mRNA_L-elsbetiae_contig10163.214.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10163.214.1
Unique NamemRNA_L-elsbetiae_contig10163.214.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10163.214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10163contigL-elsbetiae_contig10163:1592..2131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size542
Cds size528
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815247.5310524-UTR-L-elsbetiae_contig10163:1591..16031622815247.5310524-UTR-L-elsbetiae_contig10163:1591..1603Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10163 1592..1603 +
1691682794.2827096-UTR-L-elsbetiae_contig10163:1591..16031691682794.2827096-UTR-L-elsbetiae_contig10163:1591..1603Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10163 1592..1603 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815247.541366-CDS-L-elsbetiae_contig10163:1603..21311622815247.541366-CDS-L-elsbetiae_contig10163:1603..2131Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10163 1604..2131 +
1691682794.2916987-CDS-L-elsbetiae_contig10163:1603..21311691682794.2916987-CDS-L-elsbetiae_contig10163:1603..2131Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10163 1604..2131 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10163.214.1prot_L-elsbetiae_contig10163.214.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10163 1604..2131 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10163.214.1

>prot_L-elsbetiae_contig10163.214.1 ID=prot_L-elsbetiae_contig10163.214.1|Name=mRNA_L-elsbetiae_contig10163.214.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=176bp
MPSEVLALAAPEGRQTSLTCTVSRSSAIAAPAALNGTAAATATSEAITTA
PLHGFNAGLSTSALSSLERAQRATCLLTLKRQEALERCPKGGGARTWGNI
VDASLRAFKDKRREAVVKRSEAELSLTVAEIMAASNNSPHTQHDVLPLAT
ALVSGDAEGGRQLGEGGNDGQEPAVA
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mRNA from alignment at L-elsbetiae_contig10163:1592..2131+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10163.214.1 ID=mRNA_L-elsbetiae_contig10163.214.1|Name=mRNA_L-elsbetiae_contig10163.214.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=540bp|location=Sequence derived from alignment at L-elsbetiae_contig10163:1592..2131+ (Laminarionema elsbetiae ELsaHSoW15)
AGAGTCGGAGTCATGCCGTCAGAAGTGTTAGCACTGGCGGCGCCAGAAGG
ACGGCAAACATCTCTCACATGCACGGTGTCGAGGTCATCAGCCATAGCAG
CTCCGGCAGCGCTCAATGGAACCGCCGCCGCCACTGCAACATCGGAAGCA
ATCACCACCGCACCACTGCACGGCTTCAACGCCGGGCTGTCCACCTCGGC
CCTCAGTAGCCTTGAACGGGCACAGCGGGCGACCTGCCTGCTTACCCTAA
AGCGGCAGGAAGCGTTAGAGAGGTGTCCCAAAGGCGGTGGTGCTCGTACC
TGGGGGAACATTGTCGACGCGTCCTTGCGCGCGTTCAAGGACAAAAGGAG
GGAGGCAGTAGTAAAGCGTTCGGAAGCCGAGCTCTCATTGACAGTAGCTG
AGATTATGGCGGCCAGTAACAACAGCCCTCACACCCAGCACGATGTTCTG
CCATTGGCGACGGCGTTAGTGAGTGGGGACGCGGAGGGTGGAAGGCAGCT
TGGAGAAGGGGGTAACGACGGGCAAGAGCCGGCAGTGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10163:1592..2131+

>mRNA_L-elsbetiae_contig10163.214.1 ID=mRNA_L-elsbetiae_contig10163.214.1|Name=mRNA_L-elsbetiae_contig10163.214.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1056bp|location=Sequence derived from alignment at L-elsbetiae_contig10163:1592..2131+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGTCAGAAGTGTTAGCACTGGCGGCGCCAGAAGGACGGCAAACATC
TCTCACATGCACGGTGTCGAGGTCATCAGCCATAGCAGCTCCGGCAGCGC
TCAATGGAACCGCCGCCGCCACTGCAACATCGGAAGCAATCACCACCGCA
CCACTGCACGGCTTCAACGCCGGGCTGTCCACCTCGGCCCTCAGTAGCCT
TGAACGGGCACAGCGGGCGACCTGCCTGCTTACCCTAAAGCGGCAGGAAG
CGTTAGAGAGGTGTCCCAAAGGCGGTGGTGCTCGTACCTGGGGGAACATT
GTCGACGCGTCCTTGCGCGCGTTCAAGGACAAAAGGAGGGAGGCAGTAGT
AAAGCGTTCGGAAGCCGAGCTCTCATTGACAGTAGCTGAGATTATGGCGG
CCAGTAACAACAGCCCTCACACCCAGCACGATGTTCTGCCATTGGCGACG
GCGTTAGTGAGTGGGGACGCGGAGGGTGGAAGGCAGCTTGGAGAAGGGGG
TAACGACGGGCAAGAGCCGGCAGTGGCGATGCCGTCAGAAGTGTTAGCAC
TGGCGGCGCCAGAAGGACGGCAAACATCTCTCACATGCACGGTGTCGAGG
TCATCAGCCATAGCAGCTCCGGCAGCGCTCAATGGAACCGCCGCCGCCAC
TGCAACATCGGAAGCAATCACCACCGCACCACTGCACGGCTTCAACGCCG
GGCTGTCCACCTCGGCCCTCAGTAGCCTTGAACGGGCACAGCGGGCGACC
TGCCTGCTTACCCTAAAGCGGCAGGAAGCGTTAGAGAGGTGTCCCAAAGG
CGGTGGTGCTCGTACCTGGGGGAACATTGTCGACGCGTCCTTGCGCGCGT
TCAAGGACAAAAGGAGGGAGGCAGTAGTAAAGCGTTCGGAAGCCGAGCTC
TCATTGACAGTAGCTGAGATTATGGCGGCCAGTAACAACAGCCCTCACAC
CCAGCACGATGTTCTGCCATTGGCGACGGCGTTAGTGAGTGGGGACGCGG
AGGGTGGAAGGCAGCTTGGAGAAGGGGGTAACGACGGGCAAGAGCCGGCA
GTGGCG
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