDEEGTVQELLETEKSQTEVLHMECKRTGEFAHSESTHYESGEAFNGEVVLEEAGVERYVHLRSIDDEYEHLESTLPSRAR 261
            IV+YTT+D +G+ QEL+E E+++ EV+H+ECK TGEFAH E   YE  E FN E+V E+ G E+YVHL+S +DE+EHLEST   RA+
Sbjct:  193 IVEYTTVDPDGSTQELVEAERTRNEVVHIECKETGEFAHRELAEYEQTETFNKELVAEDRGHEQYVHLKSQEDEFEHLESTGKPRAQ 279
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BLAST of mRNA_L-elsbetiae_contig10177.225.1 vs. uniprot
Match: A0A7R9U4K7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4K7_9STRA)

HSP 1 Score: 100 bits (248), Expect = 8.530e-23
Identity = 55/98 (56.12%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:    4 VQYTTLDEEGTVQELLETEKSQTEVLHMECKRTGEFAHSESTHYESGEAFNGEVVLEEAGVERYVHLRSIDDEYEHLESTLPSRARNGGAAGGVGGSP 297
            V YTT+DE+G VQEL+E EK+QTE+LH E K TGEFAH E+T++E+ E FN ++V E  G E YVHL+S  DEYE  +S +P  A+N G A   GG+P
Sbjct:  237 VHYTTVDEDGFVQELVEIEKNQTEILHCEAKDTGEFAHRETTNFEAIETFNDDLVNERRGSEEYVHLKSKFDEYEKWDSNMP--AKNHGHADARGGAP 332
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BLAST of mRNA_L-elsbetiae_contig10177.225.1 vs. uniprot
Match: A0A7S2LAF0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LAF0_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.210e-21
Identity = 45/84 (53.57%), Postives = 62/84 (73.81%), Query Frame = 1 
Query:    1 IVQYTTLDEEGTVQELLETEKSQTEVLHMECKRTGEFAHSESTHYESGEAFNGEVVLEEAGVERYVHLRSIDDEYEHLESTLPS 252
            IV+Y TL+ +G+++EL+E EK Q EV+HMECK TG FAH E + +E  EAFNGE+V  + G E Y HL+S+DDEYE+ +   P+
Sbjct:  168 IVKYVTLNADGSLEELVEREKKQDEVVHMECKDTGIFAHHEHSQFEKTEAFNGELVAGQRGTEEYCHLKSLDDEYEYFDGPGPT 251
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BLAST of mRNA_L-elsbetiae_contig10177.225.1 vs. uniprot
Match: D7FGV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV1_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.410e-20
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 IVQYTTLDEEGTVQELLETEKSQTEVLHMECKRTGEFAHSESTHYESGEAF 153
            IVQYTTLDEEG VQEL ETEKSQTEVLHMECKRTGEFAH ESTHYESGEAF
Sbjct:  178 IVQYTTLDEEGAVQELFETEKSQTEVLHMECKRTGEFAHRESTHYESGEAF 228
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10177.225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KIA2_9PHAE5.380e-4473.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3XTY1_HETAK8.610e-3064.95Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U4FDE0_9STRA5.760e-2760.42Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2G1L3_9STRA8.710e-2754.81Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4QRT5_9STRA1.290e-2351.14Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
F0YE42_AURAN1.440e-2360.92Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2RGV7_9STRA1.780e-2357.47Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R9U4K7_9STRA8.530e-2356.12Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S2LAF0_9STRA2.210e-2153.57Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
D7FGV1_ECTSI1.410e-2094.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10177contigL-elsbetiae_contig10177:2611..4979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.2
Seed ortholog evalue8.1e-20
Seed eggNOG ortholog44056.XP_009038675.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2A68K@1,2RYBE@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size341
Cds size339
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10177.225.1prot_L-elsbetiae_contig10177.225.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10177 2612..4979 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815248.460772-CDS-L-elsbetiae_contig10177:2611..27881622815248.460772-CDS-L-elsbetiae_contig10177:2611..2788Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10177 2612..2788 -
1691682794.8016427-CDS-L-elsbetiae_contig10177:2611..27881691682794.8016427-CDS-L-elsbetiae_contig10177:2611..2788Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10177 2612..2788 -
1622815248.470868-CDS-L-elsbetiae_contig10177:4361..44871622815248.470868-CDS-L-elsbetiae_contig10177:4361..4487Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10177 4362..4487 -
1691682794.81416-CDS-L-elsbetiae_contig10177:4361..44871691682794.81416-CDS-L-elsbetiae_contig10177:4361..4487Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10177 4362..4487 -
1622815248.4831815-CDS-L-elsbetiae_contig10177:4943..49791622815248.4831815-CDS-L-elsbetiae_contig10177:4943..4979Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10177 4944..4979 -
1691682794.8229206-CDS-L-elsbetiae_contig10177:4943..49791691682794.8229206-CDS-L-elsbetiae_contig10177:4943..4979Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10177 4944..4979 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10177.225.1

>prot_L-elsbetiae_contig10177.225.1 ID=prot_L-elsbetiae_contig10177.225.1|Name=mRNA_L-elsbetiae_contig10177.225.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
IVQYTTLDEEGTVQELLETEKSQTEVLHMECKRTGEFAHSESTHYESGEA
FNGEVVLEEAGVERYVHLRSIDDEYEHLESTLPSRARNGGAAGGVGGSPP
AEGLESGPDANEN
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mRNA from alignment at L-elsbetiae_contig10177:2611..4979-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10177.225.1 ID=mRNA_L-elsbetiae_contig10177.225.1|Name=mRNA_L-elsbetiae_contig10177.225.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2369bp|location=Sequence derived from alignment at L-elsbetiae_contig10177:2611..4979- (Laminarionema elsbetiae ELsaHSoW15)
ATCGTTCAGTACACCACACTGGACGAGGAAGGGACGGTAAGGTTTCGCGT
TTTCGTAAATCTGCGGCAGATAGTTAGTGTTTCCCTGCGTACTCACGATG
CCGTAGTTTCTGAGTTTTGCTGCCAGAACCATGTTGTATTACATAGCCTG
TCATCGCGGGAAGGGTGACATCTTCGTTAGCTACAGCAGTCAGGGAGTGA
GGTAGGAGTAAGGGCTACCAAACTTTCTGAGAAAAGTGGCTGAGCGCACG
GCCAGGGCTGGTTGGATTTCAGTTTCGCAAGGAGTCGAAACTCGCTCTTT
CTAATCCAAGCCTCGAACACGCAGCCCGGTCGCATGTGCTACATTCCCCC
CGTTGTCCTCCAAGGCATGCTACCCCTCTTTTGTTTGGTCACTGACGGCG
CATGAAACAGCCCATTGCCTACTTGTAGTACAGCCTCCAACGCCTCTGTA
TCCGTGGGTACTCGTTGGGTCGCAACTGACTCCTGTGAGCAGGTCCAGGA
GCTGCTTGAGACCGAGAAAAGCCAGACCGAGGTGCTGCACATGGAGTGCA
AACGCACGGGCGAGTTCGCACACAGCGAGAGCACGCACTACGAGAGTGGC
GAGGCCTTCAACGGCGAGGTGGGTGGGTAGGCTTATGGTACCTTGGTTTT
ATCAAACGTGGGTATTCAAAATACGGCTGTGTGCTTAAATGCAGGTGCCA
TCAAACTCACCAGAACACCGCATGCTGGTTGCAAATAACCAAGTTGATTG
TTTCCATCGATTCCATCAGGGCCGGTCTTAACGACGAAATCAGAATCAGA
AATCGAAATCAGAATTGACTTTAAGTCCCAAAAGAGCCAAGGAACATACA
AAAATTTGCTGTGATTGGGGGATGCCATACAGCCCGGACTCTCGGAAGGG
GTTGGCAGTGAATCTTGCATACTTCAACATGATTCTGAAAAATGGTCAAA
ACAATTATTTGAAATCAGATTTACAAAAATTCAACCGAAGCGCAACCCAA
GATAGAAAACCTTCTGCAGTTTGCTGGGCTGTTCAGGCTTGAAAAGGGGC
GTGCGCTTTTGTCCCCGGCGTGTGCGGGCACCTGTGGCTACTGCCGTTGA
CATCTCTAGACGAAGAAGGCAGGCATGGAAATTGATGATGCAAAGCTTGC
CAACGCAAAAACCGAGAGGTGGTGACTCGCTCTGTGGCTGTAGATATCTT
ATCTGGAGGCTGGGCACAGCTTCCGACCCGGCAAAGGGTCATCACTGCTG
TTGTAGGCCATATCAGGGAATGCGGTTTGGACCACGAGCACCGCTCACTT
TCAGAGGTTATATAACTCATTAGTTTCTGTCTTGAAAGTCTTTGTGCCGG
CCGAGCTTGGTGATAATCTTCGTTTGCATCTCCCATCAGCTGCACGGTGC
TTTTTTGGCAGTTGCCAACGCGCGATCTGCAGATGGAAGTACACGATTGT
TCTACCGTAGGGGCACAAGCTCCCAGGAGGGCGACGCCTGGGCCCTCACA
CACTGGCACAGCACTAAGTGTATCGGAGAGTTCATGCTTAAAGGATGTCA
ACGCAAAAAACCAGAGTTCGCGGCGTTTGTTAGGCGATACGCATTCGAAG
CGTTGTGGAGCTCATGTCTGAACGGCCGTTGCTAGTCATAACTTGCGCTT
CAGTGCATCCCTCGGACTGCGATTTGGACCATGAGCATCCCTGGCTCTCA
GGAATGGTTAAATTGTCTGGTTTACGCGACGATTCACACTGCATCTGTCT
CCTTTGTCTTCCGACCCAATCTGGTTGTTTCTCCGCGATTTCAAGTCTGT
CCTTCGATTTTGATTTTGCGACGTGTCGATAAGACACACCCGGTCCAGTC
GACCCGAATACTTGGCTCTTTTGGGACTTAAAAGTAAATTCTGATTTCGA
TTTCTGATTATGATTTTGTCGTTCAGACCGGCTCTCAGCCAAGGAGAAAC
GGCCCCGTGGCTGCCACATGAACGTCAAACCGCCCGAATACCGACTAATT
TCACGTCTAAACACGTGCAGCGGCAGAAGCGAGCGGAAGCTCCTTTTTCG
GGAGCTTTTTTTGCCGATCGTAACGGTCATTCTACAGCCATTTTTACCAT
CTCGACCCGAGCATTAAAACCCGCTCTTCATCTGTATGTAGATAGCTTCC
TAAGCCATGCAGACAACCATTACTAATTGCATCCGAACCAGGTCGTGCTC
GAGGAAGCGGGGGTAGAGCGCTACGTGCACCTCAGGTCCATCGACGACGA
GTACGAACACTTGGAGTCGACGCTGCCGAGCCGCGCGCGCAACGGAGGAG
CGGCGGGTGGCGTAGGTGGTAGCCCTCCAGCGGAAGGATTAGAAAGCGGG
CCCGATGCAAACGAAAACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10177:2611..4979-

>mRNA_L-elsbetiae_contig10177.225.1 ID=mRNA_L-elsbetiae_contig10177.225.1|Name=mRNA_L-elsbetiae_contig10177.225.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig10177:2611..4979- (Laminarionema elsbetiae ELsaHSoW15)
ATCGTTCAGTACACCACACTGGACGAGGAAGGGACGATCGTTCAGTACAC
CACACTGGACGAGGAAGGGACGGTCCAGGAGCTGCTTGAGACCGAGAAAA
GCCAGACCGAGGTGCTGCACATGGAGTGCAAACGCACGGGCGAGTTCGCA
CACAGCGAGAGCACGCACTACGAGAGTGGCGAGGCCTTCAACGGCGAGGT
CCAGGAGCTGCTTGAGACCGAGAAAAGCCAGACCGAGGTGCTGCACATGG
AGTGCAAACGCACGGGCGAGTTCGCACACAGCGAGAGCACGCACTACGAG
AGTGGCGAGGCCTTCAACGGCGAGGTCGTGCTCGAGGAAGCGGGGGTAGA
GCGCTACGTGCACCTCAGGTCCATCGACGACGAGTACGAACACTTGGAGT
CGACGCTGCCGAGCCGCGCGCGCAACGGAGGAGCGGCGGGTGGCGTAGGT
GGTAGCCCTCCAGCGGAAGGATTAGAAAGCGGGCCCGATGCAAACGAAAA
CGTCGTGCTCGAGGAAGCGGGGGTAGAGCGCTACGTGCACCTCAGGTCCA
TCGACGACGAGTACGAACACTTGGAGTCGACGCTGCCGAGCCGCGCGCGC
AACGGAGGAGCGGCGGGTGGCGTAGGTGGTAGCCCTCCAGCGGAAGGATT
AGAAAGCGGGCCCGATGCAAACGAAAAC
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