mRNA_L-elsbetiae_contig10175.224.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10175.224.1
Unique NamemRNA_L-elsbetiae_contig10175.224.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10175.224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10175contigL-elsbetiae_contig10175:4580..5233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size305
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815248.3641102-CDS-L-elsbetiae_contig10175:4579..48231622815248.3641102-CDS-L-elsbetiae_contig10175:4579..4823Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10175 4580..4823 +
1691682794.76113-CDS-L-elsbetiae_contig10175:4579..48231691682794.76113-CDS-L-elsbetiae_contig10175:4579..4823Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10175 4580..4823 +
1622815248.3750348-CDS-L-elsbetiae_contig10175:5172..52311622815248.3750348-CDS-L-elsbetiae_contig10175:5172..5231Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10175 5173..5231 +
1691682794.7695158-CDS-L-elsbetiae_contig10175:5172..52311691682794.7695158-CDS-L-elsbetiae_contig10175:5172..5231Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10175 5173..5231 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10175.224.1prot_L-elsbetiae_contig10175.224.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10175 4580..5231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10175.224.1

>prot_L-elsbetiae_contig10175.224.1 ID=prot_L-elsbetiae_contig10175.224.1|Name=mRNA_L-elsbetiae_contig10175.224.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
IDSYLALRAKKARWTAQIGIEAGEGMSGSEAGAVIGTGWNLLPTALHTAT
IEAGAGDATAAGTAADDAVAGAEAGRGTEDKDRPIEGEAGTEEPGGGRPK
V
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mRNA from alignment at L-elsbetiae_contig10175:4580..5233+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10175.224.1 ID=mRNA_L-elsbetiae_contig10175.224.1|Name=mRNA_L-elsbetiae_contig10175.224.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig10175:4580..5233+ (Laminarionema elsbetiae ELsaHSoW15)
ATCGATTCCTATCTTGCACTTCGTGCTAAAAAAGCGAGATGGACAGCCCA
GATAGGTATCGAAGCAGGAGAGGGCATGAGCGGGAGCGAAGCAGGGGCGG
TGATCGGCACGGGGTGGAACCTCCTGCCTACGGCACTGCATACAGCGACG
ATCGAAGCAGGAGCCGGAGACGCGACAGCAGCCGGGACAGCAGCAGACGA
CGCAGTAGCAGGAGCAGAAGCAGGGAGGGGAACCGAGGACAAAGGTGATG
TGTGTCTGCGGGTGCACGCAACACGCAATGAAAGAGAGAGAGAGGGGCAA
GCAGCGAATCCTTCCTCGCAGCAAAATGAGACAGGCCGGTTGTGTGAAAA
GAGACGATGCGATGGGACAACAGAGCAGAGAGAGAGAGAGAGAGAGGCGC
TGGGGATCCAGGGCTCTCTTTCTCTTCTCCTCCTCCTCTCCGCTGACCCG
CTCTCCACACTCCCTTGGTTGAGGTGGAGGGGGACGAGTGTGCATCAACT
AAACTCCCTTGATGATGCTGTTCCTGCTGCGCCATTCCCTTTTCGGCCTG
CGGCTGGATGCAAAAACACAAAAAAAAAATATAAATGACCCAGATCGTCC
GATCGAGGGAGAGGCGGGGACAGAGGAGCCGGGCGGCGGGAGACCGAAAG
TGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10175:4580..5233+

>mRNA_L-elsbetiae_contig10175.224.1 ID=mRNA_L-elsbetiae_contig10175.224.1|Name=mRNA_L-elsbetiae_contig10175.224.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig10175:4580..5233+ (Laminarionema elsbetiae ELsaHSoW15)
ATCGATTCCTATCTTGCACTTCGTGCTAAAAAAGCGAGATGGACAGCCCA
GATAGGTATCGAAGCAGGAGAGGGCATGAGCGGGAGCGAAGCAGGGGCGG
TGATCGGCACGGGGTGGAACCTCCTGCCTACGGCACTGCATACAGCGACG
ATCGAAGCAGGAGCCGGAGACGCGACAGCAGCCGGGACAGCAGCAGACGA
CGCAGTAGCAGGAGCAGAAGCAGGGAGGGGAACCGAGGACAAAGATCGAT
TCCTATCTTGCACTTCGTGCTAAAAAAGCGAGATGGACAGCCCAGATAGG
TATCGAAGCAGGAGAGGGCATGAGCGGGAGCGAAGCAGGGGCGGTGATCG
GCACGGGGTGGAACCTCCTGCCTACGGCACTGCATACAGCGACGATCGAA
GCAGGAGCCGGAGACGCGACAGCAGCCGGGACAGCAGCAGACGACGCAGT
AGCAGGAGCAGAAGCAGGGAGGGGAACCGAGGACAAAGATCGTCCGATCG
AGGGAGAGGCGGGGACAGAGGAGCCGGGCGGCGGGAGACCGAAAGTGATC
GTCCGATCGAGGGAGAGGCGGGGACAGAGGAGCCGGGCGGCGGGAGACCG
AAAGTG
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