mRNA_L-elsbetiae_contig10164.216.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10164.216.1
Unique NamemRNA_L-elsbetiae_contig10164.216.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10164.216.1 vs. uniprot
Match: D7G462_ECTSI (Nicolin 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G462_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 3.860e-72
Identity = 114/162 (70.37%), Postives = 128/162 (79.01%), Query Frame = 1
Query:  202 RKRIQRLDAIVFRNFYCSHITIKRRRQHFDPVPTATSTAAAGGVDGDPWVTILRDRPLMENPHHEDDAQYWHVVTADEFDREEYDAESTAPLRIYLYQPSPMWKAIELHHVKVISWSSAGSNGAKEDDNSLRSSGQRETDGHLEDLCRGISEQVEIFGDKRR 687
            RK  +RLDAIVF+NFYCSHITIK+RRQ FD     T+TAA  G DGDPW+TILRDRPLME+PHHEDDAQYWHVV ++EFD EEYDAESTAP+RIYLYQ SPMWK   LHHVK + WS AGS+    DD       +RE DG+L DLCRGISEQV+IFGDK R
Sbjct:   48 RKPARRLDAIVFKNFYCSHITIKQRRQRFD-----TATAADCGKDGDPWLTILRDRPLMEDPHHEDDAQYWHVVRSEEFDPEEYDAESTAPIRIYLYQSSPMWKTFGLHHVKAVGWSRAGSSNGGRDD-------EREADGNLGDLCRGISEQVKIFGDKHR 197          
BLAST of mRNA_L-elsbetiae_contig10164.216.1 vs. uniprot
Match: A0A0H5QY21_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QY21_9EUKA)

HSP 1 Score: 83.2 bits (204), Expect = 1.950e-15
Identity = 47/103 (45.63%), Postives = 57/103 (55.34%), Query Frame = 1
Query:  220 LDAIVFRNFYCSHITIKRRRQHFDPVPTATSTAAAGGVDGDP-WVTILRDRPLMENPHHEDDAQYWHVVTADEFDREEYDAESTAPLRIYLYQPSPMWKAIEL 525
            +D IVFRNFYC  +TI             T + A G  DG P W TILR   LM +PH+EDDAQY H +++DEF+           LR YL QPSP WK+  L
Sbjct:   41 IDHIVFRNFYCFALTI-------------TQSTANGSSDGAPYWTTILRSYKLMTDPHYEDDAQYSHRISSDEFEEPFSREVPVYALRFYLEQPSPNWKSFGL 130          
BLAST of mRNA_L-elsbetiae_contig10164.216.1 vs. uniprot
Match: A0A6G0XAT5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XAT5_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 4.990e-8
Identity = 40/113 (35.40%), Postives = 54/113 (47.79%), Query Frame = 1
Query:  220 LDAIVFRNFYCSHITIKRRRQHFDPVPTATSTAAAGGVDGDPWVTILRDRPLMENPHHEDDAQYWHVVTADEFDREEYDAESTAPLRIYLYQPSPMWKAIELHHVKVISWSSA 558
            L  I F+N+Y + + I       D V    S              IL  R LM++ HHEDDAQ WH++  +E     +D+ S   L  YL QPSP+W+  EL  +KV   S A
Sbjct:   47 LSHITFQNYYVASLRI-------DQVINGRSDV------------ILEKRSLMDDAHHEDDAQNWHIIKREELGSH-FDSTSVEKLIFYLTQPSPLWEKWELRTLKVFETSEA 139          
BLAST of mRNA_L-elsbetiae_contig10164.216.1 vs. uniprot
Match: W4GYG4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GYG4_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 6.150e-7
Identity = 37/99 (37.37%), Postives = 46/99 (46.46%), Query Frame = 1
Query:  250 CSHITIKRRRQHFDPVPTATSTAAAGGVDG---DPWVTILRDRPLMENPHHEDDAQYWHVVTADEFDREEYDAESTAPLRIYLYQPSPMWKAIELHHVK 537
            C  +T K    +F  V      AA   +D       VTIL   PLM++ HHE DAQ WH++  DEF     D         YL QPSP+W   EL  +K
Sbjct:   40 CIEVTFKAPPANFSHVTFQNYYAATLRIDQVVQGKCVTILNRFPLMQDAHHEGDAQNWHIIKRDEFGAM-LDVARAERFIFYLLQPSPLWDKWELRSIK 137          
BLAST of mRNA_L-elsbetiae_contig10164.216.1 vs. uniprot
Match: A0A024UMP9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UMP9_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.630e-6
Identity = 29/64 (45.31%), Postives = 37/64 (57.81%), Query Frame = 1
Query:  349 VTILRDRPLMENPHHEDDAQYWHVVTADEFDREEYDAESTAPLRIYLYQPSPMWKAIELHHVKV 540
            VTIL    LM+N HHEDDAQ WH++  +EF     D         YL QPSP+W+  EL  +K+
Sbjct:   76 VTILDRFRLMQNAHHEDDAQNWHIIKREEFGAP-LDVAKAEHFIFYLLQPSPLWEKWELRSIKL 138          
BLAST of mRNA_L-elsbetiae_contig10164.216.1 vs. uniprot
Match: A0A6A5AC89_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AC89_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.940e-6
Identity = 28/63 (44.44%), Postives = 35/63 (55.56%), Query Frame = 1
Query:  349 VTILRDRPLMENPHHEDDAQYWHVVTADEFDREEYDAESTAPLRIYLYQPSPMWKAIELHHVK 537
            +TIL   PLM++ HHE DAQ WH++  DEF     D         YL QPSP+W   EL  +K
Sbjct:    1 MTILNRFPLMQDAHHEGDAQNWHIIKRDEFGAM-LDVAGAERFIFYLLQPSPLWDKWELRSIK 62          
BLAST of mRNA_L-elsbetiae_contig10164.216.1 vs. uniprot
Match: A0A665TWE0_ECHNA (Nicolin 1 n=3 Tax=Carangiformes TaxID=1489907 RepID=A0A665TWE0_ECHNA)

HSP 1 Score: 56.2 bits (134), Expect = 1.150e-5
Identity = 30/107 (28.04%), Postives = 56/107 (52.34%), Query Frame = 1
Query:  220 LDAIVFRNFYCSHITIKRRRQHFDPVPTATSTAAAGGVDGDPWVTILRDRPLMENPHHEDDAQYWHVVTADEFDREEYDAESTAPLRIYLYQPSPMWKAIELHHVKV 540
            ++ I F+N+Y +++T++  R+     P   + A         W T+LRD PLM+NPH E  +Q ++ +   +    + + +  A +R+ L QPS  W    L ++K+
Sbjct:   50 IEEITFKNYYTAYVTVRLLRRS----PGQDAPAK--------WCTVLRDLPLMDNPHTEGGSQDYYSIHRAQM---QVEPDHVASVRLILRQPSSAWLNFSLENIKI 141          
BLAST of mRNA_L-elsbetiae_contig10164.216.1 vs. uniprot
Match: A0A3Q1JBV0_ANATE (Nicolin 1 n=1 Tax=Anabas testudineus TaxID=64144 RepID=A0A3Q1JBV0_ANATE)

HSP 1 Score: 55.1 bits (131), Expect = 2.750e-5
Identity = 29/107 (27.10%), Postives = 55/107 (51.40%), Query Frame = 1
Query:  220 LDAIVFRNFYCSHITIKRRRQHFDPVPTATSTAAAGGVDGDPWVTILRDRPLMENPHHEDDAQYWHVVTADEFDREEYDAESTAPLRIYLYQPSPMWKAIELHHVKV 540
            ++ I F+N+Y +++T++  R+    +P   + A         W T+LRD PLM+NPH E  +Q ++ +   +    + + +    +R+ L QPS  W    L  +K+
Sbjct:   47 IEEITFKNYYTAYVTVRLLRR----LPGQDAPAK--------WCTVLRDLPLMDNPHTEQGSQDYYSLHRTQM---QVEPDHVVSVRLILRQPSSAWLTFSLEEIKM 138          
BLAST of mRNA_L-elsbetiae_contig10164.216.1 vs. uniprot
Match: A0A6A5BXG1_NAEFO (Uncharacterized protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5BXG1_NAEFO)

HSP 1 Score: 53.1 bits (126), Expect = 6.720e-5
Identity = 34/97 (35.05%), Postives = 49/97 (50.52%), Query Frame = 1
Query:  229 IVFRNFYCSHITIKRRRQHFDPVPTATSTAAAGGVDGDPWVTILRDRPLMENPHHEDDAQ-YWHVVTADEFDREEYDAESTAPLRIYLYQPSPMWKA 516
            I+FRN+YCSHITIK + Q+              G     ++T+L    LMEN ++E+D+Q Y  +    +F+           LR Y YQ SP WK+
Sbjct:   40 IIFRNYYCSHITIKYKAQN--------------GT----FITLLSKYQLMENANYENDSQNYVRINCGKDFNSNYKKDMQFNNLRFYYYQTSPNWKS 118          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10164.216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G462_ECTSI3.860e-7270.37Nicolin 1 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A0H5QY21_9EUKA1.950e-1545.63Uncharacterized protein (Fragment) n=1 Tax=Spongos... [more]
A0A6G0XAT5_9STRA4.990e-835.40Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
W4GYG4_9STRA6.150e-737.37Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A024UMP9_9STRA1.630e-645.31Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6A5AC89_9STRA1.940e-644.44Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A665TWE0_ECHNA1.150e-528.04Nicolin 1 n=3 Tax=Carangiformes TaxID=1489907 RepI... [more]
A0A3Q1JBV0_ANATE2.750e-527.10Nicolin 1 n=1 Tax=Anabas testudineus TaxID=64144 R... [more]
A0A6A5BXG1_NAEFO6.720e-535.05Uncharacterized protein n=2 Tax=Naegleria TaxID=57... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10164contigL-elsbetiae_contig10164:2335..3399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.3
Seed ortholog evalue6.6e-35
Seed eggNOG ortholog2880.D7G462
Hectar predicted targeting categoryother localisation
EggNOG OGs2EA9C@1,2SGHZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionnicolin 1
Ec32 orthologEc-02_001420.1
Exons2
Model size955
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10164.216.1prot_L-elsbetiae_contig10164.216.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10164 2710..3149 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815247.6302738-UTR-L-elsbetiae_contig10164:2334..27091622815247.6302738-UTR-L-elsbetiae_contig10164:2334..2709Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10164 2335..2709 +
1691682794.3337247-UTR-L-elsbetiae_contig10164:2334..27091691682794.3337247-UTR-L-elsbetiae_contig10164:2334..2709Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10164 2335..2709 +
1622815247.6706882-UTR-L-elsbetiae_contig10164:3149..33991622815247.6706882-UTR-L-elsbetiae_contig10164:3149..3399Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10164 3150..3399 +
1691682794.364234-UTR-L-elsbetiae_contig10164:3149..33991691682794.364234-UTR-L-elsbetiae_contig10164:3149..3399Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10164 3150..3399 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815247.6418653-CDS-L-elsbetiae_contig10164:2709..28131622815247.6418653-CDS-L-elsbetiae_contig10164:2709..2813Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10164 2710..2813 +
1691682794.3455987-CDS-L-elsbetiae_contig10164:2709..28131691682794.3455987-CDS-L-elsbetiae_contig10164:2709..2813Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10164 2710..2813 +
1622815247.6546276-CDS-L-elsbetiae_contig10164:2923..31491622815247.6546276-CDS-L-elsbetiae_contig10164:2923..3149Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10164 2924..3149 +
1691682794.3556464-CDS-L-elsbetiae_contig10164:2923..31491691682794.3556464-CDS-L-elsbetiae_contig10164:2923..3149Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10164 2924..3149 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10164.216.1

>prot_L-elsbetiae_contig10164.216.1 ID=prot_L-elsbetiae_contig10164.216.1|Name=mRNA_L-elsbetiae_contig10164.216.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
MENPHHEDDAQYWHVVTADEFDREEYDAESTAPLRIYLYQPSPMWKAIEL
HHVKVISWSSAGSNGAKEDDNSLRSSGQRETDGHLEDLCRGISEQVEIFG
DKRRLRQTS*
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mRNA from alignment at L-elsbetiae_contig10164:2335..3399+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10164.216.1 ID=mRNA_L-elsbetiae_contig10164.216.1|Name=mRNA_L-elsbetiae_contig10164.216.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1065bp|location=Sequence derived from alignment at L-elsbetiae_contig10164:2335..3399+ (Laminarionema elsbetiae ELsaHSoW15)
CCCAGAATTCCGGACAGAGAACCAAATACAGCAACCACAGAATGACAAAA AACGGCGGAGATATTTTTTGTAAACTGAAATAAGTCTGTCTATATAGTTG TTGCTCTTGAGGAGCTCCAACCACCATGCGGTATACTGATCACTAAACGG TCATGCATGTACCGTCTGTAAACCAATGTGAACATATTTTTTTTGTACCA GCGAAAACGTATTCAGAGGCTGGACGCGATTGTCTTCCGGAACTTCTACT GCTCGCACATCACAATCAAGCGGCGCCGGCAACACTTCGACCCAGTACCG ACGGCAACTTCAACGGCAGCAGCTGGCGGAGTAGACGGAGATCCATGGGT GACAATTTTGCGAGACAGGCCTTTGATGGAAAACCCACACCACGAGGATG ATGCACAATACTGGCATGTGGTGACAGCGGACGAGTTCGATCGCGAGGAG TACGACGCGGAATCGACTGCTCCTCTCAGGTCAGCCAGCCGTATATCGTG CTTGCACCGTCTACTCCAGATGTTTGGCAGACCACAGCGCCCACCACCCT GGACTTTCTTCGTGTTCTCTGCCGTGCTTTCACTGGCAGGATCTATCTTT ATCAACCTTCCCCGATGTGGAAGGCCATTGAGTTGCATCACGTGAAAGTT ATAAGTTGGTCAAGTGCTGGTTCAAACGGCGCCAAGGAAGATGACAATTC ACTCCGCAGCAGTGGCCAAAGAGAGACGGACGGCCACCTCGAAGACCTGT GCAGGGGCATCAGCGAGCAAGTAGAGATCTTCGGCGACAAAAGAAGACTC AGGCAAACGTCTTGAAGGCTCGTGTGGAGATTTGTTCTTTGCATAGAAGT ACATATTCTCCAACCGCTTCGTTATCAATCCCTTCGTTTTGCGTGGGGGT GGTTAGATGTACTCGGTGATAAAATAGGTACGTATGTACCTCGTACTACA TACAAGTCTGAGGATGACGGGTTCTATGTGTCCATGGCTATCTTGTCATG CATTTCCCGGCGGTTTTTGCAATCAATCGAGCATGCACGCGTGAAGTTCA AACAATCTTCCAAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10164:2335..3399+

>mRNA_L-elsbetiae_contig10164.216.1 ID=mRNA_L-elsbetiae_contig10164.216.1|Name=mRNA_L-elsbetiae_contig10164.216.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig10164:2335..3399+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAAACCCACACCACGAGGATGATGCACAATACTGGCATGTGGTGAC
AGCGGACGAGTTCGATCGCGAGGAGTACGACGCGGAATCGACTGCTCCTC
TCAGATGGAAAACCCACACCACGAGGATGATGCACAATACTGGCATGTGG
TGACAGCGGACGAGTTCGATCGCGAGGAGTACGACGCGGAATCGACTGCT
CCTCTCAGGATCTATCTTTATCAACCTTCCCCGATGTGGAAGGCCATTGA
GTTGCATCACGTGAAAGTTATAAGTTGGTCAAGTGCTGGTTCAAACGGCG
CCAAGGAAGATGACAATTCACTCCGCAGCAGTGGCCAAAGAGAGACGGAC
GGCCACCTCGAAGACCTGTGCAGGGGCATCAGCGAGCAAGTAGAGATCTT
CGGCGACAAAAGAAGACTCAGGCAAACGTCTTGAGATCTATCTTTATCAA
CCTTCCCCGATGTGGAAGGCCATTGAGTTGCATCACGTGAAAGTTATAAG
TTGGTCAAGTGCTGGTTCAAACGGCGCCAAGGAAGATGACAATTCACTCC
GCAGCAGTGGCCAAAGAGAGACGGACGGCCACCTCGAAGACCTGTGCAGG
GGCATCAGCGAGCAAGTAGAGATCTTCGGCGACAAAAGAAGACTCAGGCA
AACGTCTTGA
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