mRNA_L-elsbetiae_contig10161.213.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10161.213.1
Unique NamemRNA_L-elsbetiae_contig10161.213.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10161.213.1 vs. uniprot
Match: D7FNG6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNG6_ECTSI)

HSP 1 Score: 403 bits (1035), Expect = 1.210e-134
Identity = 212/277 (76.53%), Postives = 228/277 (82.31%), Query Frame = 1
Query:    1 RYIEYEGNMVIPLLSTSVLLSCSRNLPAGSMMGTLMASDPRECNALAEAYTCCLSADGLSLGGKNLPTLERMLCPPNGEADADLMTLDAALIGAGTSERANWGGDEGVLRTLRLCILDLLLENVEQRGPNLAHLLLGLLGPSTSAA--------AAAAPRASVCLEAVVGLLNSPMMMEQEPRLAEKCSHLLYKLCSCKDTRVSVLNRLRNSSGGRSKEAFFPQAIRLALGGRRLEPASSSAAALAGRGAKPDVSFERHCLAWLLKAAAIDLRTSCE 807
            RYIEY+GNMVIPLLSTSVLLSC RNLPAG+MM TLMASDPRECNALAEAYTCCL+ADGL LGG NLP+LE MLCPPNGEAD D MTLDAALIGAGT  R NWGGDEG LRT+RLCILDLLLENVEQRGPNLAHLLLGL+GPS + A        AAA PRASVCLEAVV LL SP+++EQEPRLAEKCSHLLYKLCS KDTRVS LNRLR+ SGG S  AFFPQA+R+AL       +  S   +    AK + SF RHCLAWLLKAAAIDLRTSCE
Sbjct:  352 RYIEYDGNMVIPLLSTSVLLSCGRNLPAGNMMATLMASDPRECNALAEAYTCCLAADGLGLGGNNLPSLEGMLCPPNGEADGDFMTLDAALIGAGTGGR-NWGGDEGALRTVRLCILDLLLENVEQRGPNLAHLLLGLVGPSATTAVAGRGRGAAAALPRASVCLEAVVSLLQSPVVVEQEPRLAEKCSHLLYKLCSSKDTRVSALNRLRHPSGGSSNAAFFPQALRVALA-----DSGRSMMMMPPPEAKAEASFGRHCLAWLLKAAAIDLRTSCE 622          
BLAST of mRNA_L-elsbetiae_contig10161.213.1 vs. uniprot
Match: A0A6H5L6F6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6F6_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 1.180e-53
Identity = 92/109 (84.40%), Postives = 97/109 (88.99%), Query Frame = 1
Query:    1 RYIEYEGNMVIPLLSTSVLLSCSRNLPAGSMMGTLMASDPRECNALAEAYTCCLSADGLSLGGKNLPTLERMLCPPNGEADADLMTLDAALIGAGTSERANWGGDEGVL 327
            RYIEY+GNMVIPLLSTSVLLSC RNLPAG+MM TLMASDPRECNALAEAYT CL+ADGLSLGG NLP+LE MLCPPN EAD D MTLD ALIGAGT ER NWGGDEG +
Sbjct:  348 RYIEYDGNMVIPLLSTSVLLSCGRNLPAGNMMATLMASDPRECNALAEAYTYCLAADGLSLGGNNLPSLEEMLCPPNREADGDFMTLDTALIGAGTGER-NWGGDEGAV 455          
BLAST of mRNA_L-elsbetiae_contig10161.213.1 vs. uniprot
Match: A0A484ED66_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484ED66_BRELC)

HSP 1 Score: 59.3 bits (142), Expect = 2.880e-6
Identity = 34/79 (43.04%), Postives = 50/79 (63.29%), Query Frame = 1
Query:  331 TLRLCILDLLLENVEQRGPNLAHLLLGLLGPSTSAAAAAAPRA--SVCLEAVVGLLNSPMMMEQEPRLAEKCSHLLYKL 561
            ++R+ ILDLLLEN+++  PN+AHLLLG    S     AA P +     L AV+ L+++     ++P LAE+C H+LY L
Sbjct: 1086 SIRVAILDLLLENLDKPAPNVAHLLLGYASHSGDLEMAAVPASYMKTGLAAVITLVSNADFGLEKPELAERCYHVLYSL 1164          
BLAST of mRNA_L-elsbetiae_contig10161.213.1 vs. uniprot
Match: UPI00097D906B (nuclear pore complex protein Nup205 n=3 Tax=Percomorphaceae TaxID=1489872 RepID=UPI00097D906B)

HSP 1 Score: 54.7 bits (130), Expect = 9.480e-5
Identity = 51/166 (30.72%), Postives = 81/166 (48.80%), Query Frame = 1
Query:  346 ILDLLLENVEQRGPNLAHLLLG--LLGPSTSA-----AAAAAPRASVCLEAVVGLL-------NSPMMMEQEPRLAEKCSHLLYKLCSCKDTRVSVLNRLRNSSGGRSKEAFFPQAIRLALGGRRLEPASSSAAALAGRGAKPDVSFERHCLAWLLKAAAIDLRTS 801
            IL+LL+ ++E + PNLA  LLG  +  P +S           PR+  CL A++ LL       + P++ +Q P LAE C  ++Y+LC+C DT    +  LR S     ++  F     +      + P S+  AAL+              ++WL+K AAI+LR +
Sbjct:  987 ILNLLINSLELKTPNLALYLLGYEVKKPVSSTNLQDPGVLGCPRS--CLHAILSLLQRGTEKRSGPVITQQAPHLAELCYQVIYQLCACPDTSGPTMRYLRTS-----QDFLFSHLQHMPF----ILP-SNQIAALSQ-------------MSWLMKTAAIELRVT 1127          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10161.213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FNG6_ECTSI1.210e-13476.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6F6_9PHAE1.180e-5384.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A484ED66_BRELC2.880e-643.04Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
UPI00097D906B9.480e-530.72nuclear pore complex protein Nup205 n=3 Tax=Percom... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10161contigL-elsbetiae_contig10161:1353..6977 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score382.1
Seed ortholog evalue2.1e-103
Seed eggNOG ortholog2880.D7FNG6
Preferred nameNUP205
KEGG koko:K14310
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0000132,GO:0000226,GO:0000278,GO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0006997,GO:0006999,GO:0007010,GO:0007017,GO:0007049,GO:0007088,GO:0007163,GO:0007275,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009605,GO:0009628,GO:0009629,GO:0009790,GO:0009792,GO:0009794,GO:0009987,GO:0010389,GO:0010467,GO:0010564,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016032,GO:0016043,GO:0017038,GO:0017056,GO:0022402,GO:0022607,GO:0030010,GO:0031090,GO:0031224,GO:0031503,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032386,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0034622,GO:0040001,GO:0040011,GO:0042330,GO:0042332,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044611,GO:0045184,GO:0045995,GO:0046822,GO:0046907,GO:0046931,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051028,GO:0051049,GO:0051128,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051236,GO:0051239,GO:0051292,GO:0051293,GO:0051294,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0051704,GO:0051726,GO:0051783,GO:0051983,GO:0060341,GO:0060623,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:1901987,GO:1901990,GO:1902749,GO:1902850,GO:1903047,GO:1903379,GO:2000026
EggNOG free text desc.nuclear pore organization
EggNOG OGsKOG1835@1,KOG1835@2759
Ec32 ortholog descriptionNucleoporin Nup186/Nup192/Nup205
Ec32 orthologEc-01_005530.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Exons5
Model size807
Cds size783
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10161.213.1prot_L-elsbetiae_contig10161.213.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10161 1353..6953 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815247.4395711-CDS-L-elsbetiae_contig10161:1352..15111622815247.4395711-CDS-L-elsbetiae_contig10161:1352..1511Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10161 1353..1511 -
1691682794.2211769-CDS-L-elsbetiae_contig10161:1352..15111691682794.2211769-CDS-L-elsbetiae_contig10161:1352..1511Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10161 1353..1511 -
1622815247.4533813-CDS-L-elsbetiae_contig10161:2064..21731622815247.4533813-CDS-L-elsbetiae_contig10161:2064..2173Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10161 2065..2173 -
1691682794.232092-CDS-L-elsbetiae_contig10161:2064..21731691682794.232092-CDS-L-elsbetiae_contig10161:2064..2173Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10161 2065..2173 -
1622815247.46624-CDS-L-elsbetiae_contig10161:3475..36901622815247.46624-CDS-L-elsbetiae_contig10161:3475..3690Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10161 3476..3690 -
1691682794.2400787-CDS-L-elsbetiae_contig10161:3475..36901691682794.2400787-CDS-L-elsbetiae_contig10161:3475..3690Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10161 3476..3690 -
1622815247.4796937-CDS-L-elsbetiae_contig10161:4539..47481622815247.4796937-CDS-L-elsbetiae_contig10161:4539..4748Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10161 4540..4748 -
1691682794.2482789-CDS-L-elsbetiae_contig10161:4539..47481691682794.2482789-CDS-L-elsbetiae_contig10161:4539..4748Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10161 4540..4748 -
1622815247.4891937-CDS-L-elsbetiae_contig10161:6862..69531622815247.4891937-CDS-L-elsbetiae_contig10161:6862..6953Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10161 6863..6953 -
1691682794.2585127-CDS-L-elsbetiae_contig10161:6862..69531691682794.2585127-CDS-L-elsbetiae_contig10161:6862..6953Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10161 6863..6953 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815247.5017626-UTR-L-elsbetiae_contig10161:6953..69771622815247.5017626-UTR-L-elsbetiae_contig10161:6953..6977Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10161 6954..6977 -
1691682794.2718346-UTR-L-elsbetiae_contig10161:6953..69771691682794.2718346-UTR-L-elsbetiae_contig10161:6953..6977Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10161 6954..6977 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10161.213.1

>prot_L-elsbetiae_contig10161.213.1 ID=prot_L-elsbetiae_contig10161.213.1|Name=mRNA_L-elsbetiae_contig10161.213.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=261bp
MVIPLLSTSVLLSCSRNLPAGSMMGTLMASDPRECNALAEAYTCCLSADG
LSLGGKNLPTLERMLCPPNGEADADLMTLDAALIGAGTSERANWGGDEGV
LRTLRLCILDLLLENVEQRGPNLAHLLLGLLGPSTSAAAAAAPRASVCLE
AVVGLLNSPMMMEQEPRLAEKCSHLLYKLCSCKDTRVSVLNRLRNSSGGR
SKEAFFPQAIRLALGGRRLEPASSSAAALAGRGAKPDVSFERHCLAWLLK
AAAIDLRTSCE
back to top

mRNA from alignment at L-elsbetiae_contig10161:1353..6977-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10161.213.1 ID=mRNA_L-elsbetiae_contig10161.213.1|Name=mRNA_L-elsbetiae_contig10161.213.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5625bp|location=Sequence derived from alignment at L-elsbetiae_contig10161:1353..6977- (Laminarionema elsbetiae ELsaHSoW15)
AGGTACATCGAGTACGAGGGAAACATGGTGATTCCGCTGCTCTCAACCTC CGTGCTGCTGTCCTGTAGCCGGAATCTTCCCGCCGGGAGCATGATGGGGA CTCTCATGGCCTCGGGTGAGATGTATATACATATGTATATTATATATATA CATATTTTTTTTTTTCCGTTATTTGATGTGTTCGTTGTTTTTCTATTTTG TTCTTCCCATTATTGGCTTATTCGTCGTCTGCCCCCACTGGCCCCCTTCC TCCACTACGGCTCTGTAGGCTTGAGACACACAGGTTGTCGTCATGCAAGG AAGGCGTGTTTGCCTCTGAGGTTGGTGGTGCAATGCGGTGTAGGTGGCAC TTGCTGTTGTTGCTGTTGTTGTTGTTATGGCTGTTTGCGGCGGCGTTTTC TTACGCCCTCCGCTTTCATTCGCGTCGCTATTTGTTTGGAAGAGCGGGGT TGCTGGTTTTGCTGGTGGCTCTGTTTTTTTTCGGCATGAGAGGAAGAGAA AGTTCCGAGGAATTTCTGGTGGCCATGCGCGACAATTCTCACGGCATGAA GAGGTCCCATCATTGGTGCTTTACCCCGCGGTAGGTATAGCATGGATACA TATAACCGTATACTATGCCATGACACGAGAAGGGGGAAACGATATATATA GATCAACTCCCTTATACTGAATAGCCTCGATACAAACGGTCACCACGTTG ATCTCTCTCTTCTCTCTTCGATGTGTGTGTTGCATGCGCCCCCCCCCTCC CCCCTCCGGCCTCGCCCTTTCGCTGTTTTGGTCGGTTGCACACGAGTCTC TCTTCTCTTTGAGGGTGGCAGCACTGACCGTAGCGCTAAATACGTGTGTA TGTTCGTTTTTTTTGGTGACAAACGGCCTAGTTTTCGTTTCGAGGTGGCG CTTTGTAATTTTATGCGAGAAATACTTATCCAAATCAGGTAGTAGTGTAC GGTAAGGACGTCACCGGGGCAAAGGCGTACAACCAGCCCCACGCTCGCCT TGCCTCATGCGCCGCCCCTCTCACAGCTACCGTAGGTGACATAAGATAAG ACACCCCCTGGACCGATATTGAAAGCTTGGTTACTCCGCAACGAATACGA TTCTAACGACAAACGCCACATTTTCGGACAGCCCTCGACGAGATCTTTCC AACGCCGCCCTTTTCGGGACCGACGCTCTGCTTGCTGTGGAGTACTTGAG CTTTGAAAATCGGTCCAGGGGGTGTCTTATCTTATGTTACCTACGGTATG TGTATTTGTGTGTGATGTTTATAAACCCCCCTCTCTCCTCTCTTCTCCCT CCCTACCTCGGTATCCATCGATGATCGCCGCGTCGAATCATGCTTCTAAA AGTACATATGTATGTGCAATAGTGAGTTGTTTTTATCGTCTCCGCTTTTT TAATTAATGTATACAAATGTCAGCAGTCTACGTCCGGTCTGCGAAAATAT CGTTTCAGAGGGATCTGTTGTAGGCATACCATGTAACATACTAACCCCCC CCCCCCCCCCCCCCCCCCTTTTTTTTTTTTTTCTCCTCCACAAACAATCA CTATAAAAAAATATACCATAAATAAAAAATAAAAACAAAAATAATAAAAA AAATTATTTTNNNNNNNNNNGTGCTCTTCCCATCTCTACGTCGGGTCTGC GAAAAAATCGTTTCCGGGGGGTTTGTTGTGGGCCTCCCAATTAAAAAACT ACCCCCCCCCCCCCCCCCCCTTTTTATTTTTTTATTCCCCGTCCCAAGAT ATACTTGCATAAAATCCGTAATCCATATAATATGAGCATCCATACATATA TATACAAGTTCGTTGGTGAAAATACTCTTTTTTGTGTTTTTTGTGCTAAT TTACATTGACGACATCCATGTTCACCTCCTTCTGTGTGACCCCGGTTGGT TCTAGTTGTACAGACAAATGCACTGCAAAAGTGTAGTACCTCTAAGTACA CCGCGAAGGTGTAGTACACGTCTCCACTTGGGGGGACTGTCGCCAAAATA AATGGGAAGAACACACACACACACACGCACACACACACACACACACATCC GCAGTCTACGCCCGACGTGTAAAAAAAGAAGCGTTCCCAGGGGGAAATGC TGTTGTAATCGACACACGAACCTTCCCCGGAAAATGGACAATCGAGAACC ACAAAGCACGACTCCGCCACGGTCGCCCCCGATTCAACTGATCTCAACCC CCCCCTACCCCTCACGTCTCTTGAAACAGACCCTCGCGAGTGCAACGCCC TCGCGGAGGCGTACACGTGCTGCCTCTCCGCCGACGGGCTGAGCCTCGGG GGCAAGAACCTGCCGACCCTGGAGAGGATGCTGTGCCCCCCCAACGGGGA GGCCGACGCGGACCTGATGACCCTCGACGCCGCCCTGATCGGCGCCGGGA CCAGCGAGAGGGCGAATTGGGGGGGCGACGAGGGGGTGGTGAGACACGGG GAGGGGAACGGAGGGGGTTCAGGGTGATCGTGGATCATGGAGGGGGGGGG CGGCTGTTTGGCTGTTCGCGGGGAGGGTGGGTGGGGTGCTACTACTGCTG TGTTTTTGTTGATGTTGTTGAACGGCTCTTTTTATTTTGTTTGACCGGAT GCTTGTTTTTTTTTTTTTTTTGTAGTGTTGCGGGTGGTGTAAGCTTTTTA TAATTAATTTGTAATTAATGTATACAAATGTCAGCAGTCTATGTCCAGTC TGTGAATATGTCCAGTCTGTGAATAAGTCGTTCCAGAGGGACTGTTGTAG GCGTACTGACCCCTTGTTTCCCCATCCCAGATACATTCGCACACGATCCG TAGTTCAATAAAAACCGGTAATAATTAATTATATATTGGAAACCGGTACT CTACATACATACATATAATGATCTCTCTGTATATTCAAAAGTACACAACA GTAGTGTAGTTCGTTGTTGTTCGTGTGTGATTTTGCTCTCTGCCTTGGCC TCTTCGGTGTTGTATTTAGCAAGTTGCTTTTTTAGTCATGTGGTCTCGCC ACTACATAGCATCACCACTGACGATTTAATGCCTTGTCGCGTTTTCGCGT ATTCGCCCCGTCCCTCTGTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCGCCGCG ACGGGGAGCCGGACGGGGCGNNNNNNNNNNCCCCCCACACCCCCCCCCCC GTCGATTTTTTGCCCTGCCGCGTTTTCCCCTCTTCCCCCCGCCCCCCCCC CCCCCCCCCCCCCCCCCCGGCCACGCGGACAACACAGCTGCGAACCCTCC GGCTGTGCATCCTGGACCTGCTGCTGGAAAACGTGGAACAGCGGGGCCCG AACCTGGCGCACCTGCTGCTCGGCCTCCTCGGCCCCTCCACCTCTGCTGC CGCCGCGGCGGCGCCGAGAGCGAGCGTTTGCCTGGAGGCCGTGGTCGGGC TGCTGAATAGCCCGATGATGATGGAGCAGGAGCCTCGCCTCGCCGAGAAG TGGTGCGTCCGTCCTGTGTGTACGTAACGCTATCGGTGCTTGCTTGCATA AATACATGGTGCCACCTACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCGCCGCCCCCCCCCTCCCCCCCCCCCCCCCGCCACCGG CGGGGGGGGGGTGGGNNNNNNNNNNGTGTTGCCGCCGTCCTGTGTTTGCG TACCCCTATCGGTGCTTGCTTTCAAAAATAATTTGCGCCACCTCCCCCCC CCCCCCCCCTGCGCCGCCGCCGCCGCGGCCCCGCCGATTCGATGTTCAGA GTTTGTGGTTGGCCCGCAAGACAGGGAGGGTGTGTGTGTGTGCGTGTGTG CCATGTTGAAGGCTGGGTCTTGGGTGGTTTCGCCGTCCGATATGGTGGCT TGCGGATCTGTCTGCCTGTCTCTCTTTTATCTCTCTTGACGAGACGTAAC CTTCACCGATATGTAGTCCATGTATTGGGGCCCCGCCCCCTCTCTTCCTC TTCTTGGCAGCGCCCCCCCCCCCCTCCCTCCCTCAGATGACCCTCCCTGT AGTGGAGTGGACGGAGCAAGCCGTCCCTGGAGATTGGGCGAGAGCGAGTG GGGTCCCCGGGGATCGTGCAACCTTCATGCATACCTATCGGCGGCGTTGA GACACGGCGGTGCTTCGTCGATCTGTCCTGTGTCGCGGACAGACACCTTT TGCCTTTTGCAGTATCACAGCATGTAGTGCGGACGCAGTCTTAGATGTAG ATGGACTGCTAGTATAATAGTGATGGAGGCGCCGTCGTTTGTCCCGCTAG GGTAACTCTCCCAAGACTGATATCTGTGCTGCCCTCACGTTGTGCCCGTT AGAGCCAAAGCCCGTGTTGCTAAAGTCTGATGCGCGGGGCCCCCTGTATA AGTACTGCCAGGTCAAGGTTGCTTGTTTTTGGGCATGGCTGTGCTTGGTG TTGTTTTGTACGTGTCTCTGTCTGCTCTTTGTCTGGTGTTAATGCACTCT ACTGCTGTGTGCGTCTTTTTTGCTTTCTTGGTTTCCCTTTTTGAGTTTTA ATCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTGTCT TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCCCCCCCCCCC CCCCCCCCCCCCTCCATTCATCCCTCTCTTGGCCGTCTACCCCCACCCGG TCTGACCGACACCTACACCGACATGGTGGTGGTCGACGGCGGCGGCGACA CCAGTTCTCACCTTCTCTACAAGCTCTGCTCCTGCAAGGACACGCGCGTT TCCGTGCTCAACAGGCTCAGGAACTCCTCGGGAGGGCGTTCCAAGGAGGC CTTCTTCCCGCAGGTCAGTGTGGTCTTGGGTGGAAGTGTAAATATGGTAC AAAACACATAAAAGTTCCACGGCTGGCCCTGGCATAAGTATGTTCCACGT GTTTCTGTTTTGTTTATTCACCCCCCGCGCTTCGCTGTCAGGATGGAAAG GAGGCGTCTACCTGTAACTTCTAACTATGTACTTCGTATGTATGTACTGG CCGTTTTTTGCTTGATTGTCATCTTTGCTCGACGTCACCAAGTAAAAACG TATATACGTACGTACGGGGCATTACGCCCTTGACCGCACGCACCCTACCT TTCCATACCCCCACCGCAACCCCCCGCTTGTAACGCACTTCGTCGACGTT CACATCGCCCGGCTGAACTCTCTCCTGAAAAAATGACGATTTTTTCGCAG ACCGGACCGCATATACTTCTAGACTGCTGACATATATCTGTGTGTTACAT ATATGTACATTAATAATAAAAAAATTACCATCACCGCCACTGCACTTCTA CCGCCGCCGCCTTTGGTGGCATTGCTTGTCCTTTTTCTTTTCGAACAACG CGGCGTGACATGGCAGGCCATACGACTCGCGCTCGGAGGGAGGCGGCTGG AACCGGCGTCGTCGTCGGCGGCGGCGTTGGCGGGGAGGGGTGCCAAGCCG GACGTGTCGTTCGAGCGGCACTGTCTTGCGTGGCTGCTCAAGGCCGCCGC GATTGACTTGAGGACGTCGTGCGAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig10161:1353..6977-

>mRNA_L-elsbetiae_contig10161.213.1 ID=mRNA_L-elsbetiae_contig10161.213.1|Name=mRNA_L-elsbetiae_contig10161.213.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1566bp|location=Sequence derived from alignment at L-elsbetiae_contig10161:1353..6977- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGATTCCGCTGCTCTCAACCTCCGTGCTGCTGTCCTGTAGCCGGAA
TCTTCCCGCCGGGAGCATGATGGGGACTCTCATGGCCTCGGATGGTGATT
CCGCTGCTCTCAACCTCCGTGCTGCTGTCCTGTAGCCGGAATCTTCCCGC
CGGGAGCATGATGGGGACTCTCATGGCCTCGGACCCTCGCGAGTGCAACG
CCCTCGCGGAGGCGTACACGTGCTGCCTCTCCGCCGACGGGCTGAGCCTC
GGGGGCAAGAACCTGCCGACCCTGGAGAGGATGCTGTGCCCCCCCAACGG
GGAGGCCGACGCGGACCTGATGACCCTCGACGCCGCCCTGATCGGCGCCG
GGACCAGCGAGAGGGCGAATTGGGGGGGCGACGAGGGGGTGACCCTCGCG
AGTGCAACGCCCTCGCGGAGGCGTACACGTGCTGCCTCTCCGCCGACGGG
CTGAGCCTCGGGGGCAAGAACCTGCCGACCCTGGAGAGGATGCTGTGCCC
CCCCAACGGGGAGGCCGACGCGGACCTGATGACCCTCGACGCCGCCCTGA
TCGGCGCCGGGACCAGCGAGAGGGCGAATTGGGGGGGCGACGAGGGGGTG
CTGCGAACCCTCCGGCTGTGCATCCTGGACCTGCTGCTGGAAAACGTGGA
ACAGCGGGGCCCGAACCTGGCGCACCTGCTGCTCGGCCTCCTCGGCCCCT
CCACCTCTGCTGCCGCCGCGGCGGCGCCGAGAGCGAGCGTTTGCCTGGAG
GCCGTGGTCGGGCTGCTGAATAGCCCGATGATGATGGAGCAGGAGCCTCG
CCTCGCCGAGAAGTGCTGCGAACCCTCCGGCTGTGCATCCTGGACCTGCT
GCTGGAAAACGTGGAACAGCGGGGCCCGAACCTGGCGCACCTGCTGCTCG
GCCTCCTCGGCCCCTCCACCTCTGCTGCCGCCGCGGCGGCGCCGAGAGCG
AGCGTTTGCCTGGAGGCCGTGGTCGGGCTGCTGAATAGCCCGATGATGAT
GGAGCAGGAGCCTCGCCTCGCCGAGAAGTGTTCTCACCTTCTCTACAAGC
TCTGCTCCTGCAAGGACACGCGCGTTTCCGTGCTCAACAGGCTCAGGAAC
TCCTCGGGAGGGCGTTCCAAGGAGGCCTTCTTCCCGCAGTTCTCACCTTC
TCTACAAGCTCTGCTCCTGCAAGGACACGCGCGTTTCCGTGCTCAACAGG
CTCAGGAACTCCTCGGGAGGGCGTTCCAAGGAGGCCTTCTTCCCGCAGGC
CATACGACTCGCGCTCGGAGGGAGGCGGCTGGAACCGGCGTCGTCGTCGG
CGGCGGCGTTGGCGGGGAGGGGTGCCAAGCCGGACGTGTCGTTCGAGCGG
CACTGTCTTGCGTGGCTGCTCAAGGCCGCCGCGATTGACTTGAGGACGTC
GTGCGAAGCCATACGACTCGCGCTCGGAGGGAGGCGGCTGGAACCGGCGT
CGTCGTCGGCGGCGGCGTTGGCGGGGAGGGGTGCCAAGCCGGACGTGTCG
TTCGAGCGGCACTGTCTTGCGTGGCTGCTCAAGGCCGCCGCGATTGACTT
GAGGACGTCGTGCGAA
back to top