mRNA_L-elsbetiae_contig10164.217.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10164.217.1
Unique NamemRNA_L-elsbetiae_contig10164.217.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10164.217.1 vs. uniprot
Match: D7G461_ECTSI (JMJD6 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G461_ECTSI)

HSP 1 Score: 495 bits (1275), Expect = 1.310e-172
Identity = 233/253 (92.09%), Postives = 245/253 (96.84%), Query Frame = 1
Query:    1 RFGDCKLKCGEDDDGYSVKVKLKYFLRYMEYQTDDSPLYIFDSHFDDHEVAKGLLEGFSVPRYFPDDLFSLVGERRRPPYRWFLVGPKRSGTSVHIDPLGTSAWNTVVSGRKLWVLFPPHVDKNVAKGKDVMRQGEDDEPINYFVDLLPRIRRKYRDSIKIYEFIQYPGDTVFVPGGWWHAVLNLEDSVAITQNFCSRNNFEKVWRKTRTGRKKMSVKWLRELDKEYPSLAETARRLNAEDGFVMMTKDGSRR 759
            R+GDCKLKCGEDDDGYSVKVKLKYFLRYM++QTDDSPLYIFDSHFDDHEVAKGLLE F VP YFPDDLFSLVGERRRPPYRWFLVGPKRSGTSVHIDPLGTSAWNTVVSGRKLWVLFPPHVDKNVAKGKDV+RQGEDDEPINYFVDLLPRIRRK+ +SIKIYEF+QYPGDTVFVPGGWWHAVLNLEDSVAITQNFCSRNNFEKVWRKTRTGRKKMSVKWL+ELDKE+PSLA+TARRLN+EDGFVM+ K  S R
Sbjct:  122 RYGDCKLKCGEDDDGYSVKVKLKYFLRYMDHQTDDSPLYIFDSHFDDHEVAKGLLEDFFVPHYFPDDLFSLVGERRRPPYRWFLVGPKRSGTSVHIDPLGTSAWNTVVSGRKLWVLFPPHVDKNVAKGKDVIRQGEDDEPINYFVDLLPRIRRKHGNSIKIYEFVQYPGDTVFVPGGWWHAVLNLEDSVAITQNFCSRNNFEKVWRKTRTGRKKMSVKWLKELDKEHPSLADTARRLNSEDGFVMVDKGASSR 374          
BLAST of mRNA_L-elsbetiae_contig10164.217.1 vs. uniprot
Match: A0A8K1CVA6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CVA6_PYTOL)

HSP 1 Score: 372 bits (955), Expect = 2.590e-124
Identity = 169/252 (67.06%), Postives = 208/252 (82.54%), Query Frame = 1
Query:   10 DCK---LKCGEDDDGYSVKVKLKYFLRYMEYQTDDSPLYIFDSHFDDHEVAKGLLEGFSVPRYFPDDLFSLVGERRRPPYRWFLVGPKRSGTSVHIDPLGTSAWNTVVSGRKLWVLFPPHVDKNVAKGKDVMRQGEDDEPINYFVDLLPRIRRKYR-DSIKIYEFIQYPGDTVFVPGGWWHAVLNLEDSVAITQNFCSRNNFEKVWRKTRTGRKKMSVKWLRELDKEYPSLAETARRLNAEDGFVMMTKDGS 753
            +CK   LKCGEDDDG S+++K KYF +Y++ QTDDSPLYIFDS FDD E  K LL  ++VPRYFP+DLFSLVGE RRPPYRWFLVGPKRSGT VH+DPLGTSAWNT++ GRK WVLFPPHV K + KGK  +++GEDDE +NYF+D+LPRI++ +  + ++  E +QYPGDT+FVPGGWWHAV N+ED+VA+TQN+CS  NFE+VWRKTRTGRK+M+VKW ++L K +P LA  A +LN EDGFVM  KDGS
Sbjct:  129 NCKRAMLKCGEDDDGKSIRMKFKYFYKYLKLQTDDSPLYIFDSSFDDREDTKPLLADYAVPRYFPEDLFSLVGEDRRPPYRWFLVGPKRSGTCVHLDPLGTSAWNTLLVGRKRWVLFPPHVSKEIVKGKSHIKKGEDDEAVNYFMDILPRIKKAHSPEELQCIELMQYPGDTIFVPGGWWHAVFNVEDTVAVTQNYCSSQNFERVWRKTRTGRKRMAVKWFQKLQKHHPQLATLAVKLNREDGFVMRHKDGS 380          
BLAST of mRNA_L-elsbetiae_contig10164.217.1 vs. uniprot
Match: K3X3W1_GLOUD (JmjC domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X3W1_GLOUD)

HSP 1 Score: 359 bits (921), Expect = 4.920e-120
Identity = 161/244 (65.98%), Postives = 203/244 (83.20%), Query Frame = 1
Query:   16 KLKCGEDDDGYSVKVKLKYFLRYMEYQTDDSPLYIFDSHFDDHEVAKGLLEGFSVPRYFPDDLFSLVGERRRPPYRWFLVGPKRSGTSVHIDPLGTSAWNTVVSGRKLWVLFPPHVDKNVAKGKDVMRQGEDDEPINYFVDLLPRIRRKYR-DSIKIYEFIQYPGDTVFVPGGWWHAVLNLEDSVAITQNFCSRNNFEKVWRKTRTGRKKMSVKWLRELDKEYPSLAETARRLNAEDGFVMMTK 744
            +LKCGEDDDG S+++K KYF++Y+E+QTDDSPLYIFDS FD+    K LL+ + VPRYF +DLFSLVGE RRPPYRWFLVGPKRSGT +H+DPLGTSAWNT++ GRK WVLFPP V K+V KGK  +R  EDDE +NYF+D+LPRI+R +  + ++  E +QYPGDT+FVPGGWWHAV N+ED+VA+TQNFCS  NFE+VWRKTR+GRK+M+VKWL +L+K++P LA  A+ LNA+D +VM  K
Sbjct:   91 QLKCGEDDDGKSIRMKFKYFMKYLEHQTDDSPLYIFDSTFDEKADTKPLLDDYKVPRYFNEDLFSLVGEDRRPPYRWFLVGPKRSGTCIHLDPLGTSAWNTLLVGRKRWVLFPPDVPKHVVKGKHHVRPSEDDEAVNYFMDILPRIKRAHPPEMLRCIELMQYPGDTIFVPGGWWHAVFNVEDTVAVTQNFCSSQNFERVWRKTRSGRKRMAVKWLTKLEKKHPHLAALAKELNAQDNYVMYNK 334          
BLAST of mRNA_L-elsbetiae_contig10164.217.1 vs. uniprot
Match: A0A484E8M1_BRELC (JmjC domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E8M1_BRELC)

HSP 1 Score: 358 bits (919), Expect = 6.800e-119
Identity = 161/250 (64.40%), Postives = 203/250 (81.20%), Query Frame = 1
Query:    1 RFGDCKLKCGEDDDGYSVKVKLKYFLRYMEYQTDDSPLYIFDSHFDDHEVAKGLLEGFSVPRYFPDDLFSLVGERRRPPYRWFLVGPKRSGTSVHIDPLGTSAWNTVVSGRKLWVLFPPHVDKNVAKGKDVMRQGEDDEPINYFVDLLPRIRRKYRD-SIKIYEFIQYPGDTVFVPGGWWHAVLNLEDSVAITQNFCSRNNFEKVWRKTRTGRKKMSVKWLRELDKEYPSLAETARRLNAEDGFVMMTKD 747
            ++   + KCGEDD G S+++KLKYFL Y+ YQ DDSPLYIFDS FDDH   K LLE + VP+YFP+DLFSLVGE RRPPYRWFL+GPKRSGT++HIDPLGTSAWNT++ GRK W+LFPPH+ K++  GK  +R  EDDE +NYF+DLLPRI++     S++  EF+QYPG+TVF+PGGWWHAVLN+ED+VA+TQNFCS  NF  VWRKTR GRK+M+VKWLR+L+ +YP LA  A +LN +D +VM +K+
Sbjct:  142 KYKRVEFKCGEDDYGKSIRMKLKYFLIYLTYQIDDSPLYIFDSSFDDHVDTKSLLEDYQVPKYFPEDLFSLVGEDRRPPYRWFLIGPKRSGTTLHIDPLGTSAWNTLIVGRKRWILFPPHLPKHIVNGKKHVRGNEDDEAVNYFMDLLPRIKQANSSKSLQCIEFMQYPGETVFIPGGWWHAVLNVEDTVAVTQNFCSSQNFPAVWRKTRKGRKRMAVKWLRKLELQYPELAVVATKLNQKDKYVMYSKE 391          
BLAST of mRNA_L-elsbetiae_contig10164.217.1 vs. uniprot
Match: A0A7S3GT28_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GT28_9STRA)

HSP 1 Score: 362 bits (930), Expect = 4.320e-118
Identity = 164/253 (64.82%), Postives = 200/253 (79.05%), Query Frame = 1
Query:    1 RFGDCKLKCGEDDDGYSVKVKLKYFLRYMEYQTDDSPLYIFDSHFDDHEVAKGLLEGFSVPRYFPDDLFSLVGERRRPPYRWFLVGPKRSGTSVHIDPLGTSAWNTVVSGRKLWVLFPPHVDKNVAKGKDVMRQGEDDEPINYFVDLLPRIRRKYRDSIKIYEFIQYPGDTVFVPGGWWHAVLNLEDSVAITQNFCSRNNFEKVWRKTRTGRKKMSVKWLRELDKEYPSLAETARRLNAEDGFVMMTKDGSRR 759
            RF D   KCGEDDDGY VK +LKYFL+YM+   DDSPLY+FD +FD  ++++ LL  + VP YF DDLFSLVGE+RRPPYRW L+GP+RSG+SVHIDPL TSAWNT++ GRK WVLFPP   K++AKG DV+++GEDDE INYFVD+LPRIR K+  ++KIYE IQ PG+T+FVPGGWWH VLNLED++A+TQNFCS  NF  VWR TR GR KMSV+WL+EL K+YP LA  A  LN +D F M  K+  R+
Sbjct:  111 RFKDRYFKCGEDDDGYKVKTRLKYFLKYMKNNKDDSPLYVFDGNFDGDDISRSLLADYKVPSYFTDDLFSLVGEKRRPPYRWILLGPERSGSSVHIDPLATSAWNTILVGRKRWVLFPPETPKSIAKGLDVIQKGEDDEAINYFVDMLPRIREKHGHNLKIYELIQEPGETIFVPGGWWHGVLNLEDTIAVTQNFCSCTNFPSVWRSTRKGRPKMSVRWLKELAKQYPDLAAQALLLNDQDQFAMYNKEADRK 363          
BLAST of mRNA_L-elsbetiae_contig10164.217.1 vs. uniprot
Match: A0A6V1R424_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1R424_HETAK)

HSP 1 Score: 355 bits (910), Expect = 1.890e-117
Identity = 164/245 (66.94%), Postives = 196/245 (80.00%), Query Frame = 1
Query:    1 RFGDCKLKCGEDDDGYSVKVKLKYFLRYMEYQTDDSPLYIFDSHFDDHEVAKGLLEGFSVPRYFPDDLFSLVGERRRPPYRWFLVGPKRSGTSVHIDPLGTSAWNTVVSGRKLWVLFPPHVDKNVAKGKDVMRQGEDDEPINYFVDLLPRIRRKYRDSIKIYEFIQYPGDTVFVPGGWWHAVLNLEDSVAITQNFCSRNNFEKVWRKTRTGRKKMSVKWLRELDKEYPSLAETARRLNAEDGFVM 735
            ++GD K KCGEDDDGYSVKV++K+FL Y+E Q DDSPLY+FDS FDD +    LL  F+VP YFP+DLF LVGER+RPPYRWFLVGPKRSGTSVHIDPLGTSAWNTVVSG K WVLFPP   K+V KGK VM+ GEDDEPINYFVD LPR+R+    ++K  EF+QYPG+T++VP  WWHAVLNL D++A+TQNFCSR NF+ VWRK+R+GRK MS +W R L++ +P LA  A  LN  DG+  
Sbjct:   12 QYGDAKFKCGEDDDGYSVKVRMKHFLDYVERQADDSPLYVFDSGFDDKKETAPLLGDFAVPSYFPEDLFQLVGERKRPPYRWFLVGPKRSGTSVHIDPLGTSAWNTVVSGIKRWVLFPPGTAKHVVKGKHVMKSGEDDEPINYFVDFLPRMRKDV--NLKAMEFLQYPGETIYVPCNWWHAVLNLTDTIAVTQNFCSRQNFDGVWRKSRSGRKGMSRRWYRLLEEHHPDLAARAAALNRADGYAF 254          
BLAST of mRNA_L-elsbetiae_contig10164.217.1 vs. uniprot
Match: A0A4D9CR63_9STRA (JmjC domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CR63_9STRA)

HSP 1 Score: 355 bits (911), Expect = 3.040e-117
Identity = 166/243 (68.31%), Postives = 198/243 (81.48%), Query Frame = 1
Query:   19 LKCGEDDDGYSVKVKLKYFLRYMEYQTDDSPLYIFDSHFDDHEVAKGLLEGFSVPRYFPDDLFSLVGERRRPPYRWFLVGPKRSGTSVHIDPLGTSAWNTVVSGRKLWVLFPPHVDKNVAKGKDVMRQGEDDEPINYFVDLLPRIRR-KYRDSIKIYEFIQYPGDTVFVPGGWWHAVLNLEDSVAITQNFCSRNNFEKVWRKTRTGRKKMSVKWLRELDKEYPSLAETARRLNAEDGFVMMTK 744
             KCGEDDDG SV+V+LK+F +Y+  Q DDSPLYIFDS +DD++ AK LL+ + VP YFPDD FSLVGERRRPPYRWFLVGP+RSGTS+HIDPLGTSAWNTV++GRK WVLFPP    ++AKGK + R+GEDDEPINYFVD+LPR+R     + +  +EFIQ  G+TVFVPGGWWHAVLNLEDSVA+TQNF SR NF  VWRKTR+GRKKM+ +WL +LD+ YP L   AR+LN  D F M+TK
Sbjct:  113 FKCGEDDDGRSVRVRLKHFFKYLAKQKDDSPLYIFDSTYDDNKEAKVLLDDYKVPSYFPDDFFSLVGERRRPPYRWFLVGPRRSGTSLHIDPLGTSAWNTVLTGRKRWVLFPPRTSASLAKGKALYRKGEDDEPINYFVDILPRMRSLPATEGLVFHEFIQEAGETVFVPGGWWHAVLNLEDSVAVTQNFASRANFSAVWRKTRSGRKKMAWRWLMKLDESYPELGRLARKLNEMDDFHMLTK 355          
BLAST of mRNA_L-elsbetiae_contig10164.217.1 vs. uniprot
Match: A0A024GP98_9STRA (JmjC domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GP98_9STRA)

HSP 1 Score: 352 bits (903), Expect = 4.170e-117
Identity = 158/249 (63.45%), Postives = 200/249 (80.32%), Query Frame = 1
Query:    1 RFGDCKLKCGEDDDGYSVKVKLKYFLRYMEYQTDDSPLYIFDSHFDDHEVAKGLLEGFSVPRYFPDDLFSLVGERRRPPYRWFLVGPKRSGTSVHIDPLGTSAWNTVVSGRKLWVLFPPHVDKNVAKGKDVMRQGEDDEPINYFVDLLPRIRRKYR-DSIKIYEFIQYPGDTVFVPGGWWHAVLNLEDSVAITQNFCSRNNFEKVWRKTRTGRKKMSVKWLRELDKEYPSLAETARRLNAEDGFVMMTK 744
            ++    LKCGEDD G ++++KLKYFLRY++ QTDDSPLYIFDS FD+    K LL+ +SVP+YFP+DLF  VGERRRPPYRWFL+GPKRSGT VH+DPLGTSAWNT++SGRK W+LFP  V K + +GK+ +R GEDDE INYF  +LPRI++ Y  D ++  EF+QYPG TVFVPGGWWHAVLN+ED+VA+TQN+CS  NFE+VWRKTR+GRK+M+VKWL++L +  P LA  A + N +D F M +K
Sbjct:  136 KYKSAMLKCGEDDKGRTIRMKLKYFLRYLKVQTDDSPLYIFDSSFDERSDTKPLLDEYSVPKYFPEDLFEFVGERRRPPYRWFLIGPKRSGTCVHVDPLGTSAWNTLISGRKRWILFPYQVGKKIVQGKEFIRAGEDDEAINYFSTILPRIKKAYGFDVLQCIEFMQYPGQTVFVPGGWWHAVLNVEDTVAVTQNYCSSQNFERVWRKTRSGRKRMAVKWLQKLQQHRPDLARLAIKCNEQDRFQMYSK 384          
BLAST of mRNA_L-elsbetiae_contig10164.217.1 vs. uniprot
Match: A0A2D4CAV4_PYTIN (Histone arginine demethylase, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAV4_PYTIN)

HSP 1 Score: 359 bits (922), Expect = 8.600e-117
Identity = 162/245 (66.12%), Postives = 201/245 (82.04%), Query Frame = 1
Query:   19 LKCGEDDDGYSVKVKLKYFLRYMEYQTDDSPLYIFDSHFDDHEVAKGLLEGFSVPRYFPDDLFSLVGERRRPPYRWFLVGPKRSGTSVHIDPLGTSAWNTVVSGRKLWVLFPPHVDKNVAKGKDVMRQGEDDEPINYFVDLLPRIRRKYRDS-IKIYEFIQYPGDTVFVPGGWWHAVLNLEDSVAITQNFCSRNNFEKVWRKTRTGRKKMSVKWLRELDKEYPSLAETARRLNAEDGFVMMTKDG 750
            LKCGEDDDG ++++K KYF++Y+++QTDDSPLYIFDS FDD +  K LL+ + VP+YFP+DLF LVGE RRPPYRWFLVGPKRSGT VH+DPLGTSAWNT++ GRK WVLFPP V K++ KGK+ +  GEDDE +NYF+D+LPRI++    + +K  EF+QYPG TVFVPGGWWHAV N+ED++A+TQNFCS  NFE+VWRKTRTGRK+M+VKW ++L+K  P LA  A RLN ED F M  KDG
Sbjct:  163 LKCGEDDDGKTIRMKFKYFMKYLKHQTDDSPLYIFDSSFDDRKDTKPLLDDYRVPKYFPEDLFELVGEDRRPPYRWFLVGPKRSGTCVHLDPLGTSAWNTLLVGRKRWVLFPPEVSKHIVKGKNHVLPGEDDEAVNYFMDILPRIKKATPAAELKCVEFMQYPGQTVFVPGGWWHAVFNVEDTIAVTQNFCSSQNFERVWRKTRTGRKRMAVKWFQKLEKHNPRLAAIAFRLNQEDDFTMRNKDG 407          
BLAST of mRNA_L-elsbetiae_contig10164.217.1 vs. uniprot
Match: V9EZE5_PHYPR (JmjC domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=V9EZE5_PHYPR)

HSP 1 Score: 353 bits (905), Expect = 1.080e-116
Identity = 160/247 (64.78%), Postives = 201/247 (81.38%), Query Frame = 1
Query:   16 KLKCGEDDDGYSVKVKLKYFLRYMEYQTDDSPLYIFDSHFDDHEVAKGLLEGFSVPRYFPDDLFSLVGERRRPPYRWFLVGPKRSGTSVHIDPLGTSAWNTVVSGRKLWVLFPPHVDKNVAKGKDVMRQGEDDEPINYFVDLLPRIRRKYR-DSIKIYEFIQYPGDTVFVPGGWWHAVLNLEDSVAITQNFCSRNNFEKVWRKTRTGRKKMSVKWLRELDKEYPSLAETARRLNAEDGFVMMTKDGS 753
            +LKCGEDD G S+++K KYF+ YM  QTDDSPLYIFDS FDDH+  K LL+ + VP+YFP+DLFSLVGE RRPPYRWFLVGPKRSGT++H+DPLGTSAWNT++ GRK WVLFPPH+ KN+  GK  +R  EDDE +NYF+DLLPRI+R    ++++  EF+QYPG+TVF+PGGWWHAV N++D+VA+TQNFCS  NF  VWRKTR+GRK+M+VKWL++L+   P LA  A  LN +D FVM +K+ S
Sbjct:  156 QLKCGEDDYGKSIRMKFKYFVTYMNNQTDDSPLYIFDSTFDDHKDTKPLLDDYKVPKYFPEDLFSLVGEDRRPPYRWFLVGPKRSGTTLHLDPLGTSAWNTLIVGRKRWVLFPPHLPKNLVNGKKHIRGDEDDEAVNYFMDLLPRIKRANAPETLQCIEFMQYPGETVFIPGGWWHAVFNVDDTVAVTQNFCSSQNFPAVWRKTRSGRKRMAVKWLKKLETHNPELAALATELNQKDKFVMYSKESS 402          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10164.217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G461_ECTSI1.310e-17292.09JMJD6 protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A8K1CVA6_PYTOL2.590e-12467.06Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3X3W1_GLOUD4.920e-12065.98JmjC domain-containing protein n=1 Tax=Globisporan... [more]
A0A484E8M1_BRELC6.800e-11964.40JmjC domain-containing protein n=1 Tax=Bremia lact... [more]
A0A7S3GT28_9STRA4.320e-11864.82Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A6V1R424_HETAK1.890e-11766.94Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9CR63_9STRA3.040e-11768.31JmjC domain-containing protein n=2 Tax=Monodopsida... [more]
A0A024GP98_9STRA4.170e-11763.45JmjC domain-containing protein n=1 Tax=Albugo cand... [more]
A0A2D4CAV4_PYTIN8.600e-11766.12Histone arginine demethylase, putative n=1 Tax=Pyt... [more]
V9EZE5_PHYPR1.080e-11664.78JmjC domain-containing protein n=8 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10164contigL-elsbetiae_contig10164:3946..6830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score500.4
Seed ortholog evalue6.5e-139
Seed eggNOG ortholog2880.D7G461
KEGG koko:K11323
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine
EggNOG OGsKOG2130@1,KOG2130@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Ec32 ortholog descriptionJumonji domain protein
Ec32 orthologEc-02_001410.1
Exons5
Model size981
Cds size981
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10164.217.1prot_L-elsbetiae_contig10164.217.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10164 3946..6830 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815247.7090046-CDS-L-elsbetiae_contig10164:3945..43171622815247.7090046-CDS-L-elsbetiae_contig10164:3945..4317Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10164 3946..4317 -
1691682794.376803-CDS-L-elsbetiae_contig10164:3945..43171691682794.376803-CDS-L-elsbetiae_contig10164:3945..4317Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10164 3946..4317 -
1622815247.7193484-CDS-L-elsbetiae_contig10164:4504..46931622815247.7193484-CDS-L-elsbetiae_contig10164:4504..4693Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10164 4505..4693 -
1691682794.387564-CDS-L-elsbetiae_contig10164:4504..46931691682794.387564-CDS-L-elsbetiae_contig10164:4504..4693Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10164 4505..4693 -
1622815247.7298536-CDS-L-elsbetiae_contig10164:4942..51201622815247.7298536-CDS-L-elsbetiae_contig10164:4942..5120Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10164 4943..5120 -
1691682794.395586-CDS-L-elsbetiae_contig10164:4942..51201691682794.395586-CDS-L-elsbetiae_contig10164:4942..5120Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10164 4943..5120 -
1622815247.7438798-CDS-L-elsbetiae_contig10164:6138..63231622815247.7438798-CDS-L-elsbetiae_contig10164:6138..6323Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10164 6139..6323 -
1691682794.4063478-CDS-L-elsbetiae_contig10164:6138..63231691682794.4063478-CDS-L-elsbetiae_contig10164:6138..6323Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10164 6139..6323 -
1622815247.7535641-CDS-L-elsbetiae_contig10164:6773..68301622815247.7535641-CDS-L-elsbetiae_contig10164:6773..6830Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10164 6774..6830 -
1691682794.4147685-CDS-L-elsbetiae_contig10164:6773..68301691682794.4147685-CDS-L-elsbetiae_contig10164:6773..6830Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10164 6774..6830 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10164.217.1

>prot_L-elsbetiae_contig10164.217.1 ID=prot_L-elsbetiae_contig10164.217.1|Name=mRNA_L-elsbetiae_contig10164.217.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=327bp
RFGDCKLKCGEDDDGYSVKVKLKYFLRYMEYQTDDSPLYIFDSHFDDHEV
AKGLLEGFSVPRYFPDDLFSLVGERRRPPYRWFLVGPKRSGTSVHIDPLG
TSAWNTVVSGRKLWVLFPPHVDKNVAKGKDVMRQGEDDEPINYFVDLLPR
IRRKYRDSIKIYEFIQYPGDTVFVPGGWWHAVLNLEDSVAITQNFCSRNN
FEKVWRKTRTGRKKMSVKWLRELDKEYPSLAETARRLNAEDGFVMMTKDG
SRRSNTDRDSEGGEQGNRKKKHGKRKGGGSEGSGSSGGGGGEDEGESGSG
SSSFKRGRKYGSDGSRDGSVYNGSTG*
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mRNA from alignment at L-elsbetiae_contig10164:3946..6830-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10164.217.1 ID=mRNA_L-elsbetiae_contig10164.217.1|Name=mRNA_L-elsbetiae_contig10164.217.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2885bp|location=Sequence derived from alignment at L-elsbetiae_contig10164:3946..6830- (Laminarionema elsbetiae ELsaHSoW15)
AGGTTCGGCGACTGTAAGCTCAAGTGCGGAGAAGATGACGACGGCTATTC TGTCAAGGTGACTGTTTTATGTTCACGTGAAAGCACCCAACAACATGCGA CAGAGTAGTTACCACCCCCGGCAGCTTCGCTTCGTCGCTGGTGAATCGGA TTAGGAGTACGTGGCGTCCTTCGTGTGTTCTGTATTTGGGTTTGACCCTT CTTCGGACATTTGCATCGGTCCGCACGCAACCGTTGGAGTGGTGCCGACA CCGGCAAGGACCCTTTGAAGAATCAAGGATTCCAGAGGACAGGTTTTAGG CAAGGCTGTGGGCCGAAATCATAGATTAAAACTTTTTCTGGTGCCGTAGT ATCGCGTTTTGACCTGATGACCGACCATTTTGTAGTCGCACTGCTGCTGC ACTCGGGGTGATGTTGCACACCGCGCCATATTGAAACTGCGGGATTCTTG ACAACGTCGCACCCTTCTTTTATCGACCCGTCAAATTATGTCGTCCTTTA ATTCAAGGTAAAGCTGAAGTACTTCCTGCGCTACATGGAGTACCAGACGG ACGACAGCCCGTTATACATATTCGACAGTCACTTCGATGATCACGAGGTG GCCAAGGGCCTGCTCGAAGGTTTCTCCGTTCCAAGATACTTCCCAGACGA CCTGTTTTCGTTGGTCGGAGAGAGACGCCGACCGCCCTACAGGTGACTAG CTCGCATGACCTTGGAGTCTAGAATTTTCAATTTTGACCCATACTTTTTT TGGCCCGAAAACTTTGTTAAATATCTTGATATTTCAAACATTTTCCCAAC AACATTATGGGATCACTTTTTATGAGAGCAAATCTTTGGCAAAATGTTAA TGTTGCCGAAAGGTTTTCAAATGGGCCAAAAGTTGCTCTCTCGAGCAAAT GTTCGAGCAACATTTCTGAAATGGATGGAGCACTCTCGAAAATGTTTTTC GAAGCGCGGCGGGATTGTAAGCTTACCATGCTTCAGTCAACAACACCAAC CACTGCGCGATGAATGCTAAACGTAGGAAGCTTAAGAGGGCTCCAGGGAA CCCTAGAGTGACCGTGTCAATATATTGGTGGCTGATACCTGATGGCAGCT CGTCAGACGAGCCAAAAAAAATGAACATGCAGGATGGTTGATGGTGTCAA CGACAAGGAAGAAGCGTGCCTTTGTGTCTCTGAACGGCAAAAAGGCCCCG CATTTGAGAGAGACGTGGCTACAAAACTAACTAGTCTCATCCGCTGGACT ATGTATTCACTTTTTGTCTTGTTGGCTGTCACCTCACATGACTACTTTCA TCTGGATGCGCGTGTTGTGGCAGTGGTCTGTGTCAATTAGCAAAGAGGGG CGTGGCTGTGTACCCGAGAGGTTGGAATTCTTTTTTTGCGGCGGGGGAAC AAGCAGTGATAAAAATTGGCCGATGTTGTTTTTTCAACATCGTTGTGCGC ACGCCGATGGGTCTCCCTGCCGATTGAGTAAAGCCGCTGCCACCACACGC GCATCGGGATGAAAGCAGCGGAGTGAGGTGACAGCCGAGAAGGCCATGCA TGAATACACGGTCGAGCGGATGAGAGCTGGTTAAGTTTGCAGTCTTGTGT GCTCTCCAAGAGCCGTTGGAAGCGCTGTGACGTACGTTTCTATATATGGT TTAAGTCATCACACACACAGCAGTAACACACAACCCCCGCTCACTACCTG CCGGCTACAGGTGGTTTTTGGTTGGTCCAAAACGCTCCGGAACGTCCGTG CACATTGATCCGCTTGGCACGAGTGCTTGGAACACCGTAGTGAGCGGGAG GAAGCTCTGGGTGCTCTTCCCGCCGCACGTGGACAAGAATGTGGCTAAGG GAAAGGACGTGATGAGGCAGGGTGAAGACGACGAGCCGGTGAGGTTTGTT TGGCACCCACGTTGAACCAATCCCACCGAAGTGTAACTTTGGTGTAATGT AGTCAATTACCATCCTCACCTTCGCGTTGATTATTTCCCGTGCGCGCAGG TTTTTGAGGCATGCAGTCGCGAAGGTTTGGATCCCTTTTTGAAAGAGGGG TTGTGTGTTGACGTGCAAGGCAAGCCCGTATCATGTCCCGCCCGGCCCAA GCAATAGCAATCCGTGTGTGCTTGGATCTGTCCGCAGATCAACTACTTCG TGGACCTGCTGCCTCGTATACGACGCAAGTATCGGGACTCTATCAAGATA TACGAGTTCATCCAGTACCCTGGTGACACCGTTTTCGTGCCTGGTGGCTG GTGGCACGCGGTACTCAATCTTGAGGACAGTGTGGCAATCACCCAGAATT TCTGCAGCCGCAATAACTTCGAAAAGGTGAGCGCGCGTGCGGCCGAGTGA AGTCGTGGGCGATGTGCCAGGAGTATAATAAATGGGTGTGATGGCACACG CCTCTTAACATGCAGGTAGCAACAAGCAACGTCTCCAGCACGCATTTTGG CTGACGCCCGCGAGAGCTCAGTCTGCGTCTTTGTTCCGGTCTGACTTTTG ACATCGCGGGCAGGTATGGCGGAAAACACGGACTGGCCGAAAAAAGATGT CCGTCAAGTGGTTGAGAGAGCTGGACAAGGAGTACCCGAGCCTTGCCGAG ACCGCTCGCCGCCTCAACGCCGAAGACGGTTTCGTGATGATGACCAAGGA TGGGAGCAGGCGGTCCAACACCGATCGAGATAGCGAAGGCGGGGAACAGG GCAACCGAAAGAAGAAGCACGGCAAGAGGAAGGGTGGAGGAAGTGAAGGC AGCGGCAGTAGCGGCGGTGGCGGCGGCGAAGATGAAGGAGAGTCGGGAAG CGGAAGCTCTTCCTTCAAACGAGGCCGAAAGTACGGTAGTGATGGCAGCC GGGACGGTTCCGTGTACAATGGTAGCACGGGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10164:3946..6830-

>mRNA_L-elsbetiae_contig10164.217.1 ID=mRNA_L-elsbetiae_contig10164.217.1|Name=mRNA_L-elsbetiae_contig10164.217.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1962bp|location=Sequence derived from alignment at L-elsbetiae_contig10164:3946..6830- (Laminarionema elsbetiae ELsaHSoW15)
AGGTTCGGCGACTGTAAGCTCAAGTGCGGAGAAGATGACGACGGCTATTC
TGTCAAGAGGTTCGGCGACTGTAAGCTCAAGTGCGGAGAAGATGACGACG
GCTATTCTGTCAAGGTAAAGCTGAAGTACTTCCTGCGCTACATGGAGTAC
CAGACGGACGACAGCCCGTTATACATATTCGACAGTCACTTCGATGATCA
CGAGGTGGCCAAGGGCCTGCTCGAAGGTTTCTCCGTTCCAAGATACTTCC
CAGACGACCTGTTTTCGTTGGTCGGAGAGAGACGCCGACCGCCCTACAGG
TAAAGCTGAAGTACTTCCTGCGCTACATGGAGTACCAGACGGACGACAGC
CCGTTATACATATTCGACAGTCACTTCGATGATCACGAGGTGGCCAAGGG
CCTGCTCGAAGGTTTCTCCGTTCCAAGATACTTCCCAGACGACCTGTTTT
CGTTGGTCGGAGAGAGACGCCGACCGCCCTACAGGTGGTTTTTGGTTGGT
CCAAAACGCTCCGGAACGTCCGTGCACATTGATCCGCTTGGCACGAGTGC
TTGGAACACCGTAGTGAGCGGGAGGAAGCTCTGGGTGCTCTTCCCGCCGC
ACGTGGACAAGAATGTGGCTAAGGGAAAGGACGTGATGAGGCAGGGTGAA
GACGACGAGCCGGTGGTTTTTGGTTGGTCCAAAACGCTCCGGAACGTCCG
TGCACATTGATCCGCTTGGCACGAGTGCTTGGAACACCGTAGTGAGCGGG
AGGAAGCTCTGGGTGCTCTTCCCGCCGCACGTGGACAAGAATGTGGCTAA
GGGAAAGGACGTGATGAGGCAGGGTGAAGACGACGAGCCGATCAACTACT
TCGTGGACCTGCTGCCTCGTATACGACGCAAGTATCGGGACTCTATCAAG
ATATACGAGTTCATCCAGTACCCTGGTGACACCGTTTTCGTGCCTGGTGG
CTGGTGGCACGCGGTACTCAATCTTGAGGACAGTGTGGCAATCACCCAGA
ATTTCTGCAGCCGCAATAACTTCGAAAAGATCAACTACTTCGTGGACCTG
CTGCCTCGTATACGACGCAAGTATCGGGACTCTATCAAGATATACGAGTT
CATCCAGTACCCTGGTGACACCGTTTTCGTGCCTGGTGGCTGGTGGCACG
CGGTACTCAATCTTGAGGACAGTGTGGCAATCACCCAGAATTTCTGCAGC
CGCAATAACTTCGAAAAGGTATGGCGGAAAACACGGACTGGCCGAAAAAA
GATGTCCGTCAAGTGGTTGAGAGAGCTGGACAAGGAGTACCCGAGCCTTG
CCGAGACCGCTCGCCGCCTCAACGCCGAAGACGGTTTCGTGATGATGACC
AAGGATGGGAGCAGGCGGTCCAACACCGATCGAGATAGCGAAGGCGGGGA
ACAGGGCAACCGAAAGAAGAAGCACGGCAAGAGGAAGGGTGGAGGAAGTG
AAGGCAGCGGCAGTAGCGGCGGTGGCGGCGGCGAAGATGAAGGAGAGTCG
GGAAGCGGAAGCTCTTCCTTCAAACGAGGCCGAAAGTACGGTAGTGATGG
CAGCCGGGACGGTTCCGTGTACAATGGTAGCACGGGGTGAGTATGGCGGA
AAACACGGACTGGCCGAAAAAAGATGTCCGTCAAGTGGTTGAGAGAGCTG
GACAAGGAGTACCCGAGCCTTGCCGAGACCGCTCGCCGCCTCAACGCCGA
AGACGGTTTCGTGATGATGACCAAGGATGGGAGCAGGCGGTCCAACACCG
ATCGAGATAGCGAAGGCGGGGAACAGGGCAACCGAAAGAAGAAGCACGGC
AAGAGGAAGGGTGGAGGAAGTGAAGGCAGCGGCAGTAGCGGCGGTGGCGG
CGGCGAAGATGAAGGAGAGTCGGGAAGCGGAAGCTCTTCCTTCAAACGAG
GCCGAAAGTACGGTAGTGATGGCAGCCGGGACGGTTCCGTGTACAATGGT
AGCACGGGGTGA
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